IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1425	 55.13	-2	1692617..1692772	+	51	83716508	-	BTH_II1431	-	hypothetical protein
1426	 59.11	-1	1692872..1693096	+	74	83716671	-	BTH_II1432	-	hypothetical protein
1427	 54.88	-2	1693408..1694001	-	197	83716166	-	BTH_II1433	-	hypothetical protein
1428	 65.98	0	1694011..1698672	-	1553	83717122	-	BTH_II1434	-	YD repeat-containing protein
1429	 65.71	0	1698724..1699245	-	173	83716060	-	BTH_II1435	-	hypothetical protein
1430	 63.04	-1	1699271..1701256	-	661	83718180	-	BTH_II1436	-	Rhs element Vgr protein
1431	 69.53	0	1701485..1702774	+	429	83717023	-	BTH_II1437	-	hypothetical protein
1432	 75.46	+1	1702717..1702932	-	71	83717728	-	BTH_II1438	-	hypothetical protein
1433	 72.33	+1	1703024..1703182	+	52	83716353	-	BTH_II1439	-	hypothetical protein
1434	 68.69	0	1703484..1704374	+	296	83716267	-	BTH_II1440	-	hypothetical protein
1435	 71.23	0	1704395..1704964	+	189	83718107	-	BTH_II1441	-	D-alanyl-D-alanine dipeptidase
1436	 65.60	0	1704997..1706688	+	563	83718344	-	BTH_II1442	-	ABC transporter, periplasmic substrate-binding protein
1437	 68.08	0	1706787..1707779	+	330	83716523	-	BTH_II1443	-	ABC transporter, permease protein
1438	 71.66	0	1707822..1708763	+	313	83716171	-	BTH_II1444	-	ABC transporter, permease protein
1439	 72.22	+1	1708765..1709646	+	293	83716673	-	BTH_II1445	-	ABC transporter, ATP-binding protein
1440	 70.70	0	1709643..1710410	+	255	83716116	-	BTH_II1446	-	ABC transporter system, ATP-binding protein
1441	 67.82	0	1710685..1710945	+	86	83717419	-	BTH_II1447	-	LysR family transcriptional regulator
1442	 68.75	0	1711246..1711581	+	111	83718081	-	BTH_II1448	-	hypothetical protein
1443	 67.21	0	1711722..1712639	-	305	83716338	-	BTH_II1449	-	LysR family transcriptional regulator
1444	 69.56	0	1713084..1714052	-	322	83717141	-	BTH_II1450	-	class A beta-lactamase precursor
1445	 70.48	0	1714197..1715351	-	384	83717584	-	BTH_II1451	-	lipoprotein NlpD, putative
1446	 59.39	-1	1715514..1715678	-	54	83717634	-	BTH_II1452	-	hypothetical protein
1447	 67.11	0	1715783..1716694	+	303	83718349	-	BTH_II1453	-	LysR family transcriptional regulator
1448	 64.42	0	1717177..1718421	-	414	83716488	-	BTH_II1454	-	outer membrane porin OpcP
1449	 68.60	0	1718614..1719909	+	431	83716709	-	BTH_II1455	-	opgC protein, putative
1450	 69.62	0	1719974..1720819	+	281	83718051	-	BTH_II1456	-	esterase, putative
1451	 73.87	+1	1720791..1721762	-	323	83717235	-	BTH_II1457	-	ornithine cyclodeaminase
1452	 69.17	0	1722118..1722516	-	132	83716243	-	BTH_II1458	-	4-carboxymuconolactone decarboxylase
1453	 71.04	0	1722926..1723816	+	296	83717657	-	BTH_II1459	-	alpha/beta fold family hydrolase
1454	 66.67	0	1723868..1725109	-	413	83717207	-	BTH_II1460	-	TrkA domain-containing protein
1455	 72.01	0	1725219..1726529	-	436	83717615	-	BTH_II1461	-	putative lipoprotein
1456	 67.49	0	1726780..1727634	+	284	83718126	-	BTH_II1462	-	hypothetical protein
1457	 69.86	0	1727767..1729647	+	626	83717608	-	BTH_II1463	-	hypothetical protein
1458	 70.07	0	1729774..1731330	-	518	83718188	-	BTH_II1464	-	methyl-accepting chemotaxis protein
