IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1731	 67.77	0	2101600..2102322	+	240	83716824	-	BTH_II1739	-	DNA-binding response regulator
1732	 69.60	0	2102323..2103651	+	442	83717354	-	BTH_II1740	-	sensor histidine kinase
1733	 69.30	0	2103899..2105302	-	467	83716770	-	BTH_II1741	-	monoxygenase
1734	 70.38	0	2105594..2106832	-	412	83717502	-	BTH_II1742	-	acyl-CoA dehydrogenase domain-containing protein
1735	 65.25	0	2107194..2107547	+	117	83718379	-	BTH_II1743	-	hypothetical protein
1736	 64.96	0	2107943..2108410	-	155	83716165	-	BTH_II1744	-	hypothetical protein
1737	 70.58	0	2108523..2109518	-	331	83716932	-	BTH_II1745	-	AraC family transcriptional regulator
1738	 69.48	0	2109709..2110170	+	153	83717765	-	BTH_II1746	-	isoquinoline 1-oxidoreductase, alpha subunit
1739	 72.23	+1	2110173..2112401	+	742	83717480	-	BTH_II1747	-	isoquinoline 1-oxidoreductase, beta subunit
1740	 65.37	0	2112956..2113417	+	153	83718022	-	BTH_II1748	-	response regulator protein
1741	 69.91	0	2113461..2115431	-	656	83716636	asnB-2	BTH_II1749	-	asparagine synthase (glutamine-hydrolyzing)
1742	 68.81	0	2115649..2116533	-	294	83718308	-	BTH_II1750	-	hypothetical protein
1743	 70.29	0	2116687..2117817	+	376	83716650	-	BTH_II1751	-	LuxR family transcriptional regulator
1744	 68.21	0	2118170..2119858	-	562	83716111	-	BTH_II1752	-	trehalase
1745	 69.17	0	2120185..2121582	+	465	83717981	-	BTH_II1753	-	EmrB/QacA family drug resistance transporter
1746	 70.20	0	2121979..2123250	+	423	83717444	-	BTH_II1754	-	hypothetical protein
1747	 64.38	0	2123498..2123716	-	72	83716341	-	BTH_II1755	-	hypothetical protein
1748	 68.07	0	2123807..2124448	-	213	83718327	-	BTH_II1756	-	acetyltransferase (GNAT) family protein
1749	 69.55	0	2124651..2125553	-	300	83717291	-	BTH_II1757	-	hypothetical protein
1750	 69.67	0	2125669..2126034	-	121	83716695	-	BTH_II1758	-	TfoX domain-containing protein
1751	 70.00	0	2126144..2127583	-	479	83716570	-	BTH_II1759	-	M20/M25/M40 family peptidase
1752	 71.79	0	2128270..2129226	-	318	83716555	ftrA	BTH_II1760	-	transcriptional activator FtrA
1753	 69.71	0	2129225..2129749	+	174	83717246	-	BTH_II1761	-	rhodanese-like domain-containing protein
1754	 63.61	0	2129905..2130231	+	108	83716734	-	BTH_II1762	-	immunity protein, putative
1755	 64.81	0	2130404..2130673	-	89	83716315	-	BTH_II1763	-	hypothetical protein
1756	 70.03	0	2131057..2131917	-	286	83716274	-	BTH_II1764	-	SIS domain-containing protein
1757	 68.62	0	2131971..2132738	+	255	83718179	-	BTH_II1765	-	DNA-binding response regulator
1758	 71.70	0	2132765..2134114	+	449	83717654	-	BTH_II1766	-	sensor histidine kinase
1759	 70.32	0	2135651..2136361	-	236	83717475	-	BTH_II1767	-	hypothetical protein
1760	 68.18	0	2136402..2137061	-	219	83716724	-	BTH_II1768	-	glutathione S-transferase, putative
1761	 67.09	0	2137247..2137723	-	158	83717409	-	BTH_II1769	-	glyoxalase family protein
1762	 66.67	0	2138166..2138429	-	87	83716473	-	BTH_II1770	-	major surface protein 3
1763	 73.52	+1	2138525..2140801	-	758	83716992	-	BTH_II1771	-	amylo-alpha-1,6-glucosidase family
