IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1250	 64.98	0	1499504..1499740	-	78	83716818	-	BTH_II1256	-	thioredoxin
1251	 69.54	0	1499829..1500524	-	231	83716892	-	BTH_II1257	-	transferase
1252	 65.13	0	1500680..1500940	-	86	83717526	-	BTH_II1258	-	phosphocarrier protein HPr
1253	 69.48	0	1501002..1501499	-	165	83718220	-	BTH_II1259	-	hypothetical protein
1254	 68.48	0	1501981..1502754	-	257	83716505	-	BTH_II1260	-	hypothetical protein
1255	 69.21	0	1503131..1505137	+	668	83717182	-	BTH_II1261	-	hydrogenase 4 subunit B
1256	 68.87	0	1505131..1506081	+	316	83717934	-	BTH_II1262	-	formate hydrogenlyase subunit 4
1257	 63.33	0	1506082..1506741	+	219	83716144	-	BTH_II1263	-	hypothetical protein
1258	 67.17	0	1506803..1508194	+	463	83717864	-	BTH_II1264	-	hydrogenase 4 subunit F
1259	 72.02	+1	1508198..1509877	+	559	83717987	-	BTH_II1265	-	hydrogenase-3, subunit E
1260	 72.19	+1	1509877..1510401	+	174	83717494	-	BTH_II1266	-	formate hydrogenlyase subunit 7
1261	 66.67	0	1510787..1511203	+	138	83717229	-	BTH_II1267	-	hypothetical protein
1262	 68.88	0	1511650..1512597	-	315	83716891	-	BTH_II1268	-	universal stress protein
1263	 63.57	0	1512998..1513255	+	85	83717594	-	BTH_II1269	-	hypothetical protein
1264	 71.84	0	1513394..1514011	+	205	83717718	-	BTH_II1270	-	hypothetical protein
1265	 73.31	+1	1514117..1514899	-	260	83716959	-	BTH_II1271	-	hydroxyethylthiazole kinase family protein
1266	 67.56	0	1515171..1515728	-	185	83718210	-	BTH_II1272	-	transcriptional regulator
1267	 68.83	0	1515728..1517896	+	722	83716538	-	BTH_II1273	-	2,4-dienoyl-CoA reductase
1268	 66.67	0	1517991..1518431	+	146	83716899	-	BTH_II1274	-	hypothetical protein
1269	 62.70	-1	1518815..1519621	+	268	83717618	-	BTH_II1275	-	transcription regulator LuxR family protein
1270	 74.49	+1	1519861..1521240	-	459	83717391	-	BTH_II1276	-	hypothetical protein
1271	 70.65	0	1521298..1521900	-	200	83718083	-	BTH_II1277	-	hypothetical protein
1272	 73.01	+1	1521863..1523266	-	467	83716065	-	BTH_II1278	-	major facilitator superfamily protein superfamily
1273	 69.79	0	1523298..1524161	-	287	83717496	-	BTH_II1279	-	glyoxalase family protein family
1274	 67.14	0	1524164..1525216	-	350	83718199	-	BTH_II1280	-	O-methyltransferase family protein, putative
1275	 76.50	+2	1525276..1526445	-	389	83717489	ribD-2	BTH_II1281	-	riboflavin biosynthesis protein RibD
1276	 71.65	0	1526564..1527547	-	327	83718061	-	BTH_II1282	-	serine/threonine kinase
1277	 71.87	0	1527544..1528254	-	236	83716101	-	BTH_II1283	-	hypothetical protein
1278	 70.26	0	1528251..1529948	-	565	83716708	-	BTH_II1284	-	WD domain-containing protein
1279	 64.99	0	1529945..1530601	-	218	83717720	ribA	BTH_II1285	-	GTP cyclohydrolase II
1280	 71.38	0	1530903..1532534	-	543	83718331	-	BTH_II1286	-	RND efflux system outer membrane lipoprotein
1281	 68.66	0	1532549..1535659	-	1036	83717147	-	BTH_II1287	-	hydrophobe/amphiphile efflux family protein
1282	 72.59	+1	1535656..1536753	-	365	83716599	-	BTH_II1288	-	RND family efflux transporter MFP subunit