1459	 69.77	0	1731576..1733090	+	504	83716888	-	BTH_II1465	-	EmrB/QacA family drug resistance transporter
1460	 62.17	-1	1733139..1734272	-	377	83717348	-	BTH_II1466	-	hypothetical protein
1461	 69.66	0	1734604..1735170	+	188	83717877	-	BTH_II1467	-	phosphinothricin N-acetyltransferase
1462	 67.72	0	1735198..1736055	+	285	83716270	-	BTH_II1468	-	MerR family transcriptional regulator
1463	 69.10	0	1736179..1737165	+	328	83716797	-	BTH_II1469	-	aliphatic compound ABC transporter, periplasmic substrate-binding protein
1464	 71.69	0	1737325..1737981	+	218	83716311	-	BTH_II1470	-	hypothetical protein
1465	 64.70	0	1738236..1739810	+	524	83718157	-	BTH_II1471	-	flavin-binding monooxygenase-like protein
1466	 68.25	0	1739838..1740785	+	315	83717660	-	BTH_II1472	-	short chain dehydrogenase
1467	 64.04	0	1740782..1741696	+	304	83717175	-	BTH_II1473	-	hypothetical protein
1468	 69.72	0	1741708..1742658	+	316	83716603	-	BTH_II1474	-	alpha/beta fold family hydrolase
1469	 67.59	0	1742923..1743900	-	325	83716147	-	BTH_II1475	-	LysR family transcriptional regulator
1470	 71.47	0	1743971..1745449	+	492	83717982	-	BTH_II1476	-	6-aminohexanoate-cyclic-dimer hydrolase
1471	 68.75	0	1745482..1746393	-	303	83716044	-	BTH_II1477	-	pyridine nucleotide-disulphide oxidoreductase, class II
1472	 63.39	0	1746465..1746983	+	172	83717641	-	BTH_II1478	-	transcriptional regulator family protein
1473	 66.49	0	1747102..1747659	-	185	83716135	-	BTH_II1479	-	hypothetical protein
1474	 75.83	+1	1747678..1747797	-	39	83716487	-	BTH_II1480	-	hypothetical protein
1475	 66.45	0	1747908..1748810	-	300	83716923	-	BTH_II1481	-	N-hydroxyarylamine O-acetyltransferase
1476	 68.61	0	1748895..1749614	-	239	83716103	-	BTH_II1482	-	hypothetical protein
1477	 57.78	-2	1750073..1750297	+	74	83718222	-	BTH_II1483	-	hypothetical protein
1478	 65.51	0	1750489..1751790	-	433	83717577	-	BTH_II1484	-	methionine gamma-lyase
1479	 62.08	-1	1751978..1752457	+	159	83717717	-	BTH_II1485	-	AsnC family transcriptional regulator
1480	 68.27	0	1752559..1754052	-	497	83717071	-	BTH_II1486	-	amidase
1481	 62.55	-1	1754464..1754997	+	177	83717852	-	BTH_II1487	-	UspA family protein
1482	 66.22	0	1755173..1756069	-	298	83717436	-	BTH_II1488	-	OmpA/SmpA/OmlA family outer membrane lipoprotein
1483	 69.55	0	1756063..1758558	-	831	83717995	-	BTH_II1489	-	Hep_Hag family protein
1484	 67.66	0	1759091..1760497	-	468	83717396	-	BTH_II1490	-	major facilitator family transporter
1485	 70.35	0	1760532..1761779	-	415	83717164	-	BTH_II1491	-	pyridine nucleotide-disulfide oxidoreductase, class I
1486	 68.01	0	1761772..1762737	-	321	83716179	-	BTH_II1492	-	glyoxalase family protein
1487	 70.35	0	1762754..1764220	-	488	83718216	-	BTH_II1493	-	aldehyde dehydrogenase family protein
1488	 72.18	+1	1764266..1765081	-	271	83717707	-	BTH_II1494	-	L-aspartate dehydrogenase
1489	 69.71	0	1765074..1766747	-	557	83717500	-	BTH_II1495	-	hypothetical protein
1490	 69.35	0	1766740..1767522	-	260	83716386	-	BTH_II1496	-	short chain dehydrogenase
1491	 67.95	0	1767534..1768388	-	284	83717760	-	BTH_II1497	-	IclR family transcriptional regulator
