IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1299	 72.63	+1	1553572..1554543	+	323	83716670	-	BTH_II1305	-	phosphomethylpyrimidine kinase
1300	 69.53	0	1554621..1556051	+	476	83717260	-	BTH_II1306	-	thiaminase I precursor (thiamine pyridinylase)
1301	 68.51	0	1556132..1556782	-	216	83718091	-	BTH_II1307	-	hypothetical protein
1302	 69.71	0	1557422..1558276	+	284	83716253	-	BTH_II1308	-	hypothetical protein
1303	 74.46	+1	1558335..1560848	+	837	83717043	-	BTH_II1309	-	cation-transporting P-ATPase PacL
1304	 68.11	0	1560900..1561523	+	207	83717403	-	BTH_II1310	-	hypothetical protein
1305	 74.13	+1	1561679..1564291	-	870	83718050	-	BTH_II1311	-	Mg2+-importing ATPase, putative
1306	 71.48	0	1564355..1565725	-	456	83716557	-	BTH_II1312	-	hypothetical protein
1307	 71.67	0	1565877..1566296	+	139	83717620	-	BTH_II1313	-	hypothetical protein
1308	 70.22	0	1566310..1567743	+	477	83717086	-	BTH_II1314	-	hypothetical protein
1309	 65.90	0	1567801..1568061	+	86	83717293	-	BTH_II1315	-	hypothetical protein
1310	 73.48	+1	1568192..1568896	+	234	83717893	-	BTH_II1316	-	hypothetical protein
1311	 60.33	-1	1569028..1569327	+	99	83717979	-	BTH_II1317	-	hypothetical protein
1312	 69.93	0	1569436..1570569	+	377	83716410	-	BTH_II1318	-	polyglutamate synthase
1313	 73.46	+1	1570685..1573480	-	931	83717210	-	BTH_II1319	-	DnaK-related protein
1314	 71.92	0	1573484..1575331	-	615	83717736	-	BTH_II1320	-	putative DnaK-related protein (molecular chaperone)
1315	 68.85	0	1575328..1576107	-	259	83717340	-	BTH_II1321	-	hypothetical protein
1316	 72.03	+1	1576218..1576982	-	254	83716076	-	BTH_II1322	-	hydratase/decarboxylase family protein
1317	 67.44	0	1577569..1578084	+	171	83718109	-	BTH_II1323	-	ProP effector
1318	 59.09	-1	1578098..1578427	+	109	83716046	-	BTH_II1324	-	H-NS histone family protein
1319	 65.49	0	1579400..1580500	-	366	83717009	-	BTH_II1325	-	fels-2 prophage protein
1320	 68.08	0	1580500..1580925	-	141	83716759	gpU	BTH_II1326	-	Fels-2 prophage protein
1321	 67.14	0	1580943..1583903	-	986	83717435	-	BTH_II1327	-	phage-related tail transmembrane protein
1322	 64.04	0	1583906..1584019	-	37	83718076	-	BTH_II1328	-	phage tail protein P2
1323	 66.96	0	1584028..1584372	-	114	83718097	gpE	BTH_II1329	-	gpE+E'
1324	 59.41	-1	1584430..1584939	-	169	83716619	-	BTH_II1330	-	phage major tail tube protein
1325	 67.09	0	1584955..1586127	-	390	83716089	-	BTH_II1331	-	Phage tail sheath protein
1326	 73.51	+1	1586183..1586854	-	223	83717664	-	BTH_II1332	-	tail fiber assembly protein from lambdoid prophage e14
1327	 70.16	0	1586871..1589243	-	790	83718185	-	BTH_II1333	-	phage-related tail fiber protein
1328	 69.19	0	1589245..1589799	-	184	83717136	-	BTH_II1334	-	phage-related tail protein
1329	 67.88	0	1589792..1590697	-	301	83716415	-	BTH_II1335	-	baseplate J-like protein
1330	 67.51	0	1590694..1591047	-	117	83717272	-	BTH_II1336	-	hypothetical protein
1331	 68.43	0	1591053..1591733	-	226	83717952	-	BTH_II1337	-	hypothetical protein
