IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1593	 67.60	0	1878470..1879111	+	213	83716120	-	BTH_II1600	-	TetR family transcriptional regulator
1594	 66.08	0	1879128..1879466	-	112	83716511	-	BTH_II1601	-	hypothetical protein
1595	 68.08	0	1879506..1880282	-	258	83718351	-	BTH_II1602	-	short chain dehydrogenase
1596	 69.75	0	1880479..1881321	-	280	83717373	-	BTH_II1603	-	fumarylacetoacetate hydrolase family protein
1597	 70.97	0	1881381..1882124	-	247	83717019	-	BTH_II1604	-	short chain dehydrogenase/reductase family oxidoreductase
1598	 74.98	+1	1882283..1883329	-	348	83717860	-	BTH_II1605	-	hydrolase
1599	 71.16	0	1883385..1884674	-	429	83717398	-	BTH_II1606	-	dehydratase; D-galactarate dehydratase; altronate dehydratase
1600	 71.03	0	1884766..1885086	-	106	83716075	-	BTH_II1607	-	D-galactarate dehydratase/Altronate hydrolase family protein
1601	 70.76	0	1885083..1886108	-	341	83718386	-	BTH_II1608	-	sugar ABC transporter, permease protein
1602	 72.84	+1	1886098..1887636	-	512	83717722	-	BTH_II1609	-	sugar ABC transporter, ATP-binding protein
1603	 67.65	0	1887633..1888646	-	337	83717073	-	BTH_II1610	-	sugar ABC transporter, periplasmic sugar-binding protein
1604	 68.94	0	1888767..1889645	+	292	83717696	-	BTH_II1611	-	IclR family transcriptional regulator
1605	 68.79	0	1889766..1890236	-	156	83717488	soxR	BTH_II1612	-	redox-sensitive transcriptional activator SoxR
1606	 73.79	+1	1890550..1890900	+	116	83716359	-	BTH_II1613	-	RND family efflux transporter MFP subunit
1607	 64.67	0	1891241..1892140	-	299	83718001	-	BTH_II1615	-	LysR family transcriptional regulator
1608	 63.96	0	1892249..1893394	+	381	83717684	-	BTH_II1616	-	C4-dicarboxylate transporter/malic acid transport protein, putative
1609	 63.13	-1	1893471..1894460	+	329	83717185	-	BTH_II1617	-	malate dehydrogenase
1610	 63.43	0	1895005..1896612	+	535	83716344	-	BTH_II1618	-	cytochrome c oxidase subunit transmembrane protein
1611	 63.83	0	1896625..1897224	+	199	83718245	-	BTH_II1619	-	FixOc
1612	 67.54	0	1897221..1897790	+	189	83717563	-	BTH_II1620	-	outer membrane nitrite reductase, putative
1613	 70.47	0	1897787..1900072	+	761	83718002	-	BTH_II1621	-	copper-translocating P-type ATPase
1614	 64.13	0	1899970..1901310	+	446	83716461	-	BTH_II1622	-	sulfite:cytochrome c oxidoreductase subunit A
1615	 68.68	0	1901360..1902550	+	396	83717181	-	BTH_II1623	-	hypothetical protein
1616	 67.63	0	1902615..1903031	-	138	83717735	-	BTH_II1624	-	hypothetical protein
1617	 72.56	+1	1903396..1904328	-	310	83717359	-	BTH_II1625	-	senescence marker protein-30 family protein
1618	 67.65	0	1904498..1905517	-	339	83717881	araH	BTH_II1626	-	L-arabinose transporter permease protein
1619	 72.24	+1	1905553..1907130	-	525	83716300	araG	BTH_II1627	-	L-arabinose transporter ATP-binding protein
1620	 68.23	0	1907153..1908175	-	340	83717050	-	BTH_II1628	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
1621	 74.09	+1	1908421..1909350	-	309	83716868	-	BTH_II1629	-	dehydrogenase
1622	 70.32	0	1909384..1910313	-	309	83717217	-	BTH_II1630	-	dihydrodipicolinate synthase, putative
1623	 76.60	+2	1910490..1912100	-	536	83716358	-	BTH_II1631	-	aldehyde dehydrogenase family protein
1624	 69.98	0	1912115..1913866	-	583	83718062	-	BTH_II1632	-	dihydroxy-acid dehydratase
