IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1152	 68.54	0	1345975..1346667	+	230	83717323	-	BTH_II1157	-	aspartate racemase
1153	 72.68	+1	1346633..1347697	+	354	83717543	-	BTH_II1158	-	LysR family transcriptional regulator
1154	 71.87	0	1347884..1348690	-	268	83716279	-	BTH_II1159	-	ABC transporter, periplasmic substrate-binding protein, putative
1155	 70.63	0	1348754..1349989	-	411	83716322	-	BTH_II1160	-	alcohol dehydrogenase, zinc-containing
1156	 63.48	0	1350231..1351202	-	323	83716865	-	BTH_II1161	-	LysR family transcriptional regulator
1157	 69.70	0	1351373..1352692	+	439	83717239	-	BTH_II1162	-	major facilitator family transporter
1158	 72.36	+1	1352640..1354079	+	479	83718037	-	BTH_II1163	-	allantoate amidohydrolase
1159	 69.21	0	1354110..1355132	+	340	83716756	-	BTH_II1164	-	acetylpolyamine aminohydrolase
1160	 70.44	0	1355588..1358185	-	865	83717430	-	BTH_II1165	-	putative lipoprotein
1161	 72.69	+1	1358405..1359466	-	353	83716082	-	BTH_II1166	-	regulatory protein NasS, putative
1162	 71.02	0	1359484..1360080	-	198	83716484	-	BTH_II1167	-	response regulator NasT
1163	 75.11	+1	1360183..1361058	-	291	83717152	cobA-2	BTH_II1168	-	uroporphyrin-III C-methyltransferase
1164	 70.81	0	1361942..1363267	+	441	83717447	-	BTH_II1169	-	nitrate transporter, putative
1165	 69.73	0	1363174..1365882	+	902	83716272	nirB-2	BTH_II1170	-	nitrite reductase [NAD(P)H], large subunit
1166	 69.21	0	1365920..1366273	+	117	83716467	nirD	BTH_II1171	-	nitrite reductase [NAD(P)H], small subunit
1167	 71.38	0	1366315..1370598	+	1427	83716994	-	BTH_II1172	-	nitrate reductase
1168	 73.17	+1	1370919..1372379	-	486	83717819	xylB-2	BTH_II1173	-	xylulokinase
1169	 68.58	0	1372376..1373368	-	330	83716412	-	BTH_II1174	-	AraC family transcriptional regulator
1170	 72.71	+1	1373407..1374663	-	418	83717036	-	BTH_II1175	-	glycerol-3-phosphate ABC transporter, ATP-binding protein
1171	 70.05	0	1374667..1375701	-	344	83717413	-	BTH_II1176	-	zinc-binding dehydrogenase family oxidoreductase
1172	 68.48	0	1375723..1376547	-	274	83718027	-	BTH_II1177	-	ABC transporter permease
1173	 66.33	0	1376535..1377413	-	292	83716860	-	BTH_II1178	-	sugar ABC transporter, permease protein, putative
1174	 69.03	0	1377596..1378867	-	423	83717337	-	BTH_II1179	-	sugar ABC transporter, periplasmic sugar-binding protein, putative
1175	 68.58	0	1379582..1380052	+	156	83716796	-	BTH_II1180	-	hypothetical protein
1176	 71.16	0	1380281..1381414	-	377	83716595	-	BTH_II1181	-	transporter, putative
1177	 71.20	0	1381444..1382304	-	286	83717869	-	BTH_II1182	-	DeoR family transcriptional regulator
1178	 69.47	0	1382829..1384862	-	677	83717142	-	BTH_II1183	-	DedA family protein
1179	 68.14	0	1384906..1388025	-	1039	83716606	-	BTH_II1184	-	heavy metal efflux pump CzcA, putative
1180	 70.05	0	1388073..1389137	-	354	83716269	-	BTH_II1185	-	metal ion efflux membrane fusion protein family
1181	 71.35	0	1389134..1390669	-	511	83717666	-	BTH_II1186	-	divalent cation resistant determinant protein C, putative
1182	 68.04	0	1390709..1390999	-	96	83717468	-	BTH_II1187	-	hypothetical protein
1183	 66.51	0	1391092..1392408	-	438	83716927	-	BTH_II1188	-	sensor histidine kinase, putative
