IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
739	 68.66	0	839643..840596	-	317	78061592	-	Bcep18194_B0742	-	Fatty acid desaturase
740	 70.72	+1	840688..842217	-	509	78061593	-	Bcep18194_B0743	-	monooxygenase, FAD-binding
741	 67.41	0	842367..843041	+	224	78061594	-	Bcep18194_B0744	-	TetR family transcriptional regulator
742	 66.51	0	843105..843740	-	211	78061595	-	Bcep18194_B0745	-	isochorismatase hydrolase
743	 59.17	-2	844085..844471	+	128	78061596	-	Bcep18194_B0746	-	glyoxalase/bleomycin resistance protein/dioxygenase
744	 63.98	0	844710..845267	-	185	78061597	-	Bcep18194_B0747	-	hypothetical protein
745	 60.12	-1	845403..846242	-	279	78061598	-	Bcep18194_B0748	-	hypothetical protein
746	 52.89	-2	846566..847066	-	166	78061599	-	Bcep18194_B0749	-	hypothetical protein
747	 55.34	-2	847284..847742	+	152	78061600	-	Bcep18194_B0750	-	GCN5-related N-acetyltransferase
748	 65.57	0	847862..848776	-	304	78061601	-	Bcep18194_B0751	-	glutaminase
749	 66.10	0	848996..849706	+	236	78061602	-	Bcep18194_B0752	-	two component transcriptional regulator
750	 66.40	0	849771..850901	+	376	78061603	-	Bcep18194_B0753	-	periplasmic sensor signal transduction histidine kinase
751	 63.46	0	851200..851823	+	207	78061604	-	Bcep18194_B0754	-	NAD(P)H dehydrogenase (quinone)
752	 69.36	0	851881..854295	-	804	78061605	-	Bcep18194_B0755	-	patatin
753	 70.70	+1	854566..855606	+	346	78061606	-	Bcep18194_B0756	-	cell shape determining protein MreB/Mrl
754	 69.71	0	855863..856486	+	207	78061607	-	Bcep18194_B0757	-	hypothetical protein
755	 70.62	+1	856999..864189	+	2396	78061608	-	Bcep18194_B0758	-	outer membrane autotransporter barrel
756	 70.36	0	864342..866564	+	740	78061609	-	Bcep18194_B0759	-	Amylo-alpha-1,6-glucosidase
757	 66.27	0	866661..866912	+	83	78061610	-	Bcep18194_B0760	-	hypothetical protein
758	 69.36	0	867409..868299	-	296	78061611	-	Bcep18194_B0761	-	LysR family transcriptional regulator
759	 70.04	0	868428..869375	+	315	78061612	-	Bcep18194_B0762	-	Beta-lactamase
760	 68.09	0	869856..870278	-	140	78061613	-	Bcep18194_B0763	-	hypothetical protein
761	 63.14	-1	870629..870997	-	122	78061614	-	Bcep18194_B0764	-	antibiotic biosynthesis monooxygenase
762	 65.02	0	871038..871523	-	161	78061615	-	Bcep18194_B0765	-	MarR family transcriptional regulator
763	 61.39	-1	871694..872167	+	157	78061616	-	Bcep18194_B0766	-	hypothetical protein
764	 69.77	0	872317..873702	-	461	78061617	-	Bcep18194_B0767	-	periplasmic sensor signal transduction histidine kinase
765	 68.63	0	873699..874361	-	220	78061618	-	Bcep18194_B0768	-	two component transcriptional regulator
766	 62.71	-1	874594..874947	+	117	78061619	-	Bcep18194_B0769	-	hypothetical protein
767	 68.64	0	875003..875863	+	286	78061620	-	Bcep18194_B0770	-	RpiR family transcriptional regulator
768	 68.54	0	875919..876344	+	141	78061621	-	Bcep18194_B0771	-	GCN5-related N-acetyltransferase
769	 71.88	+1	876538..878205	+	555	78061622	-	Bcep18194_B0772	-	hypothetical protein
770	 70.85	+1	878380..879240	+	286	78061623	-	Bcep18194_B0773	-	PEP phosphonomutase
771	 62.55	-1	879578..879844	+	88	78061624	-	Bcep18194_B0774	-	hypothetical protein
