IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1089	 71.85	0	1273010..1273858	-	282	83717524	-	BTH_II1094	-	hydrolase
1090	 70.18	0	1273952..1275259	-	435	83717034	-	BTH_II1095	-	major facilitator family transporter
1091	 67.39	0	1275309..1276142	-	277	83716787	-	BTH_II1096	-	GntR family transcriptional regulator
1092	 68.90	0	1276202..1277497	+	431	83716327	-	BTH_II1097	-	major facilitator family transporter
1093	 67.50	0	1277751..1278473	+	240	83717894	-	BTH_II1098	-	HAD superfamily hydrolase
1094	 68.15	0	1278932..1280350	-	472	83717296	-	BTH_II1099	-	hypothetical protein
1095	 66.08	0	1280686..1281195	-	169	83717061	-	BTH_II1100	-	leucine-responsive regulatory protein, putative
1096	 67.35	0	1281388..1282404	+	338	83716411	-	BTH_II1101	-	1-aminocyclopropane-1-carboxylate deaminase
1097	 79.82	+2	1282424..1282537	+	37	83718305	-	BTH_II1102	-	hypothetical protein
1098	 67.30	0	1282580..1282738	+	52	83717807	-	BTH_II1103	-	hypothetical protein
1099	 73.73	+1	1283058..1283411	+	117	83718000	-	BTH_II1104	-	hypothetical protein
1100	 72.75	+1	1283499..1284221	-	240	83716207	-	BTH_II1105	-	hypothetical protein
1101	 68.75	0	1284318..1285709	-	463	83716890	-	BTH_II1106	-	phosphoesterase family protein
1102	 76.90	+2	1286131..1286472	-	113	83716766	-	BTH_II1107	-	hypothetical protein
1103	 74.14	+1	1286646..1287836	+	396	83717387	-	BTH_II1108	-	beta-lactamase
1104	 69.62	0	1288110..1290140	-	676	83717613	-	BTH_II1109	-	choline/carnitine/betaine transporter
1105	 73.93	+1	1290480..1291415	+	311	83718171	-	BTH_II1110	-	SIS domain-containing protein
1106	 72.89	+1	1291412..1292440	+	342	83716933	-	BTH_II1111	-	asparaginase family protein
1107	 71.69	0	1292481..1294469	+	662	83717703	-	BTH_II1112	-	dipeptide ABC transporter, ATP-binding protein, putative
1108	 65.64	0	1294662..1296224	+	520	83717646	-	BTH_II1113	-	dipeptide ABC transporter periplasmic dipeptide-binding protein, putative
1109	 68.39	0	1296319..1297302	+	327	83718178	-	BTH_II1114	-	dipeptide ABC transporter, permease protein, putative
1110	 69.99	0	1297310..1298212	+	300	83716259	-	BTH_II1115	-	dipeptide ABC transporter, permease protein, putative
1111	 75.76	+1	1298212..1299552	+	446	83716842	-	BTH_II1116	-	D-aminopeptidase, putative
1112	 71.50	0	1299552..1300379	+	275	83717365	-	BTH_II1117	-	dipeptide transport protein, putative
1113	 70.20	0	1300553..1301146	-	197	83717895	-	BTH_II1118	-	protocatechuate 3,4-dioxygenase, alpha subunit
1114	 68.37	0	1301149..1301853	-	234	83716264	-	BTH_II1119	-	protocatechuate 3,4-dioxygenase, beta subunit
1115	 74.95	+1	1301962..1302963	+	333	83717839	-	BTH_II1120	-	LysR family transcriptional regulator
1116	 62.71	-1	1303179..1304012	-	277	83718324	-	BTH_II1121	-	hypothetical protein
1117	 71.99	0	1304761..1306281	+	506	83716605	-	BTH_II1122	-	GGDEF domain-containing protein
1118	 68.95	0	1306459..1307160	+	233	83716984	-	BTH_II1123	-	O-methyltransferase family protein
1119	 70.60	0	1307326..1308444	-	372	83717638	-	BTH_II1124	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1120	 70.33	0	1308434..1308679	+	81	83716771	-	BTH_II1125	-	hypothetical protein
