IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1673	 65.13	0	2036259..2036975	-	238	83716249	-	BTH_II1681	-	ATP-dependent transcription regulator LuxR
1674	 67.42	0	2037615..2037746	-	43	83717958	-	BTH_II1682	-	hypothetical protein
1675	 63.33	0	2039158..2039487	-	109	83717651	-	BTH_II1683	-	hypothetical protein
1676	 72.23	+1	2040995..2043025	+	676	83717668	-	BTH_II1684	-	methyl-accepting chemotaxis protein I
1677	 71.05	0	2043052..2043759	-	235	83717537	-	BTH_II1685	-	hypothetical protein
1678	 68.89	0	2044076..2045737	-	553	83717079	-	BTH_II1686	-	acyl-CoA synthetase
1679	 67.44	0	2045781..2046680	+	299	83717187	-	BTH_II1687	-	cyclic nucleotide-binding domain-containing protein
1680	 69.51	0	2047012..2047854	+	280	83717261	-	BTH_II1688	-	AraC family transcriptional regulator
1681	 68.89	0	2048097..2048231	+	44	83718010	-	BTH_II1689	-	hypothetical protein
1682	 68.94	0	2048357..2048971	-	204	83716155	-	BTH_II1690	-	LysE family protein, putative
1683	 67.22	0	2049029..2049571	+	180	83717870	-	BTH_II1691	-	multidrug efflux membrane protein, putative
1684	 71.67	0	2049651..2050370	-	239	83717572	-	BTH_II1692	-	hypothetical protein
1685	 74.29	+1	2050474..2051982	+	502	83717201	-	BTH_II1693	-	GntR family transcriptional regulator
1686	 71.05	0	2051904..2052929	+	341	83716455	-	BTH_II1694	-	D-beta-hydroxybutyrate dehydrogenase
1687	 70.71	0	2053028..2053423	-	131	83718014	-	BTH_II1695	-	osmotically-inducible lipoprotein OsmE
1688	 72.28	+1	2053554..2054729	-	391	83716829	-	BTH_II1696	-	hypothetical protein
1689	 69.46	0	2054739..2055167	-	142	83718239	-	BTH_II1697	-	acetyltransferase
1690	 68.64	0	2055309..2056070	-	253	83718266	-	BTH_II1698	-	enoyl-(acyl carrier protein) reductase
1691	 70.86	0	2056674..2057771	-	365	83716559	-	BTH_II1699	-	xenobiotic reductase A
1692	 67.98	0	2057989..2058672	-	227	83718124	-	BTH_II1700	-	DJ-1/PfpI family protein
1693	 71.60	0	2058734..2059159	+	141	83717084	-	BTH_II1701	-	hypothetical protein
1694	 62.39	-1	2059243..2060178	-	311	83716624	-	BTH_II1702	-	TetR family transcriptional regulator
1695	 63.53	0	2060497..2063145	+	882	83716681	-	BTH_II1703	-	hypothetical protein
1696	 62.52	-1	2063115..2063885	-	256	83717513	-	BTH_II1704	-	MmcH, putative
1697	 58.50	-2	2063925..2064218	-	97	83718114	-	BTH_II1705	-	oxidoreductase domain-containing protein
1698	 62.54	-1	2064704..2066254	+	516	83717596	-	BTH_II1706	-	radical SAM domain-containing protein
1699	 63.21	0	2066623..2068563	+	646	83717785	-	BTH_II1707	-	radical SAM domain-containing protein
1700	 62.06	-1	2068560..2069753	+	397	83717208	-	BTH_II1708	-	hypothetical protein
1701	 63.26	0	2069780..2070043	+	87	83716552	-	BTH_II1709	-	ThiS domain-containing protein
1702	 63.33	0	2069952..2071988	+	678	83717833	-	BTH_II1710	-	carbamoyltransferase family protein
1703	 66.88	0	2073877..2074344	+	155	83716194	-	BTH_II1711	-	hypothetical protein
1704	 67.59	0	2074546..2075520	-	324	83718042	-	BTH_II1712	-	hypothetical protein
1705	 67.31	0	2075525..2076760	-	411	83718173	-	BTH_II1713	-	domain of unknown function
