IslandPathversion 1.0

IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.58 STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1057	 64.07	0	1233884..1237189	+	1101	83716294	-	BTH_II1062	-	host specificity protein J
1058	 57.46	-2	1237183..1237497	+	104	83718055	-	BTH_II1063	-	hypothetical protein
1059	 53.58	-2	1237473..1238213	+	246	83717361	-	BTH_II1064	-	hypothetical protein
1060	 59.91	-1	1238108..1238551	+	147	83718378	-	BTH_II1065	-	holin
1061	 66.00	0	1238554..1239003	+	149	83717617	-	BTH_II1066	-	hypothetical protein
1062	 65.81	0	1238901..1239482	+	193	83716394	-	BTH_II1067	-	gp23
1063	 60.71	-1	1239621..1240409	+	262	83718143	-	BTH_II1068	-	DNA adenine methylase
1064	 61.32	-1	1240512..1241408	+	298	83716997	-	BTH_II1069	-	hypothetical protein
1065	 65.26	0	1242282..1242707	-	141	83717740	-	BTH_II1070	-	MFS transporter, putative
1066	 68.42	0	1242857..1246054	-	1065	83717742	-	BTH_II1071	-	hypothetical protein
1067	 67.43	0	1247285..1248982	-	565	83717344	betA	BTH_II1072	-	choline dehydrogenase
1068	 67.68	0	1249002..1250480	-	492	83718064	betB	BTH_II1073	-	betaine aldehyde dehydrogenase
1069	 69.05	0	1250518..1251105	-	195	83716216	-	BTH_II1074	-	transcriptional regulator BetI
1070	 67.67	0	1252103..1253002	+	299	83716680	-	BTH_II1075	-	rhamnosyltransferase 1, subunit A
1071	 74.65	+1	1253132..1254559	+	475	83717510	-	BTH_II1076	-	rhamnosyltransferase I, subunit B
1072	 70.17	0	1254556..1256127	+	523	83716584	-	BTH_II1077	-	EmrB/QacA family drug resistance transporter
1073	 62.28	-1	1256150..1256263	+	37	83717104	-	BTH_II1078	-	hypothetical protein
1074	 71.53	0	1256260..1257225	+	321	83718138	-	BTH_II1079	-	rhamnosyltransferase family protein
1075	 74.49	+1	1257179..1258840	+	553	83717604	-	BTH_II1080	-	RND efflux system outer membrane lipoprotein
1076	 73.82	+1	1258837..1260303	+	488	83717429	-	BTH_II1081	-	multidrug resistance protein
1077	 61.07	-1	1260520..1261788	-	422	83716872	-	BTH_II1082	-	transposase mutator family protein
1078	 68.00	0	1261875..1264121	-	748	83717106	-	BTH_II1083	-	prolyl oligopeptidase family protein
1079	 68.91	0	1264396..1264929	-	177	83716567	-	BTH_II1084	-	cytochrome b561 family protein
1080	 64.08	0	1265449..1265796	+	115	83717843	-	BTH_II1085	-	ArsR family transcriptional regulator
1081	 71.03	0	1265786..1266220	+	144	83717339	-	BTH_II1086	-	YeeE/YedE family protein
1082	 65.72	0	1266222..1266644	+	140	83717509	-	BTH_II1087	-	hypothetical protein
1083	 63.65	0	1266684..1267247	+	187	83717905	-	BTH_II1088	-	acetyltransferase
1084	 57.75	-2	1267559..1267771	-	70	83718274	-	BTH_II1089	-	hypothetical protein
1085	 66.13	0	1268076..1268639	-	187	83716469	-	BTH_II1090	-	hypothetical protein
1086	 71.54	0	1268662..1269522	-	286	83716804	-	BTH_II1091	-	MerR family transcriptional regulator
1087	 73.71	+1	1269685..1271316	-	543	83717163	-	BTH_II1092	-	di-haem cytochrome c peroxidase family protein
1088	 70.11	0	1271313..1272791	-	492	83717941	-	BTH_II1093	-	Ser/Thr protein phosphatase family protein
1089	 71.85	0	1273010..1273858	-	282	83717524	-	BTH_II1094	-	hydrolase