1121	 65.75	0	1308738..1309175	+	145	83717259	-	BTH_II1126	-	DGPF domain-containing protein
1122	 70.80	0	1309317..1311035	-	572	83718150	-	BTH_II1127	-	GGDEF domain-containing protein
1123	 70.77	0	1311165..1311359	-	64	83716282	-	BTH_II1128	-	hypothetical protein
1124	 75.46	+1	1311610..1312905	-	431	83716478	-	BTH_II1129	-	amino acid permease
1125	 74.76	+1	1313250..1318130	-	1626	83716928	-	BTH_II1130	-	DEAD-box ATP dependent DNA helicase
1126	 74.55	+1	1318127..1318291	-	54	83718374	-	BTH_II1131	-	hypothetical protein
1127	 69.33	0	1318407..1318931	-	174	83717691	-	BTH_II1132	-	hypothetical protein
1128	 74.37	+1	1319236..1319754	-	172	83717659	-	BTH_II1133	-	hypothetical protein
1129	 66.72	0	1320236..1321957	+	573	83716972	ggt	BTH_II1134	-	gamma-glutamyltransferase
1130	 64.80	0	1322162..1323604	-	480	83716479	-	BTH_II1135	-	outer membrane protein TolC, putative
1131	 56.28	-2	1323816..1324046	+	76	83717432	-	BTH_II1136	-	hypothetical protein
1132	 63.37	0	1324199..1324471	+	90	83716760	-	BTH_II1137	-	hypothetical protein
1133	 64.08	0	1324607..1326730	+	707	83717714	-	BTH_II1138	-	ABC transporter, permease/ATP-binding protein
1134	 68.31	0	1326835..1327749	+	304	83717020	-	BTH_II1139	-	hypothetical protein
1135	 62.96	-1	1327762..1329057	+	431	83717762	-	BTH_II1140	-	secretion protein, putative
1136	 72.41	+1	1329071..1330585	+	504	83717607	-	BTH_II1141	-	putative lipoprotein
1137	 65.49	0	1330808..1331740	+	310	83716946	-	BTH_II1142	-	hypothetical protein
1138	 63.50	0	1331796..1332458	-	220	83718332	-	BTH_II1143	-	hypothetical protein
1139	 69.47	0	1332457..1334064	+	535	83718258	ilvA-2	BTH_II1144	-	threonine dehydratase
1140	 72.00	0	1334621..1335763	-	380	83717899	-	BTH_II1145	-	membrane protein
1141	 69.43	0	1335835..1336449	-	204	83716319	-	BTH_II1146	-	hypothetical protein
1142	 70.85	0	1336643..1337359	-	238	83716875	-	BTH_II1147	-	hypothetical protein
1143	 69.14	0	1337337..1337984	-	215	83717671	-	BTH_II1148	-	hypothetical protein
1144	 70.13	0	1337981..1340317	-	778	83718168	-	BTH_II1149	-	hypothetical protein
1145	 73.52	+1	1340328..1341305	-	325	83717058	-	BTH_II1150	-	hypothetical protein
1146	 69.37	0	1341348..1341680	+	110	83717587	-	BTH_II1151	-	hypothetical protein
1147	 72.03	+1	1341783..1342043	+	86	83716554	-	BTH_II1153	-	hypothetical protein
1148	 75.00	+1	1341807..1341986	-	59	83717949	-	BTH_II1152	-	hypothetical protein
1149	 74.00	+1	1342436..1343854	+	472	83716916	-	BTH_II1154	-	CAIB/BAIF family CoA transferase
1150	 70.49	0	1344057..1344866	-	269	83717285	-	BTH_II1155	-	short chain dehydrogenase/reductase family oxidoreductase
1151	 70.87	0	1344921..1345823	+	300	83716781	-	BTH_II1156	-	LysR family transcriptional regulator
1152	 68.54	0	1345975..1346667	+	230	83717323	-	BTH_II1157	-	aspartate racemase
1153	 72.68	+1	1346633..1347697	+	354	83717543	-	BTH_II1158	-	LysR family transcriptional regulator
1154	 71.87	0	1347884..1348690	-	268	83716279	-	BTH_II1159	-	ABC transporter, periplasmic substrate-binding protein, putative
1155	 70.63	0	1348754..1349989	-	411	83716322	-	BTH_II1160	-	alcohol dehydrogenase, zinc-containing
1156	 63.48	0	1350231..1351202	-	323	83716865	-	BTH_II1161	-	LysR family transcriptional regulator
