IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.58   STD DEV: 4.44
Burkholderia thailandensis E264 chromosome II, complete sequence - 1..2914771
2358 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
990	 67.01	0	1180738..1182210	+	490	83718269	sdaA-2	BTH_II0995	-	L-serine ammonia-lyase
991	 66.91	0	1182227..1183471	+	414	83716659	-	BTH_II0996	-	sarcosine oxidase, beta subunit, putative
992	 65.31	0	1183600..1183893	+	97	83716133	-	BTH_II0997	-	sarcosine oxidase delta subunit (sarcosine oxidasesubunit D)
993	 68.46	0	1183890..1186898	+	1002	83717636	-	BTH_II0998	-	sarcosine oxidase, alpha subunit
994	 69.97	0	1186888..1187523	+	211	83717171	-	BTH_II0999	-	sarcosine oxidase subunit gamma
995	 71.43	0	1187523..1187984	+	153	83717054	-	BTH_II1000	-	dihydroneopterin aldolase, putative
996	 58.22	-2	1188263..1188475	-	70	83716560	rpsU-2	BTH_II1001	-	30S ribosomal protein S21
997	 56.37	-2	1189126..1189329	+	67	83717433	-	BTH_II1002	-	cold-shock domain-contain protein
998	 69.57	0	1190038..1190484	-	148	83717279	-	BTH_II1003	-	hypothetical protein
999	 65.90	0	1190757..1191017	+	86	83716581	-	BTH_II1004	-	hypothetical protein
1000	 78.71	+2	1191297..1191545	+	82	83717120	-	BTH_II1005	-	glyoxylate reductase
1001	 66.05	0	1191585..1192070	+	161	83717531	-	BTH_II1006	-	OsmC/Ohr family protein
1002	 68.22	0	1192310..1194748	+	812	83717440	-	BTH_II1007	-	sensory box histidine kinase
1003	 61.59	-1	1194774..1195226	+	150	83718090	-	BTH_II1008	-	response regulator
1004	 67.17	0	1195310..1196701	+	463	83716080	-	BTH_II1009	-	sensory box histidine kinase/response regulator
1005	 70.34	0	1196765..1197961	-	398	83716736	-	BTH_II1010	-	major facilitator family transporter
1006	 54.88	-2	1197986..1199113	-	375	83717795	-	BTH_II1011	-	integrase-like protein
1007	 64.22	0	1199349..1201103	-	584	83718214	-	BTH_II1012	-	gp38
1008	 58.42	-2	1201118..1201396	-	92	83716362	-	BTH_II1013	-	gp44
1009	 58.84	-1	1201396..1201791	-	131	83718262	-	BTH_II1014	-	hypothetical protein
1010	 62.50	-1	1201794..1202465	-	223	83717575	-	BTH_II1015	-	gp41
1011	 55.64	-2	1202479..1203249	-	256	83716901	-	BTH_II1016	-	gp42
1012	 59.90	-1	1203448..1204260	-	270	83718225	-	BTH_II1017	-	bacteriophage/transposase fusion protein
1013	 59.33	-1	1204257..1204406	-	49	83716051	-	BTH_II1018	-	phage protein, putative
1014	 62.50	-1	1204714..1204833	-	39	83717178	-	BTH_II1019	-	gp40-related protein
1015	 62.12	-1	1204857..1204988	-	43	83717005	-	BTH_II1020	-	gp56-related protein
1016	 58.70	-2	1204999..1205274	-	91	83716403	-	BTH_II1021	-	gp49
1017	 63.19	0	1205515..1205658	+	47	83716679	-	BTH_II1022	-	gp50
1018	 47.29	-2	1205674..1205931	+	85	83716180	-	BTH_II1023	-	gp51
1019	 63.36	0	1206159..1206551	-	130	83717665	-	BTH_II1024	-	gp52
1020	 59.46	-1	1207002..1207334	+	110	83716210	-	BTH_II1025	-	gp63
1021	 54.24	-2	1207331..1207684	-	117	83716974	-	BTH_II1026	-	gp64
