IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
93	 56.51	-2	104684..104998	-	104	83717557	-	BTH_II0093	-	integrase, putative
94	 58.82	-1	104962..105687	+	241	83718341	-	BTH_II0094	-	hypothetical protein
95	 62.84	-1	105871..106236	+	121	83717732	-	BTH_II0095	-	transposase
96	 62.50	-1	106194..107081	+	295	83716991	-	BTH_II0096	-	transposase
97	 60.03	-1	107167..108702	+	511	83717375	-	BTH_II0097	-	hypothetical protein
98	 67.80	0	108712..108975	+	87	83717867	-	BTH_II0098	-	PAAR motif-containing protein
99	 65.24	0	109390..109809	-	139	83716293	-	BTH_II0099	-	hypothetical protein
100	 66.97	0	109829..110155	-	108	83716191	trx	BTH_II0100	-	thioredoxin
101	 67.68	0	110628..111320	+	230	83716565	-	BTH_II0101	-	putative lipoprotein
102	 69.19	0	112130..112486	-	118	83717520	-	BTH_II0102	-	hypothetical protein
103	 65.37	0	112964..114199	-	411	83717969	-	BTH_II0103	-	outer membrane porin OpcP
104	 65.40	0	114738..115682	-	314	83716532	-	BTH_II0104	-	LysR family transcriptional regulator
105	 67.90	0	116223..116546	-	107	83718096	-	BTH_II0105	-	hypothetical protein
106	 67.39	0	117174..117449	-	91	83717555	-	BTH_II0106	-	hypothetical protein
107	 64.66	0	117552..118499	-	315	161723120	-	BTH_II0107	-	DNA-binding transcriptional regulator CynR
108	 72.59	+1	118751..120184	-	477	83716676	-	BTH_II0108	-	outer membrane efflux protein
109	 69.67	0	120178..121077	-	299	83718248	-	BTH_II0109	-	FusE-MFP/HlyD family membrane protein
110	 68.67	0	121300..123549	-	749	83717755	-	BTH_II0110	-	fusaric acid resistance protein, putative
111	 62.90	-1	124376..125890	-	504	83717439	-	BTH_II0111	-	hypothetical protein
112	 68.72	0	127466..129949	+	827	83717045	-	BTH_II0112	-	Hep_Hag family protein
113	 62.50	-1	130025..131512	-	495	83716039	-	BTH_II0113	-	PqaA
114	 63.78	0	131727..132176	-	149	83717069	-	BTH_II0114	-	YfaZ precursor superfamily protein
115	 57.12	-2	132907..133461	+	184	83717319	-	BTH_II0115	-	frimbrial protein
116	 60.61	-1	133543..134268	+	241	83717851	-	BTH_II0116	-	fimbrial chaperone protein ecpD
117	 64.22	0	134305..137124	+	939	83716782	-	BTH_II0117	-	outer membrane usher protein
118	 63.00	-1	137144..137689	+	181	83716399	-	BTH_II0118	-	major fimbrial subunit protein
119	 60.43	-1	137720..138409	+	229	83717840	-	BTH_II0119	-	hypothetical protein
120	 63.21	0	138412..140088	+	558	83717470	-	BTH_II0120	-	hypothetical protein
121	 58.33	-2	140432..140971	+	179	83716514	-	BTH_II0121	-	hypothetical protein
122	 60.60	-1	141005..142504	+	499	83716153	-	BTH_II0122	-	hypothetical protein
123	 60.46	-1	142705..143187	+	160	83717589	-	BTH_II0123	-	hypothetical protein
124	 61.69	-1	143315..143857	+	180	83717629	-	BTH_II0124	-	putative lipoprotein
125	 61.47	-1	143770..145212	+	480	83717986	-	BTH_II0125	-	hypothetical protein
126	 65.51	0	145209..146510	+	433	83716132	-	BTH_II0126	-	hypothetical protein
127	 66.26	0	146525..150433	+	1302	83716562	-	BTH_II0127	-	putative lipoprotein