1764	 73.81	+1	2140895..2141062	-	55	83717097	-	BTH_II1772	-	HD domain-containing protein
1765	 72.32	+1	2141055..2141231	-	58	83717605	-	BTH_II1773	-	HD domain-containing protein
1766	 72.43	+1	2141757..2146283	-	1508	83717954	-	BTH_II1774	-	serine protease
1767	 47.37	-2	2146544..2146657	-	37	83716083	-	BTH_II1775	-	hypothetical protein
1768	 59.47	-1	2146795..2147586	+	263	83716245	-	BTH_II1776	-	hypothetical protein
1769	 70.00	0	2147630..2147809	-	59	83717399	-	BTH_II1777	-	hypothetical protein
1770	 64.21	0	2148358..2149698	+	446	83717040	-	BTH_II1778	-	cytochrome c
1771	 70.23	0	2149748..2150365	+	205	83716396	c552	BTH_II1779	-	cytochrome c family protein
1772	 71.17	0	2150407..2151561	-	384	83718375	-	BTH_II1780	-	rod shape-determining protein MreB
1773	 67.98	0	2151670..2154324	+	884	83718019	-	BTH_II1781	-	OMP85 family outer membrane protein
1774	 69.35	0	2154682..2155797	-	371	83717165	-	BTH_II1782	-	sensor histidine kinase
1775	 63.77	0	2156141..2156899	-	252	83716654	-	BTH_II1783	-	DNA-binding response regulator
1776	 65.33	0	2157296..2157445	+	49	83717675	-	BTH_II1784	-	glutaminase A
1777	 55.38	-2	2157746..2157931	+	61	83717412	-	BTH_II1785	-	transposase mutator family protein
1778	 59.64	-1	2158067..2158891	+	274	83717484	-	BTH_II1786	-	hypothetical protein
1779	 64.18	0	2158960..2159241	-	93	83717415	-	BTH_II1787	-	hypothetical protein
1780	 62.82	-1	2159271..2160311	+	346	83717318	-	BTH_II1788	-	glutaminase
1781	 64.04	0	2161096..2161818	-	240	83717825	-	BTH_II1789	-	ribonuclease T2 family protein
1782	 66.94	0	2162166..2163260	-	364	83716833	msuD	BTH_II1790	-	luciferase-like monooxygenase
1783	 66.51	0	2163570..2164832	+	420	83716366	-	BTH_II1791	-	macrolide efflux protein MacA
1784	 67.69	0	2164835..2166796	+	653	83717068	macB	BTH_II1792	-	macrolide-specific ABC-type efflux carrier
1785	 71.34	0	2166806..2168197	+	463	83717729	-	BTH_II1793	-	outer membrane efflux protein
1786	 66.37	0	2168273..2168941	+	222	83717583	-	BTH_II1794	-	transcriptional regulator
1787	 63.92	0	2168963..2169508	+	181	83718241	-	BTH_II1795	-	long-chain-fatty-acid--CoA ligase
1788	 68.57	0	2169551..2170075	+	174	83716376	-	BTH_II1796	-	long-chain-fatty-acid--CoA ligase
1789	 66.78	0	2170072..2170986	+	304	83716898	-	BTH_II1797	-	acyl-CoA synthetase
1790	 69.29	0	2171101..2172243	-	380	83717427	-	BTH_II1798	-	enoyl-CoA hydratase/isomerase family protein
1791	 73.33	+1	2172240..2173034	-	264	83717948	-	BTH_II1799	-	enoyl-CoA hydratase
1792	 70.46	0	2173034..2173930	-	298	83716113	mmsB	BTH_II1800	-	3-hydroxyisobutyrate dehydrogenase
1793	 67.65	0	2173943..2175472	-	509	83717743	mmsA-3	BTH_II1801	-	methylmalonate-semialdehyde dehydrogenase
1794	 69.01	0	2175551..2177254	-	567	83716563	-	BTH_II1802	-	AMP-binding enzyme
1795	 67.99	0	2177560..2178693	-	377	83718149	-	BTH_II1803	-	acyl-CoA dehydrogenase
1796	 69.68	0	2178793..2179920	+	375	83717593	-	BTH_II1804	-	AraC family transcription regulator
1797	 75.27	+1	2179827..2181500	+	557	83716454	-	BTH_II1805	-	nodulation competitiveness protein nfeD
