IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1635	 65.97	0	1927527..1928681	-	384	83717514	-	BTH_II1643	-	outer membrane porin OpcP
1636	 67.97	0	1928693..1929304	+	203	83718036	-	BTH_II1644	-	hypothetical protein
1637	 65.71	0	1929535..1929744	-	69	83716462	-	BTH_II1645	-	hypothetical protein
1638	 68.45	0	1929791..1930855	-	354	83717101	-	BTH_II1646	-	LysR family transcriptional regulator
1639	 70.52	0	1931007..1933238	+	743	83717452	-	BTH_II1647	-	fusaric acid resistance domain-containing protein
1640	 68.52	0	1933366..1933581	+	71	83718131	-	BTH_II1648	-	hypothetical protein
1641	 69.11	0	1933718..1935397	+	559	83718012	-	BTH_II1649	-	putative lipoprotein
1642	 73.94	+1	1935388..1936611	-	407	83717332	-	BTH_II1650	-	D-aminopeptidase, putative
1643	 68.73	0	1936575..1937981	-	468	83717879	-	BTH_II1651	-	amino acid permease
1644	 69.51	0	1938130..1938903	+	257	83716173	-	BTH_II1652	-	LuxR family transcriptional regulator
1645	 66.94	0	1939074..1939445	+	123	83717129	-	BTH_II1653	-	hypothetical protein
1646	 71.12	0	1940104..1940664	-	186	83717650	-	BTH_II1654	-	lipoprotein NlpD, putative
1647	 60.65	-1	1941163..1942143	-	326	83716800	-	BTH_II1655	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
1648	 61.93	-1	1942534..1943694	-	386	83717310	-	BTH_II1656	-	ISBma1, transposase
1649	 69.30	0	1943927..1945444	-	505	83717826	mmsA-2	BTH_II1657	-	methylmalonate-semialdehyde dehydrogenase
1650	 67.59	0	1945512..1947023	-	503	83718312	-	BTH_II1658	-	beta alanine--pyruvate transaminase
1651	 68.35	0	1946971..1947921	+	316	83716073	-	BTH_II1659	-	LysR family transcriptional regulator
1652	 65.01	0	1948664..1949449	+	261	83717426	-	BTH_II1660	-	hypothetical protein
1653	 70.10	0	1949597..1950091	+	164	83717029	-	BTH_II1661	-	2,4-dihydroxyacetophenone dioxygenase
1654	 71.35	0	1950223..1950414	-	63	83716592	-	BTH_II1662	-	hypothetical protein
1655	 73.53	+1	1950416..1953928	-	1170	83718313	-	BTH_II1663	-	2-oxoacid ferredoxin oxidoreductase
1656	 72.99	+1	1953925..1960173	-	2082	83716710	-	BTH_II1664	-	polyketide synthase, putative
1657	 74.64	+1	1960098..1974047	-	4649	83716097	-	BTH_II1665	-	polyketide synthase, putative
1658	 74.71	+1	1973189..1989889	-	5566	83716786	-	BTH_II1666	-	polyketide synthase, putative
1659	 74.59	+1	1989915..1995620	-	1901	83716287	-	BTH_II1667	-	polyketide synthase, putative
1660	 68.01	0	1995632..1996378	-	248	83717978	-	BTH_II1668	-	polyketide biosynthesis enoyl-CoA hydratase
1661	 73.78	+1	1996375..1997175	-	266	83717378	-	BTH_II1669	-	polyketide biosynthesis enoyl-CoA hydratase
1662	 68.26	0	1997172..1998428	-	418	83716712	-	BTH_II1670	-	polyketide biosynthesis protein
1663	 75.52	+1	1998412..1999665	-	417	83716629	-	BTH_II1671	-	polyketide beta-ketoacyl:acyl carrier protein synthase
1664	 65.46	0	1999658..1999906	-	82	83717915	-	BTH_II1672	-	acyl carrier protein
1665	 74.89	+1	1999941..2011718	-	3925	83717633	-	BTH_II1673	-	thiotemplate mechanism natural product synthetase
1666	 74.78	+1	2011510..2028396	-	5628	83716943	-	BTH_II1674	-	polyketide synthase
1667	 70.45	0	2028449..2031913	-	1154	83716851	-	BTH_II1675	-	MmpIII