128	 66.67	0	150603..151172	+	189	83717749	-	BTH_II0128	-	hypothetical protein
129	 64.83	0	151273..153891	+	872	83718246	-	BTH_II0129	-	Rhs element Vgr protein
130	 63.70	0	153966..154235	+	89	83716387	-	BTH_II0130	-	Rhs family protein
131	 60.96	-1	154248..157700	+	1150	83716726	-	BTH_II0131	-	Rhs1 protein
132	 57.70	-2	157593..158975	-	460	83716926	-	BTH_II0132	-	hypothetical protein
133	 57.05	-2	158984..160117	-	377	83717748	-	BTH_II0133	-	fimbrial protein subfamily protein
134	 66.39	0	160068..161138	-	356	83716195	-	BTH_II0134	-	ImpA-like N-terminal family protein
135	 66.29	0	161157..162206	-	349	83716825	-	BTH_II0135	-	putative cytoplasmic protein
136	 63.21	0	162203..164083	-	626	83718132	-	BTH_II0136	-	hypothetical protein
137	 62.43	-1	164085..164603	-	172	83718123	-	BTH_II0137	-	hypothetical protein
138	 64.21	0	164590..165444	-	284	83716566	-	BTH_II0138	-	ImpE protein superfamily protein
139	 64.02	0	165428..166483	-	351	83717118	-	BTH_II0139	-	hypothetical protein
140	 65.22	0	166857..169613	+	918	83717355	-	BTH_II0140	-	ClpA/B type protease
141	 62.68	-1	170006..172864	-	952	83717305	-	BTH_II0141	-	two-component system sensor protein
142	 54.60	-2	174659..175321	-	220	83717848	-	BTH_II0142	-	DNA-binding response regulator
143	 61.40	-1	176147..176944	+	265	83717007	-	BTH_II0143	-	transcription regulator
144	 65.66	0	177029..179521	-	830	83718073	-	BTH_II0144	-	sensor protein evgS precursor
145	 63.93	0	179572..181395	+	607	83716112	-	BTH_II0145	-	glycosyl transferase group 2 family protein
146	 60.47	-1	181392..182327	+	311	83716750	-	BTH_II0146	-	hypothetical protein
147	 60.58	-1	182320..183108	+	262	83717240	-	BTH_II0147	-	hypothetical protein
148	 57.80	-2	183105..183713	+	202	83718026	-	BTH_II0148	-	HAD family hydrolase
149	 58.94	-1	183689..184348	+	219	83716512	-	BTH_II0149	-	hypothetical protein
150	 60.26	-1	184329..185483	+	384	83716668	-	BTH_II0150	-	hypothetical protein
151	 63.86	0	185596..186486	+	296	83717540	-	BTH_II0151	-	flagellin D
152	 71.19	0	186543..186719	-	58	83718295	-	BTH_II0152	-	hypothetical protein
153	 62.09	-1	186899..187750	+	283	83717992	-	BTH_II0153	-	flagellar motor protein MotA
154	 67.95	0	187769..188704	+	311	83717140	-	BTH_II0154	-	chemotaxis lafU protein
155	 61.71	-1	188721..189083	+	120	83717918	-	BTH_II0155	-	chemotaxis response regulator
156	 66.76	0	189128..191371	+	747	83716091	-	BTH_II0156	-	chemotaxis protein CheA
157	 63.92	0	191381..191854	+	157	83717542	-	BTH_II0157	-	chemotaxis protein CheW
158	 66.41	0	191935..194274	+	779	83717148	-	BTH_II0158	-	chemotaxis protein
159	 63.63	0	194385..195206	+	273	83716910	-	BTH_II0159	-	chemotaxis protein methyltransferase CheR
160	 66.67	0	195211..195798	+	195	83716255	-	BTH_II0160	-	chemotaxis protein CheD
161	 69.78	0	195743..196930	+	395	83717224	-	BTH_II0161	-	protein-glutamate methylesterase CheB
162	 65.65	0	196955..198037	+	360	83716866	-	BTH_II0162	-	protein-glutamate methylesterase CheB