772	 72.87	+1	879946..881121	+	391	78061625	-	Bcep18194_B0775	-	cytochrome P450-like
773	 65.75	0	881137..881463	-	108	78061626	-	Bcep18194_B0776	-	hypothetical protein
774	 70.48	0	881565..881984	-	139	78061627	-	Bcep18194_B0777	-	rhodanese-like protein
775	 70.77	+1	882096..883070	+	324	78061628	ftrA	Bcep18194_B0778	-	transcriptional activator FtrA
776	 66.50	0	883231..885570	-	779	78061629	-	Bcep18194_B0779	-	arginine decarboxylase
777	 67.45	0	885574..887106	-	510	78061630	-	Bcep18194_B0780	-	arginine:agmatin antiporter
778	 73.98	+1	887467..888615	+	382	78061631	-	Bcep18194_B0781	-	2-nitropropane dioxygenase, NPD
779	 69.35	0	888696..890150	+	484	78061632	-	Bcep18194_B0782	-	peptidase M20
780	 70.27	0	890213..891322	+	369	78061633	-	Bcep18194_B0783	-	hypothetical protein
781	 66.38	0	891319..892368	+	349	78061634	-	Bcep18194_B0784	-	TfoX-like protein
782	 67.70	0	892676..893254	+	192	78061635	-	Bcep18194_B0785	-	membrane protein, NnrU-like
783	 63.77	0	893386..894765	-	459	78061636	-	Bcep18194_B0786	-	amino acid tranporter
784	 66.95	0	895186..896241	+	351	78061637	-	Bcep18194_B0787	-	Rieske (2Fe-2S) protein
785	 63.74	0	896261..896431	+	56	78061638	-	Bcep18194_B0788	-	rubredoxin-type Fe(Cys)4 protein
786	 70.78	+1	896428..897618	+	396	78061639	-	Bcep18194_B0789	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
787	 66.77	0	897777..898718	-	313	78061640	-	Bcep18194_B0790	-	LysR family transcriptional regulator
788	 68.56	0	898946..899683	-	245	78061641	-	Bcep18194_B0791	-	hypothetical protein
789	 68.13	0	900308..901603	+	431	78061642	-	Bcep18194_B0792	-	hypothetical protein
790	 67.67	0	901652..902248	-	198	78061643	-	Bcep18194_B0793	-	hypothetical protein
791	 64.47	0	902245..902472	-	75	78061644	-	Bcep18194_B0794	-	hypothetical protein
792	 65.56	0	902759..903931	-	390	78061645	-	Bcep18194_B0795	-	hypothetical protein
793	 61.41	-1	903977..904642	-	221	78061646	-	Bcep18194_B0796	-	DSBA oxidoreductase
794	 60.09	-1	904756..905682	+	308	78061647	-	Bcep18194_B0797	-	LysR family transcriptional regulator
795	 72.49	+1	905802..906230	+	142	78061648	-	Bcep18194_B0798	-	hypothetical protein
796	 62.54	-1	906302..906979	-	225	78061649	-	Bcep18194_B0799	-	TetR family transcriptional regulator
797	 62.44	-1	907020..908273	-	417	78061650	-	Bcep18194_B0800	-	N-isopropylammelide isopropylaminohydrolase
798	 64.43	0	908317..909612	-	431	78061651	codB	Bcep18194_B0801	-	cytosine permease
799	 72.02	+1	909895..911184	+	429	78061652	-	Bcep18194_B0802	-	FAD dependent oxidoreductase
800	 65.77	0	911202..911759	+	185	78061653	-	Bcep18194_B0803	-	XRE family transcriptional regulator
801	 66.67	0	911912..913258	+	448	78061654	-	Bcep18194_B0804	-	glutamine synthetase, catalytic region
802	 63.84	0	913409..913762	+	117	78061655	-	Bcep18194_B0805	-	hypothetical protein
803	 63.85	0	913759..914220	+	153	78061656	-	Bcep18194_B0806	-	(2Fe-2S)-binding protein
804	 68.84	0	914217..916469	+	750	78061657	-	Bcep18194_B0807	-	aldehyde oxidase
805	 68.57	0	916509..917822	+	437	78061658	-	Bcep18194_B0808	-	cytochrome c, class I
806	 67.17	0	917951..919141	-	396	78061659	-	Bcep18194_B0809	-	monooxygenase, FAD-binding