1668	 67.29	0	2031959..2032756	-	265	83717028	-	BTH_II1676	-	4-phosphopantetheinyl transferase family protein
1669	 65.88	0	2033299..2033553	+	84	83717868	-	BTH_II1677	-	phenolpthiocerol synthesis type-i polyketide synthase ppsa
1670	 64.44	0	2033561..2034322	-	253	83717406	-	BTH_II1678	-	serine/threonine protein phosphatase family protein
1671	 62.02	-1	2034376..2035344	-	322	83717133	accA-2	BTH_II1679	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
1672	 66.67	0	2035673..2036224	-	183	83716607	-	BTH_II1680	-	hypothetical protein
1673	 65.13	0	2036259..2036975	-	238	83716249	-	BTH_II1681	-	ATP-dependent transcription regulator LuxR
1674	 67.42	0	2037615..2037746	-	43	83717958	-	BTH_II1682	-	hypothetical protein
1675	 63.33	0	2039158..2039487	-	109	83717651	-	BTH_II1683	-	hypothetical protein
1676	 72.23	+1	2040995..2043025	+	676	83717668	-	BTH_II1684	-	methyl-accepting chemotaxis protein I
1677	 71.05	0	2043052..2043759	-	235	83717537	-	BTH_II1685	-	hypothetical protein
1678	 68.89	0	2044076..2045737	-	553	83717079	-	BTH_II1686	-	acyl-CoA synthetase
1679	 67.44	0	2045781..2046680	+	299	83717187	-	BTH_II1687	-	cyclic nucleotide-binding domain-containing protein
1680	 69.51	0	2047012..2047854	+	280	83717261	-	BTH_II1688	-	AraC family transcriptional regulator
1681	 68.89	0	2048097..2048231	+	44	83718010	-	BTH_II1689	-	hypothetical protein
1682	 68.94	0	2048357..2048971	-	204	83716155	-	BTH_II1690	-	LysE family protein, putative
1683	 67.22	0	2049029..2049571	+	180	83717870	-	BTH_II1691	-	multidrug efflux membrane protein, putative
1684	 71.67	0	2049651..2050370	-	239	83717572	-	BTH_II1692	-	hypothetical protein
1685	 74.29	+1	2050474..2051982	+	502	83717201	-	BTH_II1693	-	GntR family transcriptional regulator
1686	 71.05	0	2051904..2052929	+	341	83716455	-	BTH_II1694	-	D-beta-hydroxybutyrate dehydrogenase
1687	 70.71	0	2053028..2053423	-	131	83718014	-	BTH_II1695	-	osmotically-inducible lipoprotein OsmE
1688	 72.28	+1	2053554..2054729	-	391	83716829	-	BTH_II1696	-	hypothetical protein
1689	 69.46	0	2054739..2055167	-	142	83718239	-	BTH_II1697	-	acetyltransferase
1690	 68.64	0	2055309..2056070	-	253	83718266	-	BTH_II1698	-	enoyl-(acyl carrier protein) reductase
1691	 70.86	0	2056674..2057771	-	365	83716559	-	BTH_II1699	-	xenobiotic reductase A
1692	 67.98	0	2057989..2058672	-	227	83718124	-	BTH_II1700	-	DJ-1/PfpI family protein
1693	 71.60	0	2058734..2059159	+	141	83717084	-	BTH_II1701	-	hypothetical protein
1694	 62.39	-1	2059243..2060178	-	311	83716624	-	BTH_II1702	-	TetR family transcriptional regulator
1695	 63.53	0	2060497..2063145	+	882	83716681	-	BTH_II1703	-	hypothetical protein
1696	 62.52	-1	2063115..2063885	-	256	83717513	-	BTH_II1704	-	MmcH, putative
1697	 58.50	-2	2063925..2064218	-	97	83718114	-	BTH_II1705	-	oxidoreductase domain-containing protein
1698	 62.54	-1	2064704..2066254	+	516	83717596	-	BTH_II1706	-	radical SAM domain-containing protein
1699	 63.21	0	2066623..2068563	+	646	83717785	-	BTH_II1707	-	radical SAM domain-containing protein
1700	 62.06	-1	2068560..2069753	+	397	83717208	-	BTH_II1708	-	hypothetical protein
1701	 63.26	0	2069780..2070043	+	87	83716552	-	BTH_II1709	-	ThiS domain-containing protein
