IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1548	 70.26	0	1827184..1828323	-	379	83718230	-	BTH_II1555	-	hypothetical protein
1549	 62.94	-1	1828959..1829843	+	294	83718084	-	BTH_II1556	-	hypothetical protein
1550	 64.66	0	1829874..1830470	+	198	83718357	-	BTH_II1557	-	hypothetical protein
1551	 58.84	-1	1830621..1831016	-	131	83716776	-	BTH_II1558	-	H-NS histone family protein
1552	 56.38	-2	1831062..1831304	+	80	83718127	-	BTH_II1559	-	DNA-binding protein
1553	 66.16	0	1831847..1833232	-	461	83717590	-	BTH_II1560	-	amino acid permease
1554	 74.51	+1	1833931..1834032	-	33	83716296	-	BTH_II1561	-	hypothetical protein
1555	 72.76	+1	1834048..1834884	-	278	83717301	-	BTH_II1562	-	short chain dehydrogenase/reductase family oxidoreductase
1556	 71.71	0	1835165..1836373	-	402	83716820	-	BTH_II1563	-	major facilitator superfamily protein
1557	 70.61	0	1836531..1837571	-	346	83716271	-	BTH_II1564	-	dedA family protein
1558	 68.76	0	1837887..1838936	-	349	83716858	-	BTH_II1565	-	alcohol dehydrogenase, zinc-containing
1559	 70.12	0	1839189..1840028	+	279	83716215	-	BTH_II1566	-	universal stress protein family protein
1560	 71.92	0	1840199..1840693	+	164	83718319	-	BTH_II1567	-	universal stress protein
1561	 71.57	0	1840693..1841529	+	278	83717547	-	BTH_II1568	-	universal stress protein family protein
1562	 69.72	0	1841874..1842332	-	152	83716121	-	BTH_II1569	-	universal stress protein
1563	 66.67	0	1842883..1843530	+	215	83716628	-	BTH_II1570	-	LuxR family DNA-binding response regulator
1564	 62.45	-1	1843597..1843833	-	78	83717459	-	BTH_II1571	-	hypothetical protein
1565	 66.47	0	1843894..1844412	-	172	83718095	-	BTH_II1572	-	hypothetical protein
1566	 68.42	0	1844406..1844861	+	151	83718383	-	BTH_II1573	-	hypothetical protein
1567	 62.96	-1	1845099..1845287	-	62	83716522	-	BTH_II1574	-	hypothetical protein
1568	 68.13	0	1845639..1846388	+	249	83716276	-	BTH_II1575	-	DNA-binding protein
1569	 66.84	0	1846962..1848128	+	388	83717041	-	BTH_II1576	-	putative monooxygenase
1570	 67.61	0	1848542..1848859	+	105	83717358	-	BTH_II1577	-	hypothetical protein
1571	 63.68	0	1849092..1850900	-	602	83717827	-	BTH_II1578	-	collagenase, putative
1572	 64.17	0	1851946..1852947	+	333	83716533	-	BTH_II1579	-	OmpA family domain-containing protein
1573	 67.12	0	1852996..1853439	+	147	83717362	-	BTH_II1580	-	hypothetical protein
1574	 70.62	0	1854717..1854893	+	58	83716409	-	BTH_II1581	-	hypothetical protein
1575	 52.88	-2	1854866..1855489	-	207	83717592	-	BTH_II1582	-	hypothetical protein
1576	 72.36	+1	1855830..1862024	+	2064	83717062	-	BTH_II1583	-	alpha-2-macroglobulin family protein
1577	 74.87	+1	1862032..1864566	+	844	83717775	pbpC	BTH_II1584	-	penicillin-binding protein 1C
1578	 75.49	+1	1864591..1864692	+	33	83717726	-	BTH_II1585	-	hypothetical protein
1579	 67.97	0	1864848..1865459	-	203	83718338	-	BTH_II1586	-	CheC family protein
1580	 65.04	0	1865452..1865820	-	122	83716053	-	BTH_II1587	-	response regulator
1581	 67.79	0	1865831..1867339	-	502	83716845	-	BTH_II1588	-	sensor histidine kinase
1582	 63.75	0	1867556..1868035	-	159	83716441	-	BTH_II1589	-	hypothetical protein
