IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1472	 63.39	0	1746465..1746983	+	172	83717641	-	BTH_II1478	-	transcriptional regulator family protein
1473	 66.49	0	1747102..1747659	-	185	83716135	-	BTH_II1479	-	hypothetical protein
1474	 75.83	+1	1747678..1747797	-	39	83716487	-	BTH_II1480	-	hypothetical protein
1475	 66.45	0	1747908..1748810	-	300	83716923	-	BTH_II1481	-	N-hydroxyarylamine O-acetyltransferase
1476	 68.61	0	1748895..1749614	-	239	83716103	-	BTH_II1482	-	hypothetical protein
1477	 57.78	-2	1750073..1750297	+	74	83718222	-	BTH_II1483	-	hypothetical protein
1478	 65.51	0	1750489..1751790	-	433	83717577	-	BTH_II1484	-	methionine gamma-lyase
1479	 62.08	-1	1751978..1752457	+	159	83717717	-	BTH_II1485	-	AsnC family transcriptional regulator
1480	 68.27	0	1752559..1754052	-	497	83717071	-	BTH_II1486	-	amidase
1481	 62.55	-1	1754464..1754997	+	177	83717852	-	BTH_II1487	-	UspA family protein
1482	 66.22	0	1755173..1756069	-	298	83717436	-	BTH_II1488	-	OmpA/SmpA/OmlA family outer membrane lipoprotein
1483	 69.55	0	1756063..1758558	-	831	83717995	-	BTH_II1489	-	Hep_Hag family protein
1484	 67.66	0	1759091..1760497	-	468	83717396	-	BTH_II1490	-	major facilitator family transporter
1485	 70.35	0	1760532..1761779	-	415	83717164	-	BTH_II1491	-	pyridine nucleotide-disulfide oxidoreductase, class I
1486	 68.01	0	1761772..1762737	-	321	83716179	-	BTH_II1492	-	glyoxalase family protein
1487	 70.35	0	1762754..1764220	-	488	83718216	-	BTH_II1493	-	aldehyde dehydrogenase family protein
1488	 72.18	+1	1764266..1765081	-	271	83717707	-	BTH_II1494	-	L-aspartate dehydrogenase
1489	 69.71	0	1765074..1766747	-	557	83717500	-	BTH_II1495	-	hypothetical protein
1490	 69.35	0	1766740..1767522	-	260	83716386	-	BTH_II1496	-	short chain dehydrogenase
1491	 67.95	0	1767534..1768388	-	284	83717760	-	BTH_II1497	-	IclR family transcriptional regulator
1492	 73.07	+1	1768385..1769290	-	301	83718359	-	BTH_II1498	-	alpha/beta fold family hydrolase
1493	 65.15	0	1769307..1769834	-	175	83717281	-	BTH_II1499	-	hypothetical protein
1494	 72.37	+1	1769873..1770643	-	256	83716773	-	BTH_II1500	-	short chain dehydrogenase
1495	 67.70	0	1770640..1771707	-	355	83716647	-	BTH_II1501	-	Rieske family iron-sulfur cluster-binding protein
1496	 68.27	0	1771742..1772053	-	103	83716263	-	BTH_II1502	-	hypothetical protein
1497	 63.52	0	1772055..1772372	-	105	83718023	-	BTH_II1503	-	naphthalene 1,2-dioxygenase system ferredoxin component
1498	 62.44	-1	1772405..1773895	+	496	83717059	-	BTH_II1504	-	outer membrane porin OpcP
1499	 69.72	0	1774200..1775150	-	316	83717060	-	BTH_II1505	-	IclR family transcriptional regulator
1500	 70.39	0	1775229..1775846	-	205	83716390	-	BTH_II1506	-	2OG-Fe(II) oxygenase family oxidoreductase
1501	 66.01	0	1775962..1776570	+	202	83718306	-	BTH_II1507	-	hypothetical protein
1502	 72.36	+1	1776630..1777841	+	403	83716582	-	BTH_II1508	-	Ser/Thr protein phosphatase family protein
1503	 65.97	0	1778325..1779041	+	238	83717315	-	BTH_II1509	-	MgtC family protein
1504	 63.47	0	1779070..1779789	-	239	83716915	-	BTH_II1510	-	ATP-dependent transcription regulator LuxR
