IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1513	 58.53	-2	1785280..1785660	+	126	83718098	-	BTH_II1519	-	IS4 family transposase
1514	 62.67	-1	1785834..1786958	-	374	83718334	-	BTH_II1520	-	outer membrane porin OpcP
1515	 73.04	+1	1787543..1787950	+	135	83716334	-	BTH_II1521	-	Tat pathway signal sequence domain-containing protein
1516	 63.65	0	1788064..1788561	+	165	83716707	-	BTH_II1522	-	ArsR family transcriptional regulator
1517	 69.30	0	1788611..1789672	+	353	83717694	-	BTH_II1523	-	N-ethylmaleimide reductase
1518	 67.82	0	1789793..1790398	-	201	83718088	-	BTH_II1524	-	acetyltransferase
1519	 66.09	0	1790275..1790796	+	173	83717903	-	BTH_II1525	-	transporter, putative
1520	 59.37	-1	1791422..1792120	-	232	83717495	-	BTH_II1527	-	hypothetical protein
1521	 60.99	-1	1792173..1793441	-	422	83716088	-	BTH_II1528	-	transposase mutator family protein
1522	 56.74	-2	1793465..1794391	-	308	83716987	-	BTH_II1529	-	hypothetical protein
1523	 59.86	-1	1794417..1795811	-	464	83716458	-	BTH_II1530	-	hypothetical protein
1524	 67.52	0	1795811..1798153	-	780	83716374	-	BTH_II1531	-	Rhs element Vgr protein, putative
1525	 64.26	0	1798964..1800166	-	400	83717030	-	BTH_II1532	-	outer membrane porin OpcP
1526	 68.58	0	1800395..1801333	-	312	83717799	-	BTH_II1533	-	putative ethanolamine operon transcriptional regulator
1527	 73.43	+1	1801422..1802042	-	206	83716571	-	BTH_II1534	-	hypothetical protein
1528	 67.87	0	1802039..1803529	-	496	83716788	-	BTH_II1535	-	amino acid permease
1529	 67.70	0	1803682..1805031	-	449	83716615	-	BTH_II1536	-	hypothetical protein
1530	 70.38	0	1805069..1806790	-	573	83718371	-	BTH_II1537	-	phenylacetaldehyde dehydrogenase
1531	 71.16	0	1806855..1807721	-	288	83717609	-	BTH_II1538	-	LuxR family transcriptional regulator
1532	 74.37	+1	1807877..1808707	-	276	83717093	-	BTH_II1539	-	3-ketoacyl-(acyl-carrier-protein) reductase
1533	 68.25	0	1808704..1809963	-	419	83717501	-	BTH_II1540	-	hypothetical protein
1534	 66.88	0	1810018..1810965	-	315	83718237	-	BTH_II1541	-	aldo/keto reductase family oxidoreductase
1535	 71.82	0	1811351..1812049	-	232	83716198	-	BTH_II1542	-	DSBA-like thioredoxin domain-containing protein
1536	 70.78	0	1812138..1813037	+	299	83716864	-	BTH_II1543	-	LysR family transcriptional regulator
1537	 67.19	0	1813350..1814891	-	513	83716360	-	BTH_II1544	-	flagellar hook-associated protein 2
1538	 63.18	0	1815390..1816652	+	420	83717044	-	BTH_II1545	-	ISBma3, transposase
1539	 73.90	+1	1816682..1817926	-	414	83717708	-	BTH_II1546	-	allantoate amidohydrolase
1540	 74.11	+1	1817913..1818731	-	272	83718292	-	BTH_II1547	-	L-2-amino-thiazoline-4-carboxylic acid hydrolase
1541	 72.53	+1	1818754..1819980	-	408	83716190	-	BTH_II1548	-	amino acid ABC transporter, periplasmic amino acid-binding protein, putative
1542	 69.58	0	1820248..1821138	+	296	83717256	-	BTH_II1549	-	glycine cleavage system transcriptional activator
1543	 71.72	0	1821275..1823512	-	745	83717546	-	BTH_II1550	-	DNA repair helicase
1544	 71.55	0	1823536..1825236	-	566	83716242	-	BTH_II1551	-	Uvs005
1545	 71.91	0	1825441..1825917	-	158	83716622	-	BTH_II1552	-	hypothetical protein