1583	 65.20	0	1868657..1869886	+	409	83716973	-	BTH_II1590	-	hypothetical protein
1584	 64.36	0	1870028..1870678	+	216	83717815	-	BTH_II1591	-	2OG-Fe(II) oxygenase family oxidoreductase
1585	 67.69	0	1871032..1871421	-	129	83717704	-	BTH_II1592	-	hypothetical protein
1586	 68.08	0	1871488..1872690	-	400	83717021	-	BTH_II1593	-	aromatic amino acid aminotransferase
1587	 64.79	0	1872722..1874107	-	461	83716447	-	BTH_II1594	-	aromatic amino acid transport protein
1588	 63.25	0	1874441..1874908	+	155	83717544	-	BTH_II1595	-	bkd operon transcriptional regulator
1589	 65.67	0	1875104..1875706	+	200	83716913	-	BTH_II1596	-	hypothetical protein
1590	 67.63	0	1875766..1876386	-	206	83716235	-	BTH_II1597	-	hemolysin III
1591	 65.61	0	1876665..1877801	-	378	83717937	-	BTH_II1598	-	amino acid ABC transporter, periplasmic amino acid-binding protein, putative
1592	 64.38	0	1877939..1878376	-	145	83716661	-	BTH_II1599	-	hypothetical protein
1593	 67.60	0	1878470..1879111	+	213	83716120	-	BTH_II1600	-	TetR family transcriptional regulator
1594	 66.08	0	1879128..1879466	-	112	83716511	-	BTH_II1601	-	hypothetical protein
1595	 68.08	0	1879506..1880282	-	258	83718351	-	BTH_II1602	-	short chain dehydrogenase
1596	 69.75	0	1880479..1881321	-	280	83717373	-	BTH_II1603	-	fumarylacetoacetate hydrolase family protein
1597	 70.97	0	1881381..1882124	-	247	83717019	-	BTH_II1604	-	short chain dehydrogenase/reductase family oxidoreductase
1598	 74.98	+1	1882283..1883329	-	348	83717860	-	BTH_II1605	-	hydrolase
1599	 71.16	0	1883385..1884674	-	429	83717398	-	BTH_II1606	-	dehydratase; D-galactarate dehydratase; altronate dehydratase
1600	 71.03	0	1884766..1885086	-	106	83716075	-	BTH_II1607	-	D-galactarate dehydratase/Altronate hydrolase family protein
1601	 70.76	0	1885083..1886108	-	341	83718386	-	BTH_II1608	-	sugar ABC transporter, permease protein
1602	 72.84	+1	1886098..1887636	-	512	83717722	-	BTH_II1609	-	sugar ABC transporter, ATP-binding protein
1603	 67.65	0	1887633..1888646	-	337	83717073	-	BTH_II1610	-	sugar ABC transporter, periplasmic sugar-binding protein
1604	 68.94	0	1888767..1889645	+	292	83717696	-	BTH_II1611	-	IclR family transcriptional regulator
1605	 68.79	0	1889766..1890236	-	156	83717488	soxR	BTH_II1612	-	redox-sensitive transcriptional activator SoxR
1606	 73.79	+1	1890550..1890900	+	116	83716359	-	BTH_II1613	-	RND family efflux transporter MFP subunit
1607	 64.67	0	1891241..1892140	-	299	83718001	-	BTH_II1615	-	LysR family transcriptional regulator
1608	 63.96	0	1892249..1893394	+	381	83717684	-	BTH_II1616	-	C4-dicarboxylate transporter/malic acid transport protein, putative
1609	 63.13	-1	1893471..1894460	+	329	83717185	-	BTH_II1617	-	malate dehydrogenase
1610	 63.43	0	1895005..1896612	+	535	83716344	-	BTH_II1618	-	cytochrome c oxidase subunit transmembrane protein
1611	 63.83	0	1896625..1897224	+	199	83718245	-	BTH_II1619	-	FixOc
1612	 67.54	0	1897221..1897790	+	189	83717563	-	BTH_II1620	-	outer membrane nitrite reductase, putative
1613	 70.47	0	1897787..1900072	+	761	83718002	-	BTH_II1621	-	copper-translocating P-type ATPase
1614	 64.13	0	1899970..1901310	+	446	83716461	-	BTH_II1622	-	sulfite:cytochrome c oxidoreductase subunit A
