IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
689	 68.10	0	786803..787432	-	209	78061542	-	Bcep18194_B0692	-	lysine exporter protein LysE/YggA
690	 67.79	0	787736..788182	-	148	78061543	-	Bcep18194_B0693	-	hypothetical protein
691	 66.39	0	788263..788628	-	121	78061544	-	Bcep18194_B0694	-	copper resistance protein CopC
692	 69.84	0	788931..789308	-	125	78061545	-	Bcep18194_B0695	-	hypothetical protein
693	 64.65	0	789410..789904	-	164	78061546	-	Bcep18194_B0696	-	hypothetical protein
694	 68.32	0	789964..790266	-	100	78061547	-	Bcep18194_B0697	-	ferredoxin
695	 70.17	0	790355..792268	-	637	78061548	-	Bcep18194_B0698	-	Fis family GAF modulated sigma54 specific transcriptional regulator
696	 66.15	0	792691..792882	+	63	78061549	-	Bcep18194_B0699	-	hypothetical protein
697	 65.28	0	793123..793410	+	95	78061550	-	Bcep18194_B0700	-	hypothetical protein
698	 67.84	0	793644..795602	+	652	78061551	-	Bcep18194_B0701	-	TPR repeat-containing protein
699	 65.21	0	795708..797009	-	433	78061552	-	Bcep18194_B0702	-	xanthine/uracil/vitamin C transporter
700	 68.87	0	797153..797560	+	135	78061553	-	Bcep18194_B0703	-	hypothetical protein
701	 63.44	0	797799..798077	+	92	78061554	-	Bcep18194_B0704	-	hypothetical protein
702	 70.40	0	798238..798612	-	124	78061555	-	Bcep18194_B0705	-	hypothetical protein
703	 65.13	0	798939..799328	-	129	78061556	-	Bcep18194_B0706	-	hypothetical protein
704	 65.62	0	799580..799867	-	95	78061557	-	Bcep18194_B0707	-	hypothetical protein
705	 66.11	0	799946..800851	-	301	78061558	-	Bcep18194_B0708	-	metal-dependent hydrolase
706	 70.92	+1	800882..802669	-	595	78061559	-	Bcep18194_B0709	-	short chain dehydrogenase
707	 68.22	0	802715..803614	-	299	78061560	-	Bcep18194_B0710	-	hypothetical protein
708	 65.76	0	804228..805001	-	257	78061561	-	Bcep18194_B0711	-	SPFH domain-containing protein/band 7 family protein
709	 73.57	+1	804998..806575	-	525	78061562	-	Bcep18194_B0712	-	membrane-bound serine protease
710	 69.95	0	806697..807731	-	344	78061563	-	Bcep18194_B0713	-	AraC family transcriptional regulator
711	 66.67	0	807869..809002	+	377	78061564	-	Bcep18194_B0714	-	Acyl-CoA dehydrogenase
712	 66.12	0	809107..810936	+	609	78061565	-	Bcep18194_B0715	-	AMP-dependent synthetase and ligase
713	 66.20	0	811047..812561	+	504	78061566	-	Bcep18194_B0716	-	methylmalonate-semialdehyde dehydrogenase [acylating]
714	 68.78	0	812580..813479	+	299	78061567	-	Bcep18194_B0717	-	3-hydroxyisobutyrate dehydrogenase
715	 71.34	+1	813479..814270	+	263	78061568	-	Bcep18194_B0718	-	enoyl-CoA hydratase
716	 69.04	0	814267..815406	+	379	78061569	-	Bcep18194_B0719	-	enoyl-CoA hydratase/isomerase
717	 68.97	0	815546..816589	+	347	78061570	-	Bcep18194_B0720	-	putative ammonia monooxygenase
718	 67.38	0	816645..817625	-	326	78061571	-	Bcep18194_B0721	-	LysR family transcriptional regulator
719	 69.79	0	817727..819265	+	512	78061572	-	Bcep18194_B0722	-	major facilitator transporter
720	 71.78	+1	819308..820714	-	468	78061573	-	Bcep18194_B0723	-	RND efflux system outer membrane lipoprotein
721	 67.49	0	820695..822758	-	687	78061574	-	Bcep18194_B0724	-	hypothetical protein