1492	 73.07	+1	1768385..1769290	-	301	83718359	-	BTH_II1498	-	alpha/beta fold family hydrolase
1493	 65.15	0	1769307..1769834	-	175	83717281	-	BTH_II1499	-	hypothetical protein
1494	 72.37	+1	1769873..1770643	-	256	83716773	-	BTH_II1500	-	short chain dehydrogenase
1495	 67.70	0	1770640..1771707	-	355	83716647	-	BTH_II1501	-	Rieske family iron-sulfur cluster-binding protein
1496	 68.27	0	1771742..1772053	-	103	83716263	-	BTH_II1502	-	hypothetical protein
1497	 63.52	0	1772055..1772372	-	105	83718023	-	BTH_II1503	-	naphthalene 1,2-dioxygenase system ferredoxin component
1498	 62.44	-1	1772405..1773895	+	496	83717059	-	BTH_II1504	-	outer membrane porin OpcP
1499	 69.72	0	1774200..1775150	-	316	83717060	-	BTH_II1505	-	IclR family transcriptional regulator
1500	 70.39	0	1775229..1775846	-	205	83716390	-	BTH_II1506	-	2OG-Fe(II) oxygenase family oxidoreductase
1501	 66.01	0	1775962..1776570	+	202	83718306	-	BTH_II1507	-	hypothetical protein
1502	 72.36	+1	1776630..1777841	+	403	83716582	-	BTH_II1508	-	Ser/Thr protein phosphatase family protein
1503	 65.97	0	1778325..1779041	+	238	83717315	-	BTH_II1509	-	MgtC family protein
1504	 63.47	0	1779070..1779789	-	239	83716915	-	BTH_II1510	-	ATP-dependent transcription regulator LuxR
1505	 68.69	0	1779863..1780306	+	147	83718133	-	BTH_II1511	-	hypothetical protein
1506	 66.83	0	1780524..1781135	+	203	83717635	-	BTH_II1512	-	N-acyl homoserine lactone synthase
1507	 70.60	0	1781224..1782036	+	270	83717077	-	BTH_II1513	-	hypothetical protein
1508	 63.96	0	1781999..1782664	-	221	83717631	ribA	BTH_II1514	-	GTP cyclohydrolase II
1509	 58.66	-2	1782829..1783290	+	153	83716568	-	BTH_II1515	-	CBS domain-containing protein
1510	 65.20	0	1783502..1783843	-	113	83717975	-	BTH_II1516	-	hypothetical protein
1511	 58.90	-1	1784385..1784783	+	132	83716392	-	BTH_II1517	-	nucleoside diphosphate kinase regulator, putative
1512	 55.88	-2	1784903..1785310	+	135	83716114	-	BTH_II1518	-	transposase, putative
1513	 58.53	-2	1785280..1785660	+	126	83718098	-	BTH_II1519	-	IS4 family transposase
1514	 62.67	-1	1785834..1786958	-	374	83718334	-	BTH_II1520	-	outer membrane porin OpcP
1515	 73.04	+1	1787543..1787950	+	135	83716334	-	BTH_II1521	-	Tat pathway signal sequence domain-containing protein
1516	 63.65	0	1788064..1788561	+	165	83716707	-	BTH_II1522	-	ArsR family transcriptional regulator
1517	 69.30	0	1788611..1789672	+	353	83717694	-	BTH_II1523	-	N-ethylmaleimide reductase
1518	 67.82	0	1789793..1790398	-	201	83718088	-	BTH_II1524	-	acetyltransferase
1519	 66.09	0	1790275..1790796	+	173	83717903	-	BTH_II1525	-	transporter, putative
1520	 59.37	-1	1791422..1792120	-	232	83717495	-	BTH_II1527	-	hypothetical protein
1521	 60.99	-1	1792173..1793441	-	422	83716088	-	BTH_II1528	-	transposase mutator family protein
1522	 56.74	-2	1793465..1794391	-	308	83716987	-	BTH_II1529	-	hypothetical protein
1523	 59.86	-1	1794417..1795811	-	464	83716458	-	BTH_II1530	-	hypothetical protein
1524	 67.52	0	1795811..1798153	-	780	83716374	-	BTH_II1531	-	Rhs element Vgr protein, putative
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.