1283	 68.24	0	1536835..1537596	+	253	83717713	-	BTH_II1289	-	hypothetical protein
1284	 70.66	0	1537648..1539402	-	584	83716453	-	BTH_II1290	-	N-acyl-D-glutamate amidohydrolase
1285	 72.66	+1	1539483..1540916	+	477	83716645	-	BTH_II1291	-	HlyD family secretion protein
1286	 73.42	+1	1540913..1541860	+	315	83717518	-	BTH_II1292	-	ABC transporter, ATP binding/permease protein
1287	 74.17	+1	1541857..1542909	+	350	83718323	-	BTH_II1293	-	ABC transporter, ATP-binding protein
1288	 68.69	0	1542891..1544027	+	378	83716651	-	BTH_II1294	-	ABC transporter, ATP-binding protein
1289	 67.20	0	1544048..1545178	+	376	83716969	-	BTH_II1295	-	ABC transporter permease protein
1290	 72.13	+1	1545282..1545812	+	176	83717808	-	BTH_II1296	-	hypothetical protein
1291	 71.93	0	1546178..1546804	+	208	83717942	-	BTH_II1297	-	hypothetical protein
1292	 69.18	0	1546857..1548845	+	662	83717168	-	BTH_II1298	-	ATP-dependent metalloprotease FtsH
1293	 70.64	0	1548952..1549656	-	234	83716912	-	BTH_II1299	-	serine protease
1294	 73.10	+1	1549807..1550148	-	113	83716199	-	BTH_II1300	-	amino acid permease
1295	 70.73	0	1550851..1551342	+	163	83716576	-	BTH_II1301	-	MutT/nudix family protein
1296	 66.41	0	1551399..1551794	+	131	83717244	deoxy	BTH_II1302	-	putative cytidine deoxyribosyltransferase
1297	 68.38	0	1551796..1552785	+	329	83718309	-	BTH_II1303	-	deoxyuridylate hydroxymethyltransferase, putative
1298	 69.64	0	1552801..1553541	+	246	83716213	-	BTH_II1304	-	UbiE/COQ5 family methlytransferase
1299	 72.63	+1	1553572..1554543	+	323	83716670	-	BTH_II1305	-	phosphomethylpyrimidine kinase
1300	 69.53	0	1554621..1556051	+	476	83717260	-	BTH_II1306	-	thiaminase I precursor (thiamine pyridinylase)
1301	 68.51	0	1556132..1556782	-	216	83718091	-	BTH_II1307	-	hypothetical protein
1302	 69.71	0	1557422..1558276	+	284	83716253	-	BTH_II1308	-	hypothetical protein
1303	 74.46	+1	1558335..1560848	+	837	83717043	-	BTH_II1309	-	cation-transporting P-ATPase PacL
1304	 68.11	0	1560900..1561523	+	207	83717403	-	BTH_II1310	-	hypothetical protein
1305	 74.13	+1	1561679..1564291	-	870	83718050	-	BTH_II1311	-	Mg2+-importing ATPase, putative
1306	 71.48	0	1564355..1565725	-	456	83716557	-	BTH_II1312	-	hypothetical protein
1307	 71.67	0	1565877..1566296	+	139	83717620	-	BTH_II1313	-	hypothetical protein
1308	 70.22	0	1566310..1567743	+	477	83717086	-	BTH_II1314	-	hypothetical protein
1309	 65.90	0	1567801..1568061	+	86	83717293	-	BTH_II1315	-	hypothetical protein
1310	 73.48	+1	1568192..1568896	+	234	83717893	-	BTH_II1316	-	hypothetical protein
1311	 60.33	-1	1569028..1569327	+	99	83717979	-	BTH_II1317	-	hypothetical protein
1312	 69.93	0	1569436..1570569	+	377	83716410	-	BTH_II1318	-	polyglutamate synthase
1313	 73.46	+1	1570685..1573480	-	931	83717210	-	BTH_II1319	-	DnaK-related protein
1314	 71.92	0	1573484..1575331	-	615	83717736	-	BTH_II1320	-	putative DnaK-related protein (molecular chaperone)
1315	 68.85	0	1575328..1576107	-	259	83717340	-	BTH_II1321	-	hypothetical protein