1090	 70.18	0	1273952..1275259	-	435	83717034	-	BTH_II1095	-	major facilitator family transporter
1091	 67.39	0	1275309..1276142	-	277	83716787	-	BTH_II1096	-	GntR family transcriptional regulator
1092	 68.90	0	1276202..1277497	+	431	83716327	-	BTH_II1097	-	major facilitator family transporter
1093	 67.50	0	1277751..1278473	+	240	83717894	-	BTH_II1098	-	HAD superfamily hydrolase
1094	 68.15	0	1278932..1280350	-	472	83717296	-	BTH_II1099	-	hypothetical protein
1095	 66.08	0	1280686..1281195	-	169	83717061	-	BTH_II1100	-	leucine-responsive regulatory protein, putative
1096	 67.35	0	1281388..1282404	+	338	83716411	-	BTH_II1101	-	1-aminocyclopropane-1-carboxylate deaminase
1097	 79.82	+2	1282424..1282537	+	37	83718305	-	BTH_II1102	-	hypothetical protein
1098	 67.30	0	1282580..1282738	+	52	83717807	-	BTH_II1103	-	hypothetical protein
1099	 73.73	+1	1283058..1283411	+	117	83718000	-	BTH_II1104	-	hypothetical protein
1100	 72.75	+1	1283499..1284221	-	240	83716207	-	BTH_II1105	-	hypothetical protein
1101	 68.75	0	1284318..1285709	-	463	83716890	-	BTH_II1106	-	phosphoesterase family protein
1102	 76.90	+2	1286131..1286472	-	113	83716766	-	BTH_II1107	-	hypothetical protein
1103	 74.14	+1	1286646..1287836	+	396	83717387	-	BTH_II1108	-	beta-lactamase
1104	 69.62	0	1288110..1290140	-	676	83717613	-	BTH_II1109	-	choline/carnitine/betaine transporter
1105	 73.93	+1	1290480..1291415	+	311	83718171	-	BTH_II1110	-	SIS domain-containing protein
1106	 72.89	+1	1291412..1292440	+	342	83716933	-	BTH_II1111	-	asparaginase family protein
1107	 71.69	0	1292481..1294469	+	662	83717703	-	BTH_II1112	-	dipeptide ABC transporter, ATP-binding protein, putative
1108	 65.64	0	1294662..1296224	+	520	83717646	-	BTH_II1113	-	dipeptide ABC transporter periplasmic dipeptide-binding protein, putative
1109	 68.39	0	1296319..1297302	+	327	83718178	-	BTH_II1114	-	dipeptide ABC transporter, permease protein, putative
1110	 69.99	0	1297310..1298212	+	300	83716259	-	BTH_II1115	-	dipeptide ABC transporter, permease protein, putative
1111	 75.76	+1	1298212..1299552	+	446	83716842	-	BTH_II1116	-	D-aminopeptidase, putative
1112	 71.50	0	1299552..1300379	+	275	83717365	-	BTH_II1117	-	dipeptide transport protein, putative
1113	 70.20	0	1300553..1301146	-	197	83717895	-	BTH_II1118	-	protocatechuate 3,4-dioxygenase, alpha subunit
1114	 68.37	0	1301149..1301853	-	234	83716264	-	BTH_II1119	-	protocatechuate 3,4-dioxygenase, beta subunit
1115	 74.95	+1	1301962..1302963	+	333	83717839	-	BTH_II1120	-	LysR family transcriptional regulator
1116	 62.71	-1	1303179..1304012	-	277	83718324	-	BTH_II1121	-	hypothetical protein
1117	 71.99	0	1304761..1306281	+	506	83716605	-	BTH_II1122	-	GGDEF domain-containing protein
1118	 68.95	0	1306459..1307160	+	233	83716984	-	BTH_II1123	-	O-methyltransferase family protein
1119	 70.60	0	1307326..1308444	-	372	83717638	-	BTH_II1124	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1120	 70.33	0	1308434..1308679	+	81	83716771	-	BTH_II1125	-	hypothetical protein
1121	 65.75	0	1308738..1309175	+	145	83717259	-	BTH_II1126	-	DGPF domain-containing protein
1122	 70.80	0	1309317..1311035	-	572	83718150	-	BTH_II1127	-	GGDEF domain-containing protein