1706	 65.11	0	2076927..2077568	-	213	83717670	-	BTH_II1714	-	domain of unknown function
1707	 71.20	0	2077837..2078961	+	374	161723116	alr-2	BTH_II1715	-	alanine racemase
1708	 75.86	+1	2079023..2079196	-	57	83717627	-	BTH_II1716	-	hypothetical protein
1709	 71.95	0	2079275..2080069	-	264	83717091	-	BTH_II1717	-	enoyl-CoA hydratase
1710	 72.77	+1	2080790..2081248	-	152	83716586	-	BTH_II1719	-	hypothetical protein
1711	 74.07	+1	2080915..2081103	+	62	83718038	-	BTH_II1718	-	hypothetical protein
1712	 66.92	0	2081393..2082595	-	400	83718226	-	BTH_II1720	-	outer membrane porin OpcP
1713	 66.67	0	2082944..2083048	+	34	83717473	-	BTH_II1721	-	hypothetical protein
1714	 71.30	0	2083373..2084623	+	416	83717910	-	BTH_II1722	-	MOSC domain-containing protein
1715	 72.08	+1	2084795..2086309	-	504	83717352	-	BTH_II1723	-	sensor histidine kinase
1716	 65.05	0	2086306..2087109	-	267	83717906	-	BTH_II1724	-	DNA-binding response regulator TctD
1717	 62.99	-1	2087108..2088196	+	362	83716977	-	BTH_II1725	-	ABC transporter, periplasmic substrate-binding protein
1718	 67.80	0	2088295..2090052	+	585	83717663	-	BTH_II1726	-	iron, putative
1719	 71.82	0	2090045..2091112	+	355	83717424	-	BTH_II1727	-	ABC transporter, ATP-binding protein
1720	 67.03	0	2091512..2092603	+	363	83718080	-	BTH_II1728	-	porin
1721	 74.02	+1	2092830..2093645	-	271	83716329	hpaI	BTH_II1729	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
1722	 67.16	0	2093655..2094458	-	267	83716988	hpaH	BTH_II1730	-	2-oxo-hepta-3-ene-1,7-dioic acid hydratase
1723	 64.63	0	2094481..2094873	-	130	83716423	hpcD	BTH_II1731	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
1724	 65.72	0	2094931..2095779	-	282	83718207	hpaD	BTH_II1732	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
1725	 67.42	0	2095849..2097312	-	487	83717784	hpaE	BTH_II1733	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
1726	 67.71	0	2097336..2098100	-	254	83718296	hpaG-1	BTH_II1734	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
1727	 71.01	0	2098097..2098786	-	229	83717800	hpaG-2	BTH_II1735	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
1728	 63.01	-1	2098952..2099389	+	145	83716641	hpaR	BTH_II1736	-	homoprotocatechuate degradation operon regulator, HpaR
1729	 73.15	+1	2099412..2100599	-	395	83716154	-	BTH_II1737	-	hypothetical protein
1730	 66.45	0	2100623..2101537	-	304	83718013	-	BTH_II1738	-	MipA family MltA-interacting protein
1731	 67.77	0	2101600..2102322	+	240	83716824	-	BTH_II1739	-	DNA-binding response regulator
1732	 69.60	0	2102323..2103651	+	442	83717354	-	BTH_II1740	-	sensor histidine kinase
1733	 69.30	0	2103899..2105302	-	467	83716770	-	BTH_II1741	-	monoxygenase
1734	 70.38	0	2105594..2106832	-	412	83717502	-	BTH_II1742	-	acyl-CoA dehydrogenase domain-containing protein
1735	 65.25	0	2107194..2107547	+	117	83718379	-	BTH_II1743	-	hypothetical protein
1736	 64.96	0	2107943..2108410	-	155	83716165	-	BTH_II1744	-	hypothetical protein
1737	 70.58	0	2108523..2109518	-	331	83716932	-	BTH_II1745	-	AraC family transcriptional regulator
1738	 69.48	0	2109709..2110170	+	153	83717765	-	BTH_II1746	-	isoquinoline 1-oxidoreductase, alpha subunit