1022	 63.33	0	1207725..1208204	+	159	83717929	-	BTH_II1027	-	gp65
1023	 64.89	0	1208219..1209403	+	394	83716252	-	BTH_II1028	-	Mte8-like protein
1024	 63.76	0	1209408..1210544	+	378	83716880	-	BTH_II1029	-	gp56
1025	 62.86	-1	1210541..1211539	+	332	83717395	-	BTH_II1030	-	gp57
1026	 65.09	0	1211574..1212395	+	273	83716828	-	BTH_II1031	-	gp58
1027	 64.75	0	1212392..1212652	+	86	83717449	-	BTH_II1032	-	gp69
1028	 61.97	-1	1212863..1213798	+	311	83717213	-	BTH_II1033	-	gp60
1029	 61.59	-1	1213795..1214346	+	183	83717876	-	BTH_II1034	-	gp72
1030	 59.94	-1	1214343..1214699	+	118	83717977	-	BTH_II1035	-	gp62
1031	 61.84	-1	1214681..1215136	+	151	83716439	-	BTH_II1036	-	gp74
1032	 60.06	-1	1215139..1215471	+	110	83716485	-	BTH_II1037	-	gp64
1033	 59.39	-1	1215447..1215707	+	86	83716074	-	BTH_II1038	-	gp65
1034	 61.49	-1	1215704..1216147	+	147	83717158	-	BTH_II1039	-	hypothetical protein
1035	 57.04	-2	1216197..1216466	+	89	83717580	-	BTH_II1040	-	hypothetical protein
1036	 62.46	-1	1216450..1216734	+	94	83718204	-	BTH_II1041	-	hypothetical protein
1037	 63.42	0	1216935..1217273	+	112	83717854	-	BTH_II1042	-	59R
1038	 60.70	-1	1217359..1217844	+	161	83716048	-	BTH_II1043	-	hypothetical protein
1039	 59.72	-1	1217844..1219586	+	580	83717767	-	BTH_II1044	-	phage terminase, large subunit, putative
1040	 60.16	-1	1219507..1220889	+	460	83716795	-	BTH_II1045	-	head portal protein
1041	 63.70	0	1220867..1221709	+	280	83718056	-	BTH_II1046	-	ClpP protease
1042	 61.46	-1	1221666..1222991	+	441	83716436	-	BTH_II1047	-	HK97 family phage major capsid protein
1043	 60.61	-1	1223063..1223227	+	54	83716940	-	BTH_II1048	-	hypothetical protein
1044	 58.19	-2	1223231..1223572	+	113	83718052	-	BTH_II1049	-	hypothetical protein
1045	 60.91	-1	1223575..1223904	+	109	83717783	-	BTH_II1050	-	phage head-tail adaptor, putative
1046	 64.30	0	1223897..1224319	+	140	83717930	-	BTH_II1051	-	HK97 family phage protein
1047	 61.49	-1	1224316..1224663	+	115	83717033	-	BTH_II1052	-	gp10
1048	 60.76	-1	1224660..1225184	+	174	83718160	-	BTH_II1053	-	gp11
1049	 62.37	-1	1225212..1225676	+	154	83717483	-	BTH_II1054	-	Phage tail assembly chaperone
1050	 65.33	0	1225511..1225960	+	149	83716373	-	BTH_II1055	-	hypothetical protein
1051	 66.13	0	1225974..1230074	+	1366	83716976	-	BTH_II1056	-	hypothetical protein
1052	 60.77	-1	1230071..1230409	+	112	83716460	-	BTH_II1057	-	Phage minor tail protein
1053	 58.71	-1	1230418..1231824	+	468	83717968	-	BTH_II1058	-	hypothetical protein
1054	 62.43	-1	1231821..1232504	+	227	83716138	-	BTH_II1059	-	phage minor tail protein L
1055	 65.07	0	1232554..1233306	+	250	83716657	-	BTH_II1060	-	hypothetical protein
1056	 64.62	0	1233303..1233887	+	194	83717443	-	BTH_II1061	-	bacteriophage lambda tail assembly protein I
1057	 64.07	0	1233884..1237189	+	1101	83716294	-	BTH_II1062	-	host specificity protein J