1615	 68.68	0	1901360..1902550	+	396	83717181	-	BTH_II1623	-	hypothetical protein
1616	 67.63	0	1902615..1903031	-	138	83717735	-	BTH_II1624	-	hypothetical protein
1617	 72.56	+1	1903396..1904328	-	310	83717359	-	BTH_II1625	-	senescence marker protein-30 family protein
1618	 67.65	0	1904498..1905517	-	339	83717881	araH	BTH_II1626	-	L-arabinose transporter permease protein
1619	 72.24	+1	1905553..1907130	-	525	83716300	araG	BTH_II1627	-	L-arabinose transporter ATP-binding protein
1620	 68.23	0	1907153..1908175	-	340	83717050	-	BTH_II1628	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
1621	 74.09	+1	1908421..1909350	-	309	83716868	-	BTH_II1629	-	dehydrogenase
1622	 70.32	0	1909384..1910313	-	309	83717217	-	BTH_II1630	-	dihydrodipicolinate synthase, putative
1623	 76.60	+2	1910490..1912100	-	536	83716358	-	BTH_II1631	-	aldehyde dehydrogenase family protein
1624	 69.98	0	1912115..1913866	-	583	83718062	-	BTH_II1632	-	dihydroxy-acid dehydratase
1625	 69.38	0	1913939..1914934	+	331	83716118	-	BTH_II1633	-	LysR family transcriptional regulator
1626	 67.29	0	1915992..1916636	+	214	83716715	-	BTH_II1634	-	LuxR family DNA-binding response regulator
1627	 73.39	+1	1917112..1918092	+	326	83718136	-	BTH_II1635	-	twin-arginine translocation pathway signal sequence domain-containing protein
1628	 67.33	0	1918574..1920241	+	555	83716579	-	BTH_II1636	-	phosphoesterase family protein
1629	 70.66	0	1920321..1921898	+	525	83717380	-	BTH_II1637	-	di-haem cytochrome c peroxidase family protein
1630	 60.27	-1	1922141..1922515	+	124	83717597	-	BTH_II1638	-	hypothetical protein
1631	 66.91	0	1922799..1924055	-	418	83717088	-	BTH_II1639	-	cytosine deaminase
1632	 67.15	0	1924055..1925287	-	410	83717624	-	BTH_II1640	-	DNA-binding protein
1633	 68.41	0	1925292..1926554	-	420	83716067	codB	BTH_II1641	-	cytosine permease
1634	 72.98	+1	1927096..1927491	-	131	83716577	-	BTH_II1642	-	glyoxalase family protein
1635	 65.97	0	1927527..1928681	-	384	83717514	-	BTH_II1643	-	outer membrane porin OpcP
1636	 67.97	0	1928693..1929304	+	203	83718036	-	BTH_II1644	-	hypothetical protein
1637	 65.71	0	1929535..1929744	-	69	83716462	-	BTH_II1645	-	hypothetical protein
1638	 68.45	0	1929791..1930855	-	354	83717101	-	BTH_II1646	-	LysR family transcriptional regulator
1639	 70.52	0	1931007..1933238	+	743	83717452	-	BTH_II1647	-	fusaric acid resistance domain-containing protein
1640	 68.52	0	1933366..1933581	+	71	83718131	-	BTH_II1648	-	hypothetical protein
1641	 69.11	0	1933718..1935397	+	559	83718012	-	BTH_II1649	-	putative lipoprotein
1642	 73.94	+1	1935388..1936611	-	407	83717332	-	BTH_II1650	-	D-aminopeptidase, putative
1643	 68.73	0	1936575..1937981	-	468	83717879	-	BTH_II1651	-	amino acid permease
1644	 69.51	0	1938130..1938903	+	257	83716173	-	BTH_II1652	-	LuxR family transcriptional regulator
1645	 66.94	0	1939074..1939445	+	123	83717129	-	BTH_II1653	-	hypothetical protein
1646	 71.12	0	1940104..1940664	-	186	83717650	-	BTH_II1654	-	lipoprotein NlpD, putative
1647	 60.65	-1	1941163..1942143	-	326	83716800	-	BTH_II1655	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.