1739	 72.23	+1	2110173..2112401	+	742	83717480	-	BTH_II1747	-	isoquinoline 1-oxidoreductase, beta subunit
1740	 65.37	0	2112956..2113417	+	153	83718022	-	BTH_II1748	-	response regulator protein
1741	 69.91	0	2113461..2115431	-	656	83716636	asnB-2	BTH_II1749	-	asparagine synthase (glutamine-hydrolyzing)
1742	 68.81	0	2115649..2116533	-	294	83718308	-	BTH_II1750	-	hypothetical protein
1743	 70.29	0	2116687..2117817	+	376	83716650	-	BTH_II1751	-	LuxR family transcriptional regulator
1744	 68.21	0	2118170..2119858	-	562	83716111	-	BTH_II1752	-	trehalase
1745	 69.17	0	2120185..2121582	+	465	83717981	-	BTH_II1753	-	EmrB/QacA family drug resistance transporter
1746	 70.20	0	2121979..2123250	+	423	83717444	-	BTH_II1754	-	hypothetical protein
1747	 64.38	0	2123498..2123716	-	72	83716341	-	BTH_II1755	-	hypothetical protein
1748	 68.07	0	2123807..2124448	-	213	83718327	-	BTH_II1756	-	acetyltransferase (GNAT) family protein
1749	 69.55	0	2124651..2125553	-	300	83717291	-	BTH_II1757	-	hypothetical protein
1750	 69.67	0	2125669..2126034	-	121	83716695	-	BTH_II1758	-	TfoX domain-containing protein
1751	 70.00	0	2126144..2127583	-	479	83716570	-	BTH_II1759	-	M20/M25/M40 family peptidase
1752	 71.79	0	2128270..2129226	-	318	83716555	ftrA	BTH_II1760	-	transcriptional activator FtrA
1753	 69.71	0	2129225..2129749	+	174	83717246	-	BTH_II1761	-	rhodanese-like domain-containing protein
1754	 63.61	0	2129905..2130231	+	108	83716734	-	BTH_II1762	-	immunity protein, putative
1755	 64.81	0	2130404..2130673	-	89	83716315	-	BTH_II1763	-	hypothetical protein
1756	 70.03	0	2131057..2131917	-	286	83716274	-	BTH_II1764	-	SIS domain-containing protein
1757	 68.62	0	2131971..2132738	+	255	83718179	-	BTH_II1765	-	DNA-binding response regulator
1758	 71.70	0	2132765..2134114	+	449	83717654	-	BTH_II1766	-	sensor histidine kinase
1759	 70.32	0	2135651..2136361	-	236	83717475	-	BTH_II1767	-	hypothetical protein
1760	 68.18	0	2136402..2137061	-	219	83716724	-	BTH_II1768	-	glutathione S-transferase, putative
1761	 67.09	0	2137247..2137723	-	158	83717409	-	BTH_II1769	-	glyoxalase family protein
1762	 66.67	0	2138166..2138429	-	87	83716473	-	BTH_II1770	-	major surface protein 3
1763	 73.52	+1	2138525..2140801	-	758	83716992	-	BTH_II1771	-	amylo-alpha-1,6-glucosidase family
1764	 73.81	+1	2140895..2141062	-	55	83717097	-	BTH_II1772	-	HD domain-containing protein
1765	 72.32	+1	2141055..2141231	-	58	83717605	-	BTH_II1773	-	HD domain-containing protein
1766	 72.43	+1	2141757..2146283	-	1508	83717954	-	BTH_II1774	-	serine protease
1767	 47.37	-2	2146544..2146657	-	37	83716083	-	BTH_II1775	-	hypothetical protein
1768	 59.47	-1	2146795..2147586	+	263	83716245	-	BTH_II1776	-	hypothetical protein
1769	 70.00	0	2147630..2147809	-	59	83717399	-	BTH_II1777	-	hypothetical protein
1770	 64.21	0	2148358..2149698	+	446	83717040	-	BTH_II1778	-	cytochrome c
1771	 70.23	0	2149748..2150365	+	205	83716396	c552	BTH_II1779	-	cytochrome c family protein
1772	 71.17	0	2150407..2151561	-	384	83718375	-	BTH_II1780	-	rod shape-determining protein MreB
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.