1702	 63.33	0	2069952..2071988	+	678	83717833	-	BTH_II1710	-	carbamoyltransferase family protein
1703	 66.88	0	2073877..2074344	+	155	83716194	-	BTH_II1711	-	hypothetical protein
1704	 67.59	0	2074546..2075520	-	324	83718042	-	BTH_II1712	-	hypothetical protein
1705	 67.31	0	2075525..2076760	-	411	83718173	-	BTH_II1713	-	domain of unknown function
1706	 65.11	0	2076927..2077568	-	213	83717670	-	BTH_II1714	-	domain of unknown function
1707	 71.20	0	2077837..2078961	+	374	161723116	alr-2	BTH_II1715	-	alanine racemase
1708	 75.86	+1	2079023..2079196	-	57	83717627	-	BTH_II1716	-	hypothetical protein
1709	 71.95	0	2079275..2080069	-	264	83717091	-	BTH_II1717	-	enoyl-CoA hydratase
1710	 72.77	+1	2080790..2081248	-	152	83716586	-	BTH_II1719	-	hypothetical protein
1711	 74.07	+1	2080915..2081103	+	62	83718038	-	BTH_II1718	-	hypothetical protein
1712	 66.92	0	2081393..2082595	-	400	83718226	-	BTH_II1720	-	outer membrane porin OpcP
1713	 66.67	0	2082944..2083048	+	34	83717473	-	BTH_II1721	-	hypothetical protein
1714	 71.30	0	2083373..2084623	+	416	83717910	-	BTH_II1722	-	MOSC domain-containing protein
1715	 72.08	+1	2084795..2086309	-	504	83717352	-	BTH_II1723	-	sensor histidine kinase
1716	 65.05	0	2086306..2087109	-	267	83717906	-	BTH_II1724	-	DNA-binding response regulator TctD
1717	 62.99	-1	2087108..2088196	+	362	83716977	-	BTH_II1725	-	ABC transporter, periplasmic substrate-binding protein
1718	 67.80	0	2088295..2090052	+	585	83717663	-	BTH_II1726	-	iron, putative
1719	 71.82	0	2090045..2091112	+	355	83717424	-	BTH_II1727	-	ABC transporter, ATP-binding protein
1720	 67.03	0	2091512..2092603	+	363	83718080	-	BTH_II1728	-	porin
1721	 74.02	+1	2092830..2093645	-	271	83716329	hpaI	BTH_II1729	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
1722	 67.16	0	2093655..2094458	-	267	83716988	hpaH	BTH_II1730	-	2-oxo-hepta-3-ene-1,7-dioic acid hydratase
1723	 64.63	0	2094481..2094873	-	130	83716423	hpcD	BTH_II1731	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
1724	 65.72	0	2094931..2095779	-	282	83718207	hpaD	BTH_II1732	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
1725	 67.42	0	2095849..2097312	-	487	83717784	hpaE	BTH_II1733	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
1726	 67.71	0	2097336..2098100	-	254	83718296	hpaG-1	BTH_II1734	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
1727	 71.01	0	2098097..2098786	-	229	83717800	hpaG-2	BTH_II1735	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
1728	 63.01	-1	2098952..2099389	+	145	83716641	hpaR	BTH_II1736	-	homoprotocatechuate degradation operon regulator, HpaR
1729	 73.15	+1	2099412..2100599	-	395	83716154	-	BTH_II1737	-	hypothetical protein
1730	 66.45	0	2100623..2101537	-	304	83718013	-	BTH_II1738	-	MipA family MltA-interacting protein
1731	 67.77	0	2101600..2102322	+	240	83716824	-	BTH_II1739	-	DNA-binding response regulator
1732	 69.60	0	2102323..2103651	+	442	83717354	-	BTH_II1740	-	sensor histidine kinase
1733	 69.30	0	2103899..2105302	-	467	83716770	-	BTH_II1741	-	monoxygenase
1734	 70.38	0	2105594..2106832	-	412	83717502	-	BTH_II1742	-	acyl-CoA dehydrogenase domain-containing protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.