1546	 65.24	0	1825957..1826166	-	69	83717209	-	BTH_II1553	-	hypothetical protein
1547	 69.24	0	1826226..1827158	+	310	83716546	-	BTH_II1554	-	ribokinase
1548	 70.26	0	1827184..1828323	-	379	83718230	-	BTH_II1555	-	hypothetical protein
1549	 62.94	-1	1828959..1829843	+	294	83718084	-	BTH_II1556	-	hypothetical protein
1550	 64.66	0	1829874..1830470	+	198	83718357	-	BTH_II1557	-	hypothetical protein
1551	 58.84	-1	1830621..1831016	-	131	83716776	-	BTH_II1558	-	H-NS histone family protein
1552	 56.38	-2	1831062..1831304	+	80	83718127	-	BTH_II1559	-	DNA-binding protein
1553	 66.16	0	1831847..1833232	-	461	83717590	-	BTH_II1560	-	amino acid permease
1554	 74.51	+1	1833931..1834032	-	33	83716296	-	BTH_II1561	-	hypothetical protein
1555	 72.76	+1	1834048..1834884	-	278	83717301	-	BTH_II1562	-	short chain dehydrogenase/reductase family oxidoreductase
1556	 71.71	0	1835165..1836373	-	402	83716820	-	BTH_II1563	-	major facilitator superfamily protein
1557	 70.61	0	1836531..1837571	-	346	83716271	-	BTH_II1564	-	dedA family protein
1558	 68.76	0	1837887..1838936	-	349	83716858	-	BTH_II1565	-	alcohol dehydrogenase, zinc-containing
1559	 70.12	0	1839189..1840028	+	279	83716215	-	BTH_II1566	-	universal stress protein family protein
1560	 71.92	0	1840199..1840693	+	164	83718319	-	BTH_II1567	-	universal stress protein
1561	 71.57	0	1840693..1841529	+	278	83717547	-	BTH_II1568	-	universal stress protein family protein
1562	 69.72	0	1841874..1842332	-	152	83716121	-	BTH_II1569	-	universal stress protein
1563	 66.67	0	1842883..1843530	+	215	83716628	-	BTH_II1570	-	LuxR family DNA-binding response regulator
1564	 62.45	-1	1843597..1843833	-	78	83717459	-	BTH_II1571	-	hypothetical protein
1565	 66.47	0	1843894..1844412	-	172	83718095	-	BTH_II1572	-	hypothetical protein
1566	 68.42	0	1844406..1844861	+	151	83718383	-	BTH_II1573	-	hypothetical protein
1567	 62.96	-1	1845099..1845287	-	62	83716522	-	BTH_II1574	-	hypothetical protein
1568	 68.13	0	1845639..1846388	+	249	83716276	-	BTH_II1575	-	DNA-binding protein
1569	 66.84	0	1846962..1848128	+	388	83717041	-	BTH_II1576	-	putative monooxygenase
1570	 67.61	0	1848542..1848859	+	105	83717358	-	BTH_II1577	-	hypothetical protein
1571	 63.68	0	1849092..1850900	-	602	83717827	-	BTH_II1578	-	collagenase, putative
1572	 64.17	0	1851946..1852947	+	333	83716533	-	BTH_II1579	-	OmpA family domain-containing protein
1573	 67.12	0	1852996..1853439	+	147	83717362	-	BTH_II1580	-	hypothetical protein
1574	 70.62	0	1854717..1854893	+	58	83716409	-	BTH_II1581	-	hypothetical protein
1575	 52.88	-2	1854866..1855489	-	207	83717592	-	BTH_II1582	-	hypothetical protein
1576	 72.36	+1	1855830..1862024	+	2064	83717062	-	BTH_II1583	-	alpha-2-macroglobulin family protein
1577	 74.87	+1	1862032..1864566	+	844	83717775	pbpC	BTH_II1584	-	penicillin-binding protein 1C
1578	 75.49	+1	1864591..1864692	+	33	83717726	-	BTH_II1585	-	hypothetical protein
1579	 67.97	0	1864848..1865459	-	203	83718338	-	BTH_II1586	-	CheC family protein
1580	 65.04	0	1865452..1865820	-	122	83716053	-	BTH_II1587	-	response regulator
1581	 67.79	0	1865831..1867339	-	502	83716845	-	BTH_II1588	-	sensor histidine kinase