1058	 57.46	-2	1237183..1237497	+	104	83718055	-	BTH_II1063	-	hypothetical protein
1059	 53.58	-2	1237473..1238213	+	246	83717361	-	BTH_II1064	-	hypothetical protein
1060	 59.91	-1	1238108..1238551	+	147	83718378	-	BTH_II1065	-	holin
1061	 66.00	0	1238554..1239003	+	149	83717617	-	BTH_II1066	-	hypothetical protein
1062	 65.81	0	1238901..1239482	+	193	83716394	-	BTH_II1067	-	gp23
1063	 60.71	-1	1239621..1240409	+	262	83718143	-	BTH_II1068	-	DNA adenine methylase
1064	 61.32	-1	1240512..1241408	+	298	83716997	-	BTH_II1069	-	hypothetical protein
1065	 65.26	0	1242282..1242707	-	141	83717740	-	BTH_II1070	-	MFS transporter, putative
1066	 68.42	0	1242857..1246054	-	1065	83717742	-	BTH_II1071	-	hypothetical protein
1067	 67.43	0	1247285..1248982	-	565	83717344	betA	BTH_II1072	-	choline dehydrogenase
1068	 67.68	0	1249002..1250480	-	492	83718064	betB	BTH_II1073	-	betaine aldehyde dehydrogenase
1069	 69.05	0	1250518..1251105	-	195	83716216	-	BTH_II1074	-	transcriptional regulator BetI
1070	 67.67	0	1252103..1253002	+	299	83716680	-	BTH_II1075	-	rhamnosyltransferase 1, subunit A
1071	 74.65	+1	1253132..1254559	+	475	83717510	-	BTH_II1076	-	rhamnosyltransferase I, subunit B
1072	 70.17	0	1254556..1256127	+	523	83716584	-	BTH_II1077	-	EmrB/QacA family drug resistance transporter
1073	 62.28	-1	1256150..1256263	+	37	83717104	-	BTH_II1078	-	hypothetical protein
1074	 71.53	0	1256260..1257225	+	321	83718138	-	BTH_II1079	-	rhamnosyltransferase family protein
1075	 74.49	+1	1257179..1258840	+	553	83717604	-	BTH_II1080	-	RND efflux system outer membrane lipoprotein
1076	 73.82	+1	1258837..1260303	+	488	83717429	-	BTH_II1081	-	multidrug resistance protein
1077	 61.07	-1	1260520..1261788	-	422	83716872	-	BTH_II1082	-	transposase mutator family protein
1078	 68.00	0	1261875..1264121	-	748	83717106	-	BTH_II1083	-	prolyl oligopeptidase family protein
1079	 68.91	0	1264396..1264929	-	177	83716567	-	BTH_II1084	-	cytochrome b561 family protein
1080	 64.08	0	1265449..1265796	+	115	83717843	-	BTH_II1085	-	ArsR family transcriptional regulator
1081	 71.03	0	1265786..1266220	+	144	83717339	-	BTH_II1086	-	YeeE/YedE family protein
1082	 65.72	0	1266222..1266644	+	140	83717509	-	BTH_II1087	-	hypothetical protein
1083	 63.65	0	1266684..1267247	+	187	83717905	-	BTH_II1088	-	acetyltransferase
1084	 57.75	-2	1267559..1267771	-	70	83718274	-	BTH_II1089	-	hypothetical protein
1085	 66.13	0	1268076..1268639	-	187	83716469	-	BTH_II1090	-	hypothetical protein
1086	 71.54	0	1268662..1269522	-	286	83716804	-	BTH_II1091	-	MerR family transcriptional regulator
1087	 73.71	+1	1269685..1271316	-	543	83717163	-	BTH_II1092	-	di-haem cytochrome c peroxidase family protein
1088	 70.11	0	1271313..1272791	-	492	83717941	-	BTH_II1093	-	Ser/Thr protein phosphatase family protein
1089	 71.85	0	1273010..1273858	-	282	83717524	-	BTH_II1094	-	hydrolase
67.58	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.