IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1357	 63.66	0	1608174..1609967	-	597	83717715	-	BTH_II1363	-	bacteriophage replication protein
1358	 63.18	0	1609967..1611574	-	535	83718377	-	BTH_II1364	-	DNA methyltransferase
1359	 62.57	-1	1611391..1612512	-	373	83718172	-	BTH_II1365	-	gp51
1360	 60.36	-1	1612868..1613089	-	73	83716406	-	BTH_II1366	-	hypothetical protein
1361	 59.17	-1	1613405..1614178	-	257	83717996	-	BTH_II1367	-	hypothetical protein
1362	 58.11	-2	1614568..1614906	+	112	83718205	-	BTH_II1368	-	hypothetical protein
1363	 62.35	-1	1615044..1615529	-	161	83716348	-	BTH_II1369	-	YbaK/prolyl-tRNA synthetase associated domain-containing protein
1364	 66.04	0	1615759..1615917	-	52	83717146	-	BTH_II1370	-	cystathionine beta-synthase
1365	 63.60	0	1616174..1616662	+	162	83717330	-	BTH_II1371	-	hypothetical protein
1366	 63.75	0	1617014..1617253	+	79	83716939	-	BTH_II1372	-	hypothetical protein
1367	 72.30	+1	1618195..1619526	+	443	83717845	-	BTH_II1373	-	heavy metal resistance protein CzcC
1368	 71.27	0	1619537..1620991	+	484	83717838	-	BTH_II1374	-	heavy metal resistance protein CzcB
1369	 68.71	0	1621057..1624290	+	1077	83718363	-	BTH_II1375	-	heavy metal efflux pump CzcA
1370	 66.81	0	1624297..1624986	+	229	83717734	-	BTH_II1376	-	DNA-binding response regulator IrlR
1371	 68.10	0	1624983..1626377	+	464	83717082	-	BTH_II1377	-	sensor protein irlS
1372	 67.03	0	1626469..1626741	-	90	83716229	-	BTH_II1378	-	hypothetical protein
1373	 70.08	0	1628184..1629443	+	419	83718148	-	BTH_II1379	-	acyl-CoA dehydrogenase family protein
1374	 66.25	0	1629555..1630271	-	238	83717280	-	BTH_II1380	-	hypothetical protein
1375	 69.31	0	1630820..1633048	-	742	83717123	-	BTH_II1381	-	TonB-dependent siderophore receptor
1376	 77.01	+2	1633527..1634531	-	334	83716620	-	BTH_II1382	-	FecR family protein
1377	 70.78	0	1634528..1635037	-	169	83717850	-	BTH_II1383	-	ECF subfamily RNA polymerase sigma factor
1378	 71.94	0	1635222..1635581	-	119	83717343	-	BTH_II1384	-	hypothetical protein
1379	 74.04	+1	1635621..1636352	-	243	83716735	-	BTH_II1385	-	YceI like family protein
1380	 77.00	+2	1636480..1637292	-	270	83716066	-	BTH_II1386	-	hypothetical protein
1381	 71.07	0	1637289..1637810	-	173	83716762	-	BTH_II1387	-	ECF subfamily RNA polymerase sigma factor
1382	 71.71	0	1638580..1639590	+	336	83716095	-	BTH_II1388	-	AraC family transcriptional regulator
1383	 72.20	+1	1639754..1640458	+	234	83718339	-	BTH_II1389	-	fumarylacetoacetate hydrolase family protein
1384	 71.83	0	1640493..1641731	+	412	83717681	-	BTH_II1390	-	CAAX protease family protein
1385	 66.81	0	1641999..1642715	-	238	83717057	-	BTH_II1391	-	hypothetical protein
1386	 70.14	0	1642762..1644087	-	441	83716346	paaF-2	BTH_II1392	-	phenylacetate-CoA ligase
1387	 69.98	0	1644299..1645444	+	381	83716371	-	BTH_II1393	-	calcium/proton exchanger
1388	 67.98	0	1645559..1646851	-	430	83716945	-	BTH_II1394	-	LysR family transcriptional regulator
1389	 73.06	+1	1646801..1648051	+	416	83716476	-	BTH_II1395	-	HPP family protein