1316	 72.03	+1	1576218..1576982	-	254	83716076	-	BTH_II1322	-	hydratase/decarboxylase family protein
1317	 67.44	0	1577569..1578084	+	171	83718109	-	BTH_II1323	-	ProP effector
1318	 59.09	-1	1578098..1578427	+	109	83716046	-	BTH_II1324	-	H-NS histone family protein
1319	 65.49	0	1579400..1580500	-	366	83717009	-	BTH_II1325	-	fels-2 prophage protein
1320	 68.08	0	1580500..1580925	-	141	83716759	gpU	BTH_II1326	-	Fels-2 prophage protein
1321	 67.14	0	1580943..1583903	-	986	83717435	-	BTH_II1327	-	phage-related tail transmembrane protein
1322	 64.04	0	1583906..1584019	-	37	83718076	-	BTH_II1328	-	phage tail protein P2
1323	 66.96	0	1584028..1584372	-	114	83718097	gpE	BTH_II1329	-	gpE+E'
1324	 59.41	-1	1584430..1584939	-	169	83716619	-	BTH_II1330	-	phage major tail tube protein
1325	 67.09	0	1584955..1586127	-	390	83716089	-	BTH_II1331	-	Phage tail sheath protein
1326	 73.51	+1	1586183..1586854	-	223	83717664	-	BTH_II1332	-	tail fiber assembly protein from lambdoid prophage e14
1327	 70.16	0	1586871..1589243	-	790	83718185	-	BTH_II1333	-	phage-related tail fiber protein
1328	 69.19	0	1589245..1589799	-	184	83717136	-	BTH_II1334	-	phage-related tail protein
1329	 67.88	0	1589792..1590697	-	301	83716415	-	BTH_II1335	-	baseplate J-like protein
1330	 67.51	0	1590694..1591047	-	117	83717272	-	BTH_II1336	-	hypothetical protein
1331	 68.43	0	1591053..1591733	-	226	83717952	-	BTH_II1337	-	hypothetical protein
1332	 66.67	0	1591907..1592683	+	258	83716835	-	BTH_II1338	-	site-specific DNA-methyltransferase
1333	 49.15	-2	1592849..1593379	-	176	83716211	-	BTH_II1339	-	hypothetical protein
1334	 70.09	0	1593506..1593973	-	155	83716314	-	BTH_II1340	-	phage virion morphogenesis protein
1335	 63.79	0	1593970..1594386	-	138	83716518	-	BTH_II1341	-	fels-2 prophage protein
1336	 70.29	0	1594491..1594931	-	146	83718328	-	BTH_II1342	-	protein lysB
1337	 68.26	0	1594928..1595680	-	250	83717816	-	BTH_II1343	-	hypothetical protein
1338	 68.13	0	1595737..1596009	-	90	83716711	-	BTH_II1344	-	hypothetical protein
1339	 68.99	0	1596011..1596355	-	114	83718041	-	BTH_II1345	-	hypothetical protein
1340	 67.63	0	1596370..1596576	-	68	83716985	-	BTH_II1346	-	Phage tail protein X
1341	 71.43	0	1596573..1596824	-	83	83717144	-	BTH_II1347	-	hypothetical protein
1342	 71.48	0	1596824..1597342	-	172	83716451	-	BTH_II1348	-	fels-2 prophage protein
1343	 71.30	0	1597403..1598092	-	229	83718154	-	BTH_II1349	-	Phage small terminase subunit
1344	 63.41	0	1598089..1599102	-	337	83716068	-	BTH_II1350	-	P2 family phage major capsid protein
1345	 66.42	0	1599136..1599945	-	269	83716727	-	BTH_II1351	-	Phage capsid scaffolding protein (GPO)
1346	 64.95	0	1600053..1601858	+	601	83717940	-	BTH_II1352	-	putative ATPase subunit of terminase (gpP-like)
1347	 66.19	0	1601855..1602910	+	351	83716197	-	BTH_II1353	-	PBSX family phage portal protein
1348	 57.88	-2	1603017..1603289	+	90	83716920	-	BTH_II1354	-	hypothetical protein
1349	 65.57	0	1603249..1603521	+	90	83716993	-	BTH_II1355	-	hypothetical protein
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.