1798	 66.15	0	2181497..2182267	+	256	83716937	-	BTH_II1806	-	SPFH domain-containing protein/band 7 family protein
1799	 67.91	0	2182753..2183640	+	295	83718321	-	BTH_II1807	-	hypothetical protein
1800	 71.92	0	2183691..2185481	+	596	161723118	-	BTH_II1808	-	short chain dehydrogenase
1801	 65.02	0	2185518..2186426	+	302	83716669	-	BTH_II1809	-	FF domain-containing protein
1802	 69.77	0	2186859..2187245	+	128	83716164	-	BTH_II1810	-	hypothetical protein
1803	 70.49	0	2187434..2187616	-	60	83716404	-	BTH_II1811	-	hypothetical protein
1804	 68.07	0	2187834..2188118	-	94	83717508	-	BTH_II1812	-	hypothetical protein
1805	 67.47	0	2189001..2189621	-	206	83716575	-	BTH_II1813	-	hypothetical protein
1806	 65.82	0	2189863..2191164	+	433	83717083	-	BTH_II1814	-	permease
1807	 68.18	0	2191387..2191518	-	43	83717920	-	BTH_II1815	-	hypothetical protein
1808	 64.58	0	2191571..2191858	-	95	83716064	-	BTH_II1816	-	hypothetical protein
1809	 68.37	0	2192003..2192296	-	97	83716321	-	BTH_II1817	-	putative integral membrane protein
1810	 64.62	0	2192448..2192642	-	64	83716849	-	BTH_II1818	-	hypothetical protein
1811	 72.14	+1	2192912..2194867	+	651	83717601	-	BTH_II1819	-	sigma-54 activated regulatory protein
1812	 69.07	0	2195352..2195642	+	96	83718116	-	BTH_II1820	-	2Fe-2S iron-sulfur
1813	 72.13	+1	2195707..2197080	-	457	83717303	-	BTH_II1821	-	transporter
1814	 75.64	+1	2196971..2198485	-	504	83718094	-	BTH_II1822	-	PepSY-associated TM helix family protein
1815	 68.45	0	2198750..2200993	-	747	83716062	fptA	BTH_II1823	-	Fe(III)-pyochelin receptor precursor
1816	 74.73	+1	2201070..2202842	-	590	83717042	pchI	BTH_II1824	-	ABC transporter ATP-binding protein
1817	 74.18	+1	2202839..2204569	-	576	83716837	-	BTH_II1825	-	ABC transporter, ATP-binding/permease protein, putative
1818	 73.77	+1	2204566..2205621	-	351	83718122	pchG	BTH_II1826	-	pyochelin biosynthetic protein
1819	 72.93	+1	2205618..2211302	-	1894	83717875	-	BTH_II1827	-	pyochelin synthetase
1820	 73.66	+1	2211299..2215690	-	1463	83716174	pchE	BTH_II1828	-	pyochelin synthetase
1821	 68.62	0	2215817..2216788	-	323	83717721	pchR	BTH_II1829	-	AraC family transcription regulator
1822	 70.94	0	2216990..2218906	+	638	83718369	pchD	BTH_II1830	-	salicyl-AMP ligase
1823	 70.67	0	2218903..2219676	+	257	83716356	pchC	BTH_II1831	-	pyochelin biosynthetic protein
1824	 68.30	0	2219673..2219978	+	101	83717053	pchB	BTH_II1832	-	isochorismate-pyruvate lyase
1825	 73.44	+1	2219975..2221420	+	481	83716790	-	BTH_II1833	-	salicylate biosynthesis isochorismate synthase
1826	 69.32	0	2221648..2222892	-	414	83716755	-	BTH_II1834	-	LasA protease precursor
1827	 66.95	0	2223622..2224323	-	233	83716093	-	BTH_II1835	-	ABC transporter
1828	 66.15	0	2224323..2225096	-	257	83716525	livG	BTH_II1836	-	leucine/isoleucine/valine transporter ATP-binding subunit
1829	 66.90	0	2225093..2226364	-	423	83717622	livM	BTH_II1837	-	leucine/isoleucine/valine transporter permease subunit
1830	 65.16	0	2226373..2227299	-	308	83716942	braD	BTH_II1838	-	high-affinity branched-chain amino acid transport system permease protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.