1332	 66.67	0	1591907..1592683	+	258	83716835	-	BTH_II1338	-	site-specific DNA-methyltransferase
1333	 49.15	-2	1592849..1593379	-	176	83716211	-	BTH_II1339	-	hypothetical protein
1334	 70.09	0	1593506..1593973	-	155	83716314	-	BTH_II1340	-	phage virion morphogenesis protein
1335	 63.79	0	1593970..1594386	-	138	83716518	-	BTH_II1341	-	fels-2 prophage protein
1336	 70.29	0	1594491..1594931	-	146	83718328	-	BTH_II1342	-	protein lysB
1337	 68.26	0	1594928..1595680	-	250	83717816	-	BTH_II1343	-	hypothetical protein
1338	 68.13	0	1595737..1596009	-	90	83716711	-	BTH_II1344	-	hypothetical protein
1339	 68.99	0	1596011..1596355	-	114	83718041	-	BTH_II1345	-	hypothetical protein
1340	 67.63	0	1596370..1596576	-	68	83716985	-	BTH_II1346	-	Phage tail protein X
1341	 71.43	0	1596573..1596824	-	83	83717144	-	BTH_II1347	-	hypothetical protein
1342	 71.48	0	1596824..1597342	-	172	83716451	-	BTH_II1348	-	fels-2 prophage protein
1343	 71.30	0	1597403..1598092	-	229	83718154	-	BTH_II1349	-	Phage small terminase subunit
1344	 63.41	0	1598089..1599102	-	337	83716068	-	BTH_II1350	-	P2 family phage major capsid protein
1345	 66.42	0	1599136..1599945	-	269	83716727	-	BTH_II1351	-	Phage capsid scaffolding protein (GPO)
1346	 64.95	0	1600053..1601858	+	601	83717940	-	BTH_II1352	-	putative ATPase subunit of terminase (gpP-like)
1347	 66.19	0	1601855..1602910	+	351	83716197	-	BTH_II1353	-	PBSX family phage portal protein
1348	 57.88	-2	1603017..1603289	+	90	83716920	-	BTH_II1354	-	hypothetical protein
1349	 65.57	0	1603249..1603521	+	90	83716993	-	BTH_II1355	-	hypothetical protein
1350	 60.61	-1	1604079..1605200	-	373	83716613	-	BTH_II1356	-	gp31
1351	 60.43	-1	1605209..1605946	-	245	83716918	-	BTH_II1357	-	gp30
1352	 63.30	0	1605943..1606476	-	177	83716236	-	BTH_II1358	-	hypothetical protein
1353	 60.99	-1	1606579..1606860	-	93	83717781	-	BTH_II1359	-	hypothetical protein
1354	 66.51	0	1606935..1607588	-	217	83717536	-	BTH_II1360	-	ParA family protein, putative
1355	 66.67	0	1607689..1607895	-	68	83717616	-	BTH_II1361	-	putative bacteriophage transcriptional activator-related transcription regulator protein
1356	 67.05	0	1607892..1608149	-	85	83716655	-	BTH_II1362	-	bacteriophage-acquired protein
1357	 63.66	0	1608174..1609967	-	597	83717715	-	BTH_II1363	-	bacteriophage replication protein
1358	 63.18	0	1609967..1611574	-	535	83718377	-	BTH_II1364	-	DNA methyltransferase
1359	 62.57	-1	1611391..1612512	-	373	83718172	-	BTH_II1365	-	gp51
1360	 60.36	-1	1612868..1613089	-	73	83716406	-	BTH_II1366	-	hypothetical protein
1361	 59.17	-1	1613405..1614178	-	257	83717996	-	BTH_II1367	-	hypothetical protein
1362	 58.11	-2	1614568..1614906	+	112	83718205	-	BTH_II1368	-	hypothetical protein
1363	 62.35	-1	1615044..1615529	-	161	83716348	-	BTH_II1369	-	YbaK/prolyl-tRNA synthetase associated domain-containing protein
1364	 66.04	0	1615759..1615917	-	52	83717146	-	BTH_II1370	-	cystathionine beta-synthase
1365	 63.60	0	1616174..1616662	+	162	83717330	-	BTH_II1371	-	hypothetical protein