1505	 68.69	0	1779863..1780306	+	147	83718133	-	BTH_II1511	-	hypothetical protein
1506	 66.83	0	1780524..1781135	+	203	83717635	-	BTH_II1512	-	N-acyl homoserine lactone synthase
1507	 70.60	0	1781224..1782036	+	270	83717077	-	BTH_II1513	-	hypothetical protein
1508	 63.96	0	1781999..1782664	-	221	83717631	ribA	BTH_II1514	-	GTP cyclohydrolase II
1509	 58.66	-2	1782829..1783290	+	153	83716568	-	BTH_II1515	-	CBS domain-containing protein
1510	 65.20	0	1783502..1783843	-	113	83717975	-	BTH_II1516	-	hypothetical protein
1511	 58.90	-1	1784385..1784783	+	132	83716392	-	BTH_II1517	-	nucleoside diphosphate kinase regulator, putative
1512	 55.88	-2	1784903..1785310	+	135	83716114	-	BTH_II1518	-	transposase, putative
1513	 58.53	-2	1785280..1785660	+	126	83718098	-	BTH_II1519	-	IS4 family transposase
1514	 62.67	-1	1785834..1786958	-	374	83718334	-	BTH_II1520	-	outer membrane porin OpcP
1515	 73.04	+1	1787543..1787950	+	135	83716334	-	BTH_II1521	-	Tat pathway signal sequence domain-containing protein
1516	 63.65	0	1788064..1788561	+	165	83716707	-	BTH_II1522	-	ArsR family transcriptional regulator
1517	 69.30	0	1788611..1789672	+	353	83717694	-	BTH_II1523	-	N-ethylmaleimide reductase
1518	 67.82	0	1789793..1790398	-	201	83718088	-	BTH_II1524	-	acetyltransferase
1519	 66.09	0	1790275..1790796	+	173	83717903	-	BTH_II1525	-	transporter, putative
1520	 59.37	-1	1791422..1792120	-	232	83717495	-	BTH_II1527	-	hypothetical protein
1521	 60.99	-1	1792173..1793441	-	422	83716088	-	BTH_II1528	-	transposase mutator family protein
1522	 56.74	-2	1793465..1794391	-	308	83716987	-	BTH_II1529	-	hypothetical protein
1523	 59.86	-1	1794417..1795811	-	464	83716458	-	BTH_II1530	-	hypothetical protein
1524	 67.52	0	1795811..1798153	-	780	83716374	-	BTH_II1531	-	Rhs element Vgr protein, putative
1525	 64.26	0	1798964..1800166	-	400	83717030	-	BTH_II1532	-	outer membrane porin OpcP
1526	 68.58	0	1800395..1801333	-	312	83717799	-	BTH_II1533	-	putative ethanolamine operon transcriptional regulator
1527	 73.43	+1	1801422..1802042	-	206	83716571	-	BTH_II1534	-	hypothetical protein
1528	 67.87	0	1802039..1803529	-	496	83716788	-	BTH_II1535	-	amino acid permease
1529	 67.70	0	1803682..1805031	-	449	83716615	-	BTH_II1536	-	hypothetical protein
1530	 70.38	0	1805069..1806790	-	573	83718371	-	BTH_II1537	-	phenylacetaldehyde dehydrogenase
1531	 71.16	0	1806855..1807721	-	288	83717609	-	BTH_II1538	-	LuxR family transcriptional regulator
1532	 74.37	+1	1807877..1808707	-	276	83717093	-	BTH_II1539	-	3-ketoacyl-(acyl-carrier-protein) reductase
1533	 68.25	0	1808704..1809963	-	419	83717501	-	BTH_II1540	-	hypothetical protein
1534	 66.88	0	1810018..1810965	-	315	83718237	-	BTH_II1541	-	aldo/keto reductase family oxidoreductase
1535	 71.82	0	1811351..1812049	-	232	83716198	-	BTH_II1542	-	DSBA-like thioredoxin domain-containing protein
1536	 70.78	0	1812138..1813037	+	299	83716864	-	BTH_II1543	-	LysR family transcriptional regulator
1537	 67.19	0	1813350..1814891	-	513	83716360	-	BTH_II1544	-	flagellar hook-associated protein 2