1123	 70.77	0	1311165..1311359	-	64	83716282	-	BTH_II1128	-	hypothetical protein
1124	 75.46	+1	1311610..1312905	-	431	83716478	-	BTH_II1129	-	amino acid permease
1125	 74.76	+1	1313250..1318130	-	1626	83716928	-	BTH_II1130	-	DEAD-box ATP dependent DNA helicase
1126	 74.55	+1	1318127..1318291	-	54	83718374	-	BTH_II1131	-	hypothetical protein
1127	 69.33	0	1318407..1318931	-	174	83717691	-	BTH_II1132	-	hypothetical protein
1128	 74.37	+1	1319236..1319754	-	172	83717659	-	BTH_II1133	-	hypothetical protein
1129	 66.72	0	1320236..1321957	+	573	83716972	ggt	BTH_II1134	-	gamma-glutamyltransferase
1130	 64.80	0	1322162..1323604	-	480	83716479	-	BTH_II1135	-	outer membrane protein TolC, putative
1131	 56.28	-2	1323816..1324046	+	76	83717432	-	BTH_II1136	-	hypothetical protein
1132	 63.37	0	1324199..1324471	+	90	83716760	-	BTH_II1137	-	hypothetical protein
1133	 64.08	0	1324607..1326730	+	707	83717714	-	BTH_II1138	-	ABC transporter, permease/ATP-binding protein
1134	 68.31	0	1326835..1327749	+	304	83717020	-	BTH_II1139	-	hypothetical protein
1135	 62.96	-1	1327762..1329057	+	431	83717762	-	BTH_II1140	-	secretion protein, putative
1136	 72.41	+1	1329071..1330585	+	504	83717607	-	BTH_II1141	-	putative lipoprotein
1137	 65.49	0	1330808..1331740	+	310	83716946	-	BTH_II1142	-	hypothetical protein
1138	 63.50	0	1331796..1332458	-	220	83718332	-	BTH_II1143	-	hypothetical protein
1139	 69.47	0	1332457..1334064	+	535	83718258	ilvA-2	BTH_II1144	-	threonine dehydratase
1140	 72.00	0	1334621..1335763	-	380	83717899	-	BTH_II1145	-	membrane protein
1141	 69.43	0	1335835..1336449	-	204	83716319	-	BTH_II1146	-	hypothetical protein
1142	 70.85	0	1336643..1337359	-	238	83716875	-	BTH_II1147	-	hypothetical protein
1143	 69.14	0	1337337..1337984	-	215	83717671	-	BTH_II1148	-	hypothetical protein
1144	 70.13	0	1337981..1340317	-	778	83718168	-	BTH_II1149	-	hypothetical protein
1145	 73.52	+1	1340328..1341305	-	325	83717058	-	BTH_II1150	-	hypothetical protein
1146	 69.37	0	1341348..1341680	+	110	83717587	-	BTH_II1151	-	hypothetical protein
1147	 72.03	+1	1341783..1342043	+	86	83716554	-	BTH_II1153	-	hypothetical protein
1148	 75.00	+1	1341807..1341986	-	59	83717949	-	BTH_II1152	-	hypothetical protein
1149	 74.00	+1	1342436..1343854	+	472	83716916	-	BTH_II1154	-	CAIB/BAIF family CoA transferase
1150	 70.49	0	1344057..1344866	-	269	83717285	-	BTH_II1155	-	short chain dehydrogenase/reductase family oxidoreductase
1151	 70.87	0	1344921..1345823	+	300	83716781	-	BTH_II1156	-	LysR family transcriptional regulator
1152	 68.54	0	1345975..1346667	+	230	83717323	-	BTH_II1157	-	aspartate racemase
1153	 72.68	+1	1346633..1347697	+	354	83717543	-	BTH_II1158	-	LysR family transcriptional regulator
1154	 71.87	0	1347884..1348690	-	268	83716279	-	BTH_II1159	-	ABC transporter, periplasmic substrate-binding protein, putative
1155	 70.63	0	1348754..1349989	-	411	83716322	-	BTH_II1160	-	alcohol dehydrogenase, zinc-containing
1156	 63.48	0	1350231..1351202	-	323	83716865	-	BTH_II1161	-	LysR family transcriptional regulator
67.58	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.