1366	 63.75	0	1617014..1617253	+	79	83716939	-	BTH_II1372	-	hypothetical protein
1367	 72.30	+1	1618195..1619526	+	443	83717845	-	BTH_II1373	-	heavy metal resistance protein CzcC
1368	 71.27	0	1619537..1620991	+	484	83717838	-	BTH_II1374	-	heavy metal resistance protein CzcB
1369	 68.71	0	1621057..1624290	+	1077	83718363	-	BTH_II1375	-	heavy metal efflux pump CzcA
1370	 66.81	0	1624297..1624986	+	229	83717734	-	BTH_II1376	-	DNA-binding response regulator IrlR
1371	 68.10	0	1624983..1626377	+	464	83717082	-	BTH_II1377	-	sensor protein irlS
1372	 67.03	0	1626469..1626741	-	90	83716229	-	BTH_II1378	-	hypothetical protein
1373	 70.08	0	1628184..1629443	+	419	83718148	-	BTH_II1379	-	acyl-CoA dehydrogenase family protein
1374	 66.25	0	1629555..1630271	-	238	83717280	-	BTH_II1380	-	hypothetical protein
1375	 69.31	0	1630820..1633048	-	742	83717123	-	BTH_II1381	-	TonB-dependent siderophore receptor
1376	 77.01	+2	1633527..1634531	-	334	83716620	-	BTH_II1382	-	FecR family protein
1377	 70.78	0	1634528..1635037	-	169	83717850	-	BTH_II1383	-	ECF subfamily RNA polymerase sigma factor
1378	 71.94	0	1635222..1635581	-	119	83717343	-	BTH_II1384	-	hypothetical protein
1379	 74.04	+1	1635621..1636352	-	243	83716735	-	BTH_II1385	-	YceI like family protein
1380	 77.00	+2	1636480..1637292	-	270	83716066	-	BTH_II1386	-	hypothetical protein
1381	 71.07	0	1637289..1637810	-	173	83716762	-	BTH_II1387	-	ECF subfamily RNA polymerase sigma factor
1382	 71.71	0	1638580..1639590	+	336	83716095	-	BTH_II1388	-	AraC family transcriptional regulator
1383	 72.20	+1	1639754..1640458	+	234	83718339	-	BTH_II1389	-	fumarylacetoacetate hydrolase family protein
1384	 71.83	0	1640493..1641731	+	412	83717681	-	BTH_II1390	-	CAAX protease family protein
1385	 66.81	0	1641999..1642715	-	238	83717057	-	BTH_II1391	-	hypothetical protein
1386	 70.14	0	1642762..1644087	-	441	83716346	paaF-2	BTH_II1392	-	phenylacetate-CoA ligase
1387	 69.98	0	1644299..1645444	+	381	83716371	-	BTH_II1393	-	calcium/proton exchanger
1388	 67.98	0	1645559..1646851	-	430	83716945	-	BTH_II1394	-	LysR family transcriptional regulator
1389	 73.06	+1	1646801..1648051	+	416	83716476	-	BTH_II1395	-	HPP family protein
1390	 64.18	0	1648114..1648596	+	160	83716995	-	BTH_II1396	-	hypothetical protein
1391	 71.24	0	1648630..1650486	+	618	83717802	-	BTH_II1397	-	voltage-gated chloride channel/CBS domain-containing protein
1392	 73.32	+1	1650658..1652430	+	590	83718318	-	BTH_II1398	-	hypothetical protein
1393	 68.47	0	1652591..1653475	+	294	83716162	-	BTH_II1399	-	methyltransferase FkbM family protein
1394	 68.03	0	1653568..1654299	-	243	83716686	-	BTH_II1400	-	response regulator
1395	 69.90	0	1654301..1655383	-	360	83717487	-	BTH_II1401	-	histidine kinase
1396	 60.49	-1	1655622..1655783	+	53	83717661	-	BTH_II1402	-	putative transposase
1397	 72.93	+1	1655843..1656289	-	148	83717931	-	BTH_II1403	-	transporter, putative
1398	 69.01	0	1657350..1657691	+	113	83717286	-	BTH_II1404	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.