1390	 64.18	0	1648114..1648596	+	160	83716995	-	BTH_II1396	-	hypothetical protein
1391	 71.24	0	1648630..1650486	+	618	83717802	-	BTH_II1397	-	voltage-gated chloride channel/CBS domain-containing protein
1392	 73.32	+1	1650658..1652430	+	590	83718318	-	BTH_II1398	-	hypothetical protein
1393	 68.47	0	1652591..1653475	+	294	83716162	-	BTH_II1399	-	methyltransferase FkbM family protein
1394	 68.03	0	1653568..1654299	-	243	83716686	-	BTH_II1400	-	response regulator
1395	 69.90	0	1654301..1655383	-	360	83717487	-	BTH_II1401	-	histidine kinase
1396	 60.49	-1	1655622..1655783	+	53	83717661	-	BTH_II1402	-	putative transposase
1397	 72.93	+1	1655843..1656289	-	148	83717931	-	BTH_II1403	-	transporter, putative
1398	 69.01	0	1657350..1657691	+	113	83717286	-	BTH_II1404	-	hypothetical protein
1399	 70.21	0	1657815..1658096	-	93	83716793	-	BTH_II1405	-	hypothetical protein
1400	 66.87	0	1658077..1658571	-	164	83716428	-	BTH_II1406	-	hypothetical protein
1401	 68.28	0	1658816..1660117	+	433	83717724	-	BTH_II1407	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase, putative
1402	 65.23	0	1660176..1660943	-	255	83717199	-	BTH_II1408	-	histidine ABC transporter, ATP-binding protein
1403	 63.73	0	1661008..1661721	-	237	83717832	-	BTH_II1409	-	histidine ABC transporter, permease protein
1404	 64.35	0	1661718..1662407	-	229	83717299	-	BTH_II1410	-	histidine ABC transporter, permease protein
1405	 63.84	0	1662506..1663672	+	388	83717356	-	BTH_II1411	-	hypothetical protein
1406	 66.58	0	1663877..1664992	-	371	83716840	-	BTH_II1412	-	porin
1407	 64.30	0	1665045..1665593	-	182	83716320	-	BTH_II1413	-	DoxD-like family protein
1408	 68.97	0	1665652..1667130	-	492	83718163	-	BTH_II1414	-	cytochrome c family protein
1409	 65.68	0	1666995..1668608	-	537	83716938	-	BTH_II1415	-	hypothetical protein
1410	 67.05	0	1668608..1669123	-	171	83716424	-	BTH_II1416	-	oxidoreductase, putative
1411	 70.05	0	1670588..1672270	+	560	83717882	-	BTH_II1417	-	serine metalloprotease MrpA
1412	 66.85	0	1673005..1675794	+	929	83716685	mgtA	BTH_II1418	-	magnesium-translocating P-type ATPase
1413	 69.20	0	1675707..1676615	+	302	83716223	-	BTH_II1419	-	hypothetical protein
1414	 74.21	+1	1676741..1677151	-	136	83718113	-	BTH_II1420	-	hypothetical protein
1415	 68.42	0	1677162..1678760	-	532	83717588	-	BTH_II1421	-	GntR family transcriptional regulator
1416	 68.83	0	1678678..1681083	+	801	83716158	-	BTH_II1422	-	oxidoreductase alpha (molybdopterin) subunit
1417	 69.20	0	1681096..1682004	+	302	83716656	-	BTH_II1423	-	hypothetical protein
1418	 66.01	0	1682001..1682303	+	100	83717798	-	BTH_II1424	-	hypothetical protein
1419	 69.78	0	1682463..1683812	-	449	83718280	-	BTH_II1425	-	manganese/iron transporter
1420	 66.91	0	1683885..1685141	-	418	83717411	-	BTH_II1426	-	cupin family protein
1421	 65.86	0	1685435..1687036	+	533	83716425	-	BTH_II1427	-	solute-binding family 5 protein
1422	 67.82	0	1687128..1687733	-	201	83716150	-	BTH_II1428	-	hypothetical protein
1423	 71.26	0	1687850..1691242	-	1130	83716639	-	BTH_II1429	-	serine protease