163	 66.43	0	198126..200216	-	696	83716612	-	BTH_II0163	-	flagellar biosynthesis protein FlhA
164	 67.02	0	200213..201352	-	379	83716504	flhB	BTH_II0164	-	flagellar biosynthesis protein FlhB
165	 66.54	0	201345..202121	-	258	83718195	-	BTH_II0165	-	flagellar biosynthetic protein FliR, putative
166	 65.93	0	202126..202398	-	90	83717562	-	BTH_II0166	-	flagellar biosynthetic protein FliQ, putative
167	 66.15	0	202398..203165	-	255	83716894	fliP	BTH_II0167	-	flagellar biosynthesis protein FliP
168	 63.79	0	203162..203509	-	115	83716202	-	BTH_II0168	-	flagellar motor switch protein FliN
169	 70.73	0	203513..204472	-	319	83717892	-	BTH_II0169	-	hypothetical protein
170	 64.26	0	205230..205562	+	110	83716521	fliE-2	BTH_II0170	-	flagellar hook-basal body complex protein FliE
171	 68.06	0	205598..207253	+	551	83718135	fliF	BTH_II0171	-	flagellar MS-ring protein
172	 65.98	0	207234..208247	+	337	83717505	fliG	BTH_II0172	-	flagellar motor switch protein G
173	 69.28	0	208244..208969	+	241	83717320	fliH	BTH_II0173	-	flagellar assembly protein H
174	 70.03	0	208966..210273	+	435	83716747	fliI	BTH_II0174	-	flagellum-specific ATP synthase
175	 73.29	+1	210270..210707	+	145	83716277	-	BTH_II0175	-	hypothetical protein
176	 61.96	-1	210784..212100	+	438	83717962	-	BTH_II0176	-	flagellar hook-associated protein, putative
177	 64.08	0	212134..212520	+	128	83718213	fliS-2	BTH_II0177	-	flagellar protein FliS
178	 72.42	+1	212507..212836	+	109	83717532	-	BTH_II0178	-	hypothetical protein
179	 72.34	+1	212833..213978	+	381	83717155	-	BTH_II0179	-	flagellar hook-length control protein, putative
180	 64.77	0	214074..215183	+	369	83716542	-	BTH_II0180	-	RNA polymerase sigma factor for flagellar operon FliA
181	 68.42	0	215232..215516	+	94	83717908	-	BTH_II0181	-	hypothetical protein
182	 72.08	+1	215925..216719	+	264	83717866	-	BTH_II0182	-	flagellar protein FlgJ
183	 70.80	0	216661..217434	-	257	83717277	-	BTH_II0183	-	flagella basal body P-ring formation protein FlgA
184	 63.73	0	217553..217927	+	124	83716884	flgB-2	BTH_II0184	-	flagellar basal-body rod protein FlgB
185	 64.75	0	217964..218380	+	138	83716764	flgC-2	BTH_II0185	-	flagellar basal-body rod protein FlgC
186	 63.79	0	218407..219102	+	231	83716169	flgD	BTH_II0186	-	flagellar basal body rod modification protein
187	 66.08	0	219099..220286	+	395	83718065	flgE	BTH_II0187	-	flagellar hook protein flgE
188	 68.46	0	220290..221015	+	241	83717394	-	BTH_II0188	-	flagellar basal-body rod protein FlgF
189	 63.24	0	221047..221835	+	262	83716996	flgG	BTH_II0189	-	flagellar basal body rod protein FlgG
190	 65.75	0	221835..222488	+	217	83716377	flgH	BTH_II0190	-	flagellar basal body L-ring protein
191	 68.13	0	222488..223651	+	387	83718393	flgI	BTH_II0191	-	flagellar basal body P-ring protein
192	 72.95	+1	223665..224030	+	121	83717917	-	BTH_II0192	-	peptidoglycan hydrolase
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.