1538	 63.18	0	1815390..1816652	+	420	83717044	-	BTH_II1545	-	ISBma3, transposase
1539	 73.90	+1	1816682..1817926	-	414	83717708	-	BTH_II1546	-	allantoate amidohydrolase
1540	 74.11	+1	1817913..1818731	-	272	83718292	-	BTH_II1547	-	L-2-amino-thiazoline-4-carboxylic acid hydrolase
1541	 72.53	+1	1818754..1819980	-	408	83716190	-	BTH_II1548	-	amino acid ABC transporter, periplasmic amino acid-binding protein, putative
1542	 69.58	0	1820248..1821138	+	296	83717256	-	BTH_II1549	-	glycine cleavage system transcriptional activator
1543	 71.72	0	1821275..1823512	-	745	83717546	-	BTH_II1550	-	DNA repair helicase
1544	 71.55	0	1823536..1825236	-	566	83716242	-	BTH_II1551	-	Uvs005
1545	 71.91	0	1825441..1825917	-	158	83716622	-	BTH_II1552	-	hypothetical protein
1546	 65.24	0	1825957..1826166	-	69	83717209	-	BTH_II1553	-	hypothetical protein
1547	 69.24	0	1826226..1827158	+	310	83716546	-	BTH_II1554	-	ribokinase
1548	 70.26	0	1827184..1828323	-	379	83718230	-	BTH_II1555	-	hypothetical protein
1549	 62.94	-1	1828959..1829843	+	294	83718084	-	BTH_II1556	-	hypothetical protein
1550	 64.66	0	1829874..1830470	+	198	83718357	-	BTH_II1557	-	hypothetical protein
1551	 58.84	-1	1830621..1831016	-	131	83716776	-	BTH_II1558	-	H-NS histone family protein
1552	 56.38	-2	1831062..1831304	+	80	83718127	-	BTH_II1559	-	DNA-binding protein
1553	 66.16	0	1831847..1833232	-	461	83717590	-	BTH_II1560	-	amino acid permease
1554	 74.51	+1	1833931..1834032	-	33	83716296	-	BTH_II1561	-	hypothetical protein
1555	 72.76	+1	1834048..1834884	-	278	83717301	-	BTH_II1562	-	short chain dehydrogenase/reductase family oxidoreductase
1556	 71.71	0	1835165..1836373	-	402	83716820	-	BTH_II1563	-	major facilitator superfamily protein
1557	 70.61	0	1836531..1837571	-	346	83716271	-	BTH_II1564	-	dedA family protein
1558	 68.76	0	1837887..1838936	-	349	83716858	-	BTH_II1565	-	alcohol dehydrogenase, zinc-containing
1559	 70.12	0	1839189..1840028	+	279	83716215	-	BTH_II1566	-	universal stress protein family protein
1560	 71.92	0	1840199..1840693	+	164	83718319	-	BTH_II1567	-	universal stress protein
1561	 71.57	0	1840693..1841529	+	278	83717547	-	BTH_II1568	-	universal stress protein family protein
1562	 69.72	0	1841874..1842332	-	152	83716121	-	BTH_II1569	-	universal stress protein
1563	 66.67	0	1842883..1843530	+	215	83716628	-	BTH_II1570	-	LuxR family DNA-binding response regulator
1564	 62.45	-1	1843597..1843833	-	78	83717459	-	BTH_II1571	-	hypothetical protein
1565	 66.47	0	1843894..1844412	-	172	83718095	-	BTH_II1572	-	hypothetical protein
1566	 68.42	0	1844406..1844861	+	151	83718383	-	BTH_II1573	-	hypothetical protein
1567	 62.96	-1	1845099..1845287	-	62	83716522	-	BTH_II1574	-	hypothetical protein
1568	 68.13	0	1845639..1846388	+	249	83716276	-	BTH_II1575	-	DNA-binding protein
1569	 66.84	0	1846962..1848128	+	388	83717041	-	BTH_II1576	-	putative monooxygenase
1570	 67.61	0	1848542..1848859	+	105	83717358	-	BTH_II1577	-	hypothetical protein
1571	 63.68	0	1849092..1850900	-	602	83717827	-	BTH_II1578	-	collagenase, putative
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.