1424	 55.22	-2	1691619..1691819	-	66	83718350	-	BTH_II1430	-	hypothetical protein
1425	 55.13	-2	1692617..1692772	+	51	83716508	-	BTH_II1431	-	hypothetical protein
1426	 59.11	-1	1692872..1693096	+	74	83716671	-	BTH_II1432	-	hypothetical protein
1427	 54.88	-2	1693408..1694001	-	197	83716166	-	BTH_II1433	-	hypothetical protein
1428	 65.98	0	1694011..1698672	-	1553	83717122	-	BTH_II1434	-	YD repeat-containing protein
1429	 65.71	0	1698724..1699245	-	173	83716060	-	BTH_II1435	-	hypothetical protein
1430	 63.04	-1	1699271..1701256	-	661	83718180	-	BTH_II1436	-	Rhs element Vgr protein
1431	 69.53	0	1701485..1702774	+	429	83717023	-	BTH_II1437	-	hypothetical protein
1432	 75.46	+1	1702717..1702932	-	71	83717728	-	BTH_II1438	-	hypothetical protein
1433	 72.33	+1	1703024..1703182	+	52	83716353	-	BTH_II1439	-	hypothetical protein
1434	 68.69	0	1703484..1704374	+	296	83716267	-	BTH_II1440	-	hypothetical protein
1435	 71.23	0	1704395..1704964	+	189	83718107	-	BTH_II1441	-	D-alanyl-D-alanine dipeptidase
1436	 65.60	0	1704997..1706688	+	563	83718344	-	BTH_II1442	-	ABC transporter, periplasmic substrate-binding protein
1437	 68.08	0	1706787..1707779	+	330	83716523	-	BTH_II1443	-	ABC transporter, permease protein
1438	 71.66	0	1707822..1708763	+	313	83716171	-	BTH_II1444	-	ABC transporter, permease protein
1439	 72.22	+1	1708765..1709646	+	293	83716673	-	BTH_II1445	-	ABC transporter, ATP-binding protein
1440	 70.70	0	1709643..1710410	+	255	83716116	-	BTH_II1446	-	ABC transporter system, ATP-binding protein
1441	 67.82	0	1710685..1710945	+	86	83717419	-	BTH_II1447	-	LysR family transcriptional regulator
1442	 68.75	0	1711246..1711581	+	111	83718081	-	BTH_II1448	-	hypothetical protein
1443	 67.21	0	1711722..1712639	-	305	83716338	-	BTH_II1449	-	LysR family transcriptional regulator
1444	 69.56	0	1713084..1714052	-	322	83717141	-	BTH_II1450	-	class A beta-lactamase precursor
1445	 70.48	0	1714197..1715351	-	384	83717584	-	BTH_II1451	-	lipoprotein NlpD, putative
1446	 59.39	-1	1715514..1715678	-	54	83717634	-	BTH_II1452	-	hypothetical protein
1447	 67.11	0	1715783..1716694	+	303	83718349	-	BTH_II1453	-	LysR family transcriptional regulator
1448	 64.42	0	1717177..1718421	-	414	83716488	-	BTH_II1454	-	outer membrane porin OpcP
1449	 68.60	0	1718614..1719909	+	431	83716709	-	BTH_II1455	-	opgC protein, putative
1450	 69.62	0	1719974..1720819	+	281	83718051	-	BTH_II1456	-	esterase, putative
1451	 73.87	+1	1720791..1721762	-	323	83717235	-	BTH_II1457	-	ornithine cyclodeaminase
1452	 69.17	0	1722118..1722516	-	132	83716243	-	BTH_II1458	-	4-carboxymuconolactone decarboxylase
1453	 71.04	0	1722926..1723816	+	296	83717657	-	BTH_II1459	-	alpha/beta fold family hydrolase
1454	 66.67	0	1723868..1725109	-	413	83717207	-	BTH_II1460	-	TrkA domain-containing protein
1455	 72.01	0	1725219..1726529	-	436	83717615	-	BTH_II1461	-	putative lipoprotein
1456	 67.49	0	1726780..1727634	+	284	83718126	-	BTH_II1462	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.