1184	 67.10	0	1392398..1393087	-	229	83717997	-	BTH_II1189	-	response regulator
1185	 69.47	0	1393623..1393979	-	118	83717777	-	BTH_II1191	-	hypothetical protein
1186	 68.26	0	1393993..1395996	-	667	83716145	-	BTH_II1192	-	hypothetical protein
1187	 65.68	0	1396081..1397403	-	440	83718302	-	BTH_II1193	-	FF domain-containing protein
1188	 70.33	0	1398017..1399762	+	581	83717578	-	BTH_II1194	-	potassium efflux system protein, putative
1189	 72.40	+1	1399820..1400587	-	255	83717250	-	BTH_II1195	-	short chain dehydrogenase
1190	 68.86	0	1400643..1401644	-	333	83716589	-	BTH_II1196	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
1191	 68.29	0	1401901..1403691	-	596	83716466	-	BTH_II1197	-	penicillin-binding protein
1192	 68.25	0	1404370..1405818	-	482	83716986	-	BTH_II1198	-	methyl-accepting chemotaxis protein
1193	 75.50	+1	1406823..1407422	-	199	83716477	-	BTH_II1199	-	hypothetical protein
1194	 65.97	0	1407888..1408463	+	191	83718297	-	BTH_II1200	-	isochorismatase family protein
1195	 68.27	0	1408657..1409340	-	227	83717759	-	BTH_II1201	-	putative hydroxylase
1196	 72.98	+1	1409337..1410080	-	247	83716774	-	BTH_II1202	-	hypothetical protein
1197	 67.01	0	1410085..1412403	-	772	83716122	-	BTH_II1203	-	outer membrane ferric siderophore receptor
1198	 67.98	0	1412765..1414060	-	431	83717964	pyrB-2	BTH_II1204	-	aspartate carbamoyltransferase
1199	 65.19	0	1414343..1414477	+	44	83717408	-	BTH_II1205	-	entericidin-related protein
1200	 72.33	+1	1414611..1415069	-	152	83717105	-	BTH_II1206	-	hypothetical protein
1201	 67.81	0	1415078..1415515	-	145	83716108	-	BTH_II1207	-	carboxymuconolactone decarboxylase family protein
1202	 72.29	+1	1415710..1417434	-	574	83716625	-	BTH_II1208	-	GntR family transcriptional regulator
1203	 57.95	-2	1417784..1418047	+	87	83718317	-	BTH_II1209	-	hypothetical protein
1204	 68.92	0	1418132..1418842	+	236	83717351	-	BTH_II1210	-	hypothetical protein
1205	 75.15	+1	1418843..1427977	+	3044	83716694	-	BTH_II1211	-	polyketide synthase
1206	 71.29	0	1428069..1429064	+	331	83716299	-	BTH_II1212	-	syringomycin biosynthesis enzyme, putative
1207	 75.32	+1	1429061..1433023	+	1320	83717770	-	BTH_II1213	-	peptide synthetase-like protein
1208	 74.12	+1	1433041..1437765	+	1574	83716965	-	BTH_II1214	-	peptide synthetase, putative
1209	 73.32	+1	1437762..1439054	+	430	83717336	-	BTH_II1215	-	hypothetical protein
1210	 73.24	+1	1439051..1440115	+	354	83716832	-	BTH_II1216	-	D-cysteine desulfhydrase, putative
1211	 72.78	+1	1440127..1441074	+	315	83716342	-	BTH_II1217	-	luciferase family protein
1212	 75.29	+1	1441071..1442891	+	606	83716713	-	BTH_II1218	-	AMP-binding domain-containing protein
1213	 70.33	0	1442888..1443160	+	90	83716480	-	BTH_II1219	-	phosphopantetheine attachment site domain-containing protein
1214	 70.17	0	1443189..1444073	-	294	83716962	-	BTH_II1220	-	IclR family transcriptional regulator
1215	 69.34	0	1443995..1445302	-	435	83717811	-	BTH_II1221	-	shikimate transporter
1216	 69.28	0	1445675..1446820	+	381	83716682	-	BTH_II1222	-	4-hydroxyphenylpyruvate dioxygenase
1217	 68.35	0	1446810..1447106	-	98	83718311	-	BTH_II1223	-	hypothetical protein