1625	 69.38	0	1913939..1914934	+	331	83716118	-	BTH_II1633	-	LysR family transcriptional regulator
1626	 67.29	0	1915992..1916636	+	214	83716715	-	BTH_II1634	-	LuxR family DNA-binding response regulator
1627	 73.39	+1	1917112..1918092	+	326	83718136	-	BTH_II1635	-	twin-arginine translocation pathway signal sequence domain-containing protein
1628	 67.33	0	1918574..1920241	+	555	83716579	-	BTH_II1636	-	phosphoesterase family protein
1629	 70.66	0	1920321..1921898	+	525	83717380	-	BTH_II1637	-	di-haem cytochrome c peroxidase family protein
1630	 60.27	-1	1922141..1922515	+	124	83717597	-	BTH_II1638	-	hypothetical protein
1631	 66.91	0	1922799..1924055	-	418	83717088	-	BTH_II1639	-	cytosine deaminase
1632	 67.15	0	1924055..1925287	-	410	83717624	-	BTH_II1640	-	DNA-binding protein
1633	 68.41	0	1925292..1926554	-	420	83716067	codB	BTH_II1641	-	cytosine permease
1634	 72.98	+1	1927096..1927491	-	131	83716577	-	BTH_II1642	-	glyoxalase family protein
1635	 65.97	0	1927527..1928681	-	384	83717514	-	BTH_II1643	-	outer membrane porin OpcP
1636	 67.97	0	1928693..1929304	+	203	83718036	-	BTH_II1644	-	hypothetical protein
1637	 65.71	0	1929535..1929744	-	69	83716462	-	BTH_II1645	-	hypothetical protein
1638	 68.45	0	1929791..1930855	-	354	83717101	-	BTH_II1646	-	LysR family transcriptional regulator
1639	 70.52	0	1931007..1933238	+	743	83717452	-	BTH_II1647	-	fusaric acid resistance domain-containing protein
1640	 68.52	0	1933366..1933581	+	71	83718131	-	BTH_II1648	-	hypothetical protein
1641	 69.11	0	1933718..1935397	+	559	83718012	-	BTH_II1649	-	putative lipoprotein
1642	 73.94	+1	1935388..1936611	-	407	83717332	-	BTH_II1650	-	D-aminopeptidase, putative
1643	 68.73	0	1936575..1937981	-	468	83717879	-	BTH_II1651	-	amino acid permease
1644	 69.51	0	1938130..1938903	+	257	83716173	-	BTH_II1652	-	LuxR family transcriptional regulator
1645	 66.94	0	1939074..1939445	+	123	83717129	-	BTH_II1653	-	hypothetical protein
1646	 71.12	0	1940104..1940664	-	186	83717650	-	BTH_II1654	-	lipoprotein NlpD, putative
1647	 60.65	-1	1941163..1942143	-	326	83716800	-	BTH_II1655	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
1648	 61.93	-1	1942534..1943694	-	386	83717310	-	BTH_II1656	-	ISBma1, transposase
1649	 69.30	0	1943927..1945444	-	505	83717826	mmsA-2	BTH_II1657	-	methylmalonate-semialdehyde dehydrogenase
1650	 67.59	0	1945512..1947023	-	503	83718312	-	BTH_II1658	-	beta alanine--pyruvate transaminase
1651	 68.35	0	1946971..1947921	+	316	83716073	-	BTH_II1659	-	LysR family transcriptional regulator
1652	 65.01	0	1948664..1949449	+	261	83717426	-	BTH_II1660	-	hypothetical protein
1653	 70.10	0	1949597..1950091	+	164	83717029	-	BTH_II1661	-	2,4-dihydroxyacetophenone dioxygenase
1654	 71.35	0	1950223..1950414	-	63	83716592	-	BTH_II1662	-	hypothetical protein
1655	 73.53	+1	1950416..1953928	-	1170	83718313	-	BTH_II1663	-	2-oxoacid ferredoxin oxidoreductase
1656	 72.99	+1	1953925..1960173	-	2082	83716710	-	BTH_II1664	-	polyketide synthase, putative
1657	 74.64	+1	1960098..1974047	-	4649	83716097	-	BTH_II1665	-	polyketide synthase, putative
1658	 74.71	+1	1973189..1989889	-	5566	83716786	-	BTH_II1666	-	polyketide synthase, putative
1659	 74.59	+1	1989915..1995620	-	1901	83716287	-	BTH_II1667	-	polyketide synthase, putative