1582	 63.75	0	1867556..1868035	-	159	83716441	-	BTH_II1589	-	hypothetical protein
1583	 65.20	0	1868657..1869886	+	409	83716973	-	BTH_II1590	-	hypothetical protein
1584	 64.36	0	1870028..1870678	+	216	83717815	-	BTH_II1591	-	2OG-Fe(II) oxygenase family oxidoreductase
1585	 67.69	0	1871032..1871421	-	129	83717704	-	BTH_II1592	-	hypothetical protein
1586	 68.08	0	1871488..1872690	-	400	83717021	-	BTH_II1593	-	aromatic amino acid aminotransferase
1587	 64.79	0	1872722..1874107	-	461	83716447	-	BTH_II1594	-	aromatic amino acid transport protein
1588	 63.25	0	1874441..1874908	+	155	83717544	-	BTH_II1595	-	bkd operon transcriptional regulator
1589	 65.67	0	1875104..1875706	+	200	83716913	-	BTH_II1596	-	hypothetical protein
1590	 67.63	0	1875766..1876386	-	206	83716235	-	BTH_II1597	-	hemolysin III
1591	 65.61	0	1876665..1877801	-	378	83717937	-	BTH_II1598	-	amino acid ABC transporter, periplasmic amino acid-binding protein, putative
1592	 64.38	0	1877939..1878376	-	145	83716661	-	BTH_II1599	-	hypothetical protein
1593	 67.60	0	1878470..1879111	+	213	83716120	-	BTH_II1600	-	TetR family transcriptional regulator
1594	 66.08	0	1879128..1879466	-	112	83716511	-	BTH_II1601	-	hypothetical protein
1595	 68.08	0	1879506..1880282	-	258	83718351	-	BTH_II1602	-	short chain dehydrogenase
1596	 69.75	0	1880479..1881321	-	280	83717373	-	BTH_II1603	-	fumarylacetoacetate hydrolase family protein
1597	 70.97	0	1881381..1882124	-	247	83717019	-	BTH_II1604	-	short chain dehydrogenase/reductase family oxidoreductase
1598	 74.98	+1	1882283..1883329	-	348	83717860	-	BTH_II1605	-	hydrolase
1599	 71.16	0	1883385..1884674	-	429	83717398	-	BTH_II1606	-	dehydratase; D-galactarate dehydratase; altronate dehydratase
1600	 71.03	0	1884766..1885086	-	106	83716075	-	BTH_II1607	-	D-galactarate dehydratase/Altronate hydrolase family protein
1601	 70.76	0	1885083..1886108	-	341	83718386	-	BTH_II1608	-	sugar ABC transporter, permease protein
1602	 72.84	+1	1886098..1887636	-	512	83717722	-	BTH_II1609	-	sugar ABC transporter, ATP-binding protein
1603	 67.65	0	1887633..1888646	-	337	83717073	-	BTH_II1610	-	sugar ABC transporter, periplasmic sugar-binding protein
1604	 68.94	0	1888767..1889645	+	292	83717696	-	BTH_II1611	-	IclR family transcriptional regulator
1605	 68.79	0	1889766..1890236	-	156	83717488	soxR	BTH_II1612	-	redox-sensitive transcriptional activator SoxR
1606	 73.79	+1	1890550..1890900	+	116	83716359	-	BTH_II1613	-	RND family efflux transporter MFP subunit
1607	 64.67	0	1891241..1892140	-	299	83718001	-	BTH_II1615	-	LysR family transcriptional regulator
1608	 63.96	0	1892249..1893394	+	381	83717684	-	BTH_II1616	-	C4-dicarboxylate transporter/malic acid transport protein, putative
1609	 63.13	-1	1893471..1894460	+	329	83717185	-	BTH_II1617	-	malate dehydrogenase
1610	 63.43	0	1895005..1896612	+	535	83716344	-	BTH_II1618	-	cytochrome c oxidase subunit transmembrane protein
1611	 63.83	0	1896625..1897224	+	199	83718245	-	BTH_II1619	-	FixOc
1612	 67.54	0	1897221..1897790	+	189	83717563	-	BTH_II1620	-	outer membrane nitrite reductase, putative
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.