1218	 63.20	0	1447197..1448120	-	307	83717262	-	BTH_II1224	-	CmaB
1219	 61.79	-1	1448266..1448511	-	81	83717936	-	BTH_II1225	-	phosphopantetheine-containing protein
1220	 68.61	0	1448529..1450175	-	548	83716248	-	BTH_II1226	-	peptide synthetase, putative
1221	 64.25	0	1450117..1450737	-	206	83716178	-	BTH_II1227	-	N-acyl homoserine lactone synthase
1222	 63.24	0	1450821..1451228	-	135	83718077	-	BTH_II1228	-	hypothetical protein
1223	 68.53	0	1451868..1453100	+	410	83716610	-	BTH_II1229	-	sodium/hydrogen exchanger
1224	 65.03	0	1453151..1454008	+	285	83717113	-	BTH_II1230	-	hypothetical protein
1225	 62.41	-1	1454107..1454811	-	234	83716885	-	BTH_II1231	-	ATP-dependent transcription regulator LuxR
1226	 64.22	0	1455361..1457442	-	693	83717270	-	BTH_II1232	-	oligopeptidase A
1227	 68.28	0	1457826..1462166	+	1446	83716416	-	BTH_II1233	-	peptide synthetase, putative
1228	 69.68	0	1462174..1466748	+	1524	83716219	-	BTH_II1234	-	JamP
1229	 68.25	0	1466630..1470742	+	1370	83717138	-	BTH_II1235	-	JamP
1230	 68.50	0	1470782..1474216	+	1144	83716594	-	BTH_II1236	-	nonribosomal peptide synthetase, putative
1231	 71.62	0	1474257..1476596	+	779	83716265	-	BTH_II1237	-	thiotemplate mechanism natural product synthetase
1232	 66.79	0	1476609..1478201	+	530	83717186	-	BTH_II1238	-	polyketide synthase
1233	 69.39	0	1478206..1479051	+	281	83716331	-	BTH_II1239	-	acetyltransferase
1234	 70.70	0	1479032..1479874	+	280	83717574	-	BTH_II1240	-	thioesterase II
1235	 67.40	0	1479935..1481161	+	408	83718155	-	BTH_II1241	-	drug resistance transporter, Bcr/CflA family protein, putative
1236	 59.57	-1	1481424..1482269	-	281	83718273	-	BTH_II1242	-	TauD/TfdA family dioxygenase
1237	 66.84	0	1483043..1484761	+	572	83716391	-	BTH_II1243	-	putative ABC transporter ATP-binding protein
1238	 66.67	0	1485100..1485885	-	261	83716640	-	BTH_II1244	-	Crp/FNR family transcriptional regulator
1239	 67.64	0	1485898..1486308	-	136	83716963	-	BTH_II1245	-	DNA-binding response regulator,, putative
1240	 72.45	+1	1486278..1486796	-	172	83717516	-	BTH_II1246	-	hypothetical protein
1241	 66.36	0	1486855..1487502	-	215	83716364	-	BTH_II1247	-	LuxR family DNA-binding response regulator
1242	 70.45	0	1487499..1489562	-	687	83717025	-	BTH_II1248	-	sensory box histidine kinase/response regulator
1243	 68.08	0	1490195..1494019	+	1274	83717065	-	BTH_II1249	-	nitrate reductase, alpha subunit
1244	 65.36	0	1494016..1495545	+	509	83718035	narH-2	BTH_II1250	-	nitrate reductase, beta subunit
1245	 70.85	0	1495542..1496234	+	230	83716043	-	BTH_II1251	-	nitrate reductase, delta subunit
1246	 65.79	0	1496338..1497021	+	227	83716703	narI-2	BTH_II1252	-	respiratory nitrate reductase, gamma subunit
1247	 71.58	0	1497077..1497829	+	250	83717644	-	BTH_II1253	-	peptidylprolyl isomerase
1248	 68.31	0	1497854..1499128	+	424	83718294	-	BTH_II1254	-	nitrate/nitrite transporter
1249	 72.42	+1	1499134..1499463	-	109	83716537	-	BTH_II1255	-	hypothetical protein
1250	 64.98	0	1499504..1499740	-	78	83716818	-	BTH_II1256	-	thioredoxin
1251	 69.54	0	1499829..1500524	-	231	83716892	-	BTH_II1257	-	transferase
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.