1660	 68.01	0	1995632..1996378	-	248	83717978	-	BTH_II1668	-	polyketide biosynthesis enoyl-CoA hydratase
1661	 73.78	+1	1996375..1997175	-	266	83717378	-	BTH_II1669	-	polyketide biosynthesis enoyl-CoA hydratase
1662	 68.26	0	1997172..1998428	-	418	83716712	-	BTH_II1670	-	polyketide biosynthesis protein
1663	 75.52	+1	1998412..1999665	-	417	83716629	-	BTH_II1671	-	polyketide beta-ketoacyl:acyl carrier protein synthase
1664	 65.46	0	1999658..1999906	-	82	83717915	-	BTH_II1672	-	acyl carrier protein
1665	 74.89	+1	1999941..2011718	-	3925	83717633	-	BTH_II1673	-	thiotemplate mechanism natural product synthetase
1666	 74.78	+1	2011510..2028396	-	5628	83716943	-	BTH_II1674	-	polyketide synthase
1667	 70.45	0	2028449..2031913	-	1154	83716851	-	BTH_II1675	-	MmpIII
1668	 67.29	0	2031959..2032756	-	265	83717028	-	BTH_II1676	-	4-phosphopantetheinyl transferase family protein
1669	 65.88	0	2033299..2033553	+	84	83717868	-	BTH_II1677	-	phenolpthiocerol synthesis type-i polyketide synthase ppsa
1670	 64.44	0	2033561..2034322	-	253	83717406	-	BTH_II1678	-	serine/threonine protein phosphatase family protein
1671	 62.02	-1	2034376..2035344	-	322	83717133	accA-2	BTH_II1679	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
1672	 66.67	0	2035673..2036224	-	183	83716607	-	BTH_II1680	-	hypothetical protein
1673	 65.13	0	2036259..2036975	-	238	83716249	-	BTH_II1681	-	ATP-dependent transcription regulator LuxR
1674	 67.42	0	2037615..2037746	-	43	83717958	-	BTH_II1682	-	hypothetical protein
1675	 63.33	0	2039158..2039487	-	109	83717651	-	BTH_II1683	-	hypothetical protein
1676	 72.23	+1	2040995..2043025	+	676	83717668	-	BTH_II1684	-	methyl-accepting chemotaxis protein I
1677	 71.05	0	2043052..2043759	-	235	83717537	-	BTH_II1685	-	hypothetical protein
1678	 68.89	0	2044076..2045737	-	553	83717079	-	BTH_II1686	-	acyl-CoA synthetase
1679	 67.44	0	2045781..2046680	+	299	83717187	-	BTH_II1687	-	cyclic nucleotide-binding domain-containing protein
1680	 69.51	0	2047012..2047854	+	280	83717261	-	BTH_II1688	-	AraC family transcriptional regulator
1681	 68.89	0	2048097..2048231	+	44	83718010	-	BTH_II1689	-	hypothetical protein
1682	 68.94	0	2048357..2048971	-	204	83716155	-	BTH_II1690	-	LysE family protein, putative
1683	 67.22	0	2049029..2049571	+	180	83717870	-	BTH_II1691	-	multidrug efflux membrane protein, putative
1684	 71.67	0	2049651..2050370	-	239	83717572	-	BTH_II1692	-	hypothetical protein
1685	 74.29	+1	2050474..2051982	+	502	83717201	-	BTH_II1693	-	GntR family transcriptional regulator
1686	 71.05	0	2051904..2052929	+	341	83716455	-	BTH_II1694	-	D-beta-hydroxybutyrate dehydrogenase
1687	 70.71	0	2053028..2053423	-	131	83718014	-	BTH_II1695	-	osmotically-inducible lipoprotein OsmE
1688	 72.28	+1	2053554..2054729	-	391	83716829	-	BTH_II1696	-	hypothetical protein
1689	 69.46	0	2054739..2055167	-	142	83718239	-	BTH_II1697	-	acetyltransferase
1690	 68.64	0	2055309..2056070	-	253	83718266	-	BTH_II1698	-	enoyl-(acyl carrier protein) reductase
1691	 70.86	0	2056674..2057771	-	365	83716559	-	BTH_II1699	-	xenobiotic reductase A
1692	 67.98	0	2057989..2058672	-	227	83718124	-	BTH_II1700	-	DJ-1/PfpI family protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.