807	 65.69	0	919295..920215	+	306	78061660	-	Bcep18194_B0810	-	LysR family transcriptional regulator
808	 64.81	0	920210..920749	-	179	78061661	-	Bcep18194_B0811	-	GCN5-related N-acetyltransferase
809	 59.93	-1	920800..921378	-	192	78061662	-	Bcep18194_B0812	-	hypothetical protein
810	 64.87	0	921472..921861	-	129	78061663	-	Bcep18194_B0813	-	hypothetical protein
811	 69.53	0	921916..922683	-	255	78061664	-	Bcep18194_B0814	-	cell wall hydrolase/autolysin
812	 71.05	+1	922787..924406	-	539	78061665	-	Bcep18194_B0815	-	hypothetical protein
813	 66.27	0	924406..925920	-	504	78061666	-	Bcep18194_B0816	-	spermidine synthase
814	 62.79	-1	926042..926428	+	128	78061667	-	Bcep18194_B0817	-	hypothetical protein
815	 67.24	0	926456..927508	+	350	78061668	-	Bcep18194_B0818	-	putative virion core protein
816	 68.45	0	927518..929035	+	505	78061669	-	Bcep18194_B0819	-	hypothetical protein
817	 70.05	0	929178..929561	+	127	78061670	-	Bcep18194_B0820	-	S-adenosylmethionine decarboxylase related
818	 65.37	0	929588..929974	+	128	78061671	-	Bcep18194_B0821	-	hypothetical protein
819	 64.01	0	930133..930921	-	262	78061672	-	Bcep18194_B0822	-	hypothetical protein
820	 64.53	0	931043..931930	-	295	78061673	-	Bcep18194_B0823	-	hypothetical protein
821	 66.00	0	932155..932607	-	150	78061674	-	Bcep18194_B0824	-	hypothetical protein
822	 65.71	0	932799..933839	+	346	78061675	-	Bcep18194_B0825	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
823	 64.99	0	933913..935346	+	477	78061676	-	Bcep18194_B0826	-	putative nicotinate phosphoribosyltransferase
824	 58.78	-2	935419..935976	-	185	78061677	-	Bcep18194_B0827	-	GCN5-related N-acetyltransferase
825	 71.44	+1	936214..937680	-	488	78061678	-	Bcep18194_B0828	-	GntR family transcriptional regulator
826	 69.82	0	937808..938695	+	295	78061679	-	Bcep18194_B0829	-	hypothetical protein
827	 64.77	0	938753..939121	-	122	78061680	-	Bcep18194_B0830	-	glyoxalase/bleomycin resistance protein/dioxygenase
828	 66.80	0	939166..939900	+	244	78061681	-	Bcep18194_B0831	-	transcriptional regulator-like
829	 62.90	-1	939973..940317	-	114	78061682	-	Bcep18194_B0832	-	hypothetical protein
830	 67.94	0	940394..941575	-	393	78061683	-	Bcep18194_B0833	-	cystathionine beta-lyase
831	 62.67	-1	941626..942375	-	249	78061684	-	Bcep18194_B0834	-	ABC polar amino acid transporter, ATPase subunit
832	 66.21	0	942395..943054	-	219	78061685	-	Bcep18194_B0835	-	amino acid ABC transporter inner membrane protein
833	 63.92	0	943130..943930	-	266	78061686	-	Bcep18194_B0836	-	ABC amino acid transporter, periplasmic ligand binding protein
834	 67.96	0	944521..945759	-	412	78061687	-	Bcep18194_B0837	-	diaminopimelate decarboxylase
835	 69.51	0	945869..946783	+	304	78061688	-	Bcep18194_B0838	-	DNA-binding transcriptional regulator LysR
836	 63.17	-1	946838..947437	+	199	78061689	-	Bcep18194_B0839	-	GCN5-related N-acetyltransferase
837	 67.18	0	947551..948129	-	192	78061690	-	Bcep18194_B0840	-	hypothetical protein
838	 68.27	0	948531..949154	-	207	78061691	-	Bcep18194_B0841	-	haloacid dehalogenase-like hydrolase
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.