1157	 69.70	0	1351373..1352692	+	439	83717239	-	BTH_II1162	-	major facilitator family transporter
1158	 72.36	+1	1352640..1354079	+	479	83718037	-	BTH_II1163	-	allantoate amidohydrolase
1159	 69.21	0	1354110..1355132	+	340	83716756	-	BTH_II1164	-	acetylpolyamine aminohydrolase
1160	 70.44	0	1355588..1358185	-	865	83717430	-	BTH_II1165	-	putative lipoprotein
1161	 72.69	+1	1358405..1359466	-	353	83716082	-	BTH_II1166	-	regulatory protein NasS, putative
1162	 71.02	0	1359484..1360080	-	198	83716484	-	BTH_II1167	-	response regulator NasT
1163	 75.11	+1	1360183..1361058	-	291	83717152	cobA-2	BTH_II1168	-	uroporphyrin-III C-methyltransferase
1164	 70.81	0	1361942..1363267	+	441	83717447	-	BTH_II1169	-	nitrate transporter, putative
1165	 69.73	0	1363174..1365882	+	902	83716272	nirB-2	BTH_II1170	-	nitrite reductase [NAD(P)H], large subunit
1166	 69.21	0	1365920..1366273	+	117	83716467	nirD	BTH_II1171	-	nitrite reductase [NAD(P)H], small subunit
1167	 71.38	0	1366315..1370598	+	1427	83716994	-	BTH_II1172	-	nitrate reductase
1168	 73.17	+1	1370919..1372379	-	486	83717819	xylB-2	BTH_II1173	-	xylulokinase
1169	 68.58	0	1372376..1373368	-	330	83716412	-	BTH_II1174	-	AraC family transcriptional regulator
1170	 72.71	+1	1373407..1374663	-	418	83717036	-	BTH_II1175	-	glycerol-3-phosphate ABC transporter, ATP-binding protein
1171	 70.05	0	1374667..1375701	-	344	83717413	-	BTH_II1176	-	zinc-binding dehydrogenase family oxidoreductase
1172	 68.48	0	1375723..1376547	-	274	83718027	-	BTH_II1177	-	ABC transporter permease
1173	 66.33	0	1376535..1377413	-	292	83716860	-	BTH_II1178	-	sugar ABC transporter, permease protein, putative
1174	 69.03	0	1377596..1378867	-	423	83717337	-	BTH_II1179	-	sugar ABC transporter, periplasmic sugar-binding protein, putative
1175	 68.58	0	1379582..1380052	+	156	83716796	-	BTH_II1180	-	hypothetical protein
1176	 71.16	0	1380281..1381414	-	377	83716595	-	BTH_II1181	-	transporter, putative
1177	 71.20	0	1381444..1382304	-	286	83717869	-	BTH_II1182	-	DeoR family transcriptional regulator
1178	 69.47	0	1382829..1384862	-	677	83717142	-	BTH_II1183	-	DedA family protein
1179	 68.14	0	1384906..1388025	-	1039	83716606	-	BTH_II1184	-	heavy metal efflux pump CzcA, putative
1180	 70.05	0	1388073..1389137	-	354	83716269	-	BTH_II1185	-	metal ion efflux membrane fusion protein family
1181	 71.35	0	1389134..1390669	-	511	83717666	-	BTH_II1186	-	divalent cation resistant determinant protein C, putative
1182	 68.04	0	1390709..1390999	-	96	83717468	-	BTH_II1187	-	hypothetical protein
1183	 66.51	0	1391092..1392408	-	438	83716927	-	BTH_II1188	-	sensor histidine kinase, putative
1184	 67.10	0	1392398..1393087	-	229	83717997	-	BTH_II1189	-	response regulator
1185	 69.47	0	1393623..1393979	-	118	83717777	-	BTH_II1191	-	hypothetical protein
1186	 68.26	0	1393993..1395996	-	667	83716145	-	BTH_II1192	-	hypothetical protein
1187	 65.68	0	1396081..1397403	-	440	83718302	-	BTH_II1193	-	FF domain-containing protein
1188	 70.33	0	1398017..1399762	+	581	83717578	-	BTH_II1194	-	potassium efflux system protein, putative
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.