722	 68.26	0	822761..823954	-	397	78061575	-	Bcep18194_B0725	-	HlyD family secretion protein
723	 70.10	0	824251..824979	-	242	78061576	-	Bcep18194_B0726	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
724	 66.84	0	825035..825616	-	193	78061577	-	Bcep18194_B0727	-	metal-dependent phosphohydrolase
725	 63.37	0	825725..825997	-	90	78061578	-	Bcep18194_B0728	-	hypothetical protein
726	 69.14	0	826051..826617	-	188	78061579	-	Bcep18194_B0729	-	XRE family transcriptional regulator
727	 65.11	0	826671..827312	-	213	78061580	-	Bcep18194_B0730	-	hypothetical protein
728	 67.81	0	827656..829059	+	467	78061581	-	Bcep18194_B0731	-	hypothetical protein
729	 71.85	+1	829156..829734	+	192	78061582	-	Bcep18194_B0732	-	hypothetical protein
730	 64.32	0	829775..830668	+	297	78061583	-	Bcep18194_B0733	-	ribonuclease T2
731	 69.20	0	830714..832174	-	486	78061584	-	Bcep18194_B0734	-	Fatty acid desaturase
732	 69.06	0	832236..832946	+	236	78061585	-	Bcep18194_B0735	-	hypothetical protein
733	 70.16	0	832956..834071	+	371	78061586	-	Bcep18194_B0736	-	hypothetical protein
734	 71.44	+1	834059..834958	-	299	78061587	-	Bcep18194_B0737	-	hypothetical protein
735	 68.90	0	834955..835848	-	297	78061588	-	Bcep18194_B0738	-	metal-dependent hydrolase
736	 66.03	0	835944..836882	+	312	78061589	-	Bcep18194_B0739	-	Fatty acid desaturase
737	 70.79	+1	836882..838480	+	532	78061590	-	Bcep18194_B0740	-	auxin-responsive GH3-related protein
738	 66.84	0	838473..839621	+	382	78061591	-	Bcep18194_B0741	-	Rieske (2Fe-2S) protein
739	 68.66	0	839643..840596	-	317	78061592	-	Bcep18194_B0742	-	Fatty acid desaturase
740	 70.72	+1	840688..842217	-	509	78061593	-	Bcep18194_B0743	-	monooxygenase, FAD-binding
741	 67.41	0	842367..843041	+	224	78061594	-	Bcep18194_B0744	-	TetR family transcriptional regulator
742	 66.51	0	843105..843740	-	211	78061595	-	Bcep18194_B0745	-	isochorismatase hydrolase
743	 59.17	-2	844085..844471	+	128	78061596	-	Bcep18194_B0746	-	glyoxalase/bleomycin resistance protein/dioxygenase
744	 63.98	0	844710..845267	-	185	78061597	-	Bcep18194_B0747	-	hypothetical protein
745	 60.12	-1	845403..846242	-	279	78061598	-	Bcep18194_B0748	-	hypothetical protein
746	 52.89	-2	846566..847066	-	166	78061599	-	Bcep18194_B0749	-	hypothetical protein
747	 55.34	-2	847284..847742	+	152	78061600	-	Bcep18194_B0750	-	GCN5-related N-acetyltransferase
748	 65.57	0	847862..848776	-	304	78061601	-	Bcep18194_B0751	-	glutaminase
749	 66.10	0	848996..849706	+	236	78061602	-	Bcep18194_B0752	-	two component transcriptional regulator
750	 66.40	0	849771..850901	+	376	78061603	-	Bcep18194_B0753	-	periplasmic sensor signal transduction histidine kinase
751	 63.46	0	851200..851823	+	207	78061604	-	Bcep18194_B0754	-	NAD(P)H dehydrogenase (quinone)
752	 69.36	0	851881..854295	-	804	78061605	-	Bcep18194_B0755	-	patatin
753	 70.70	+1	854566..855606	+	346	78061606	-	Bcep18194_B0756	-	cell shape determining protein MreB/Mrl
754	 69.71	0	855863..856486	+	207	78061607	-	Bcep18194_B0757	-	hypothetical protein
755	 70.62	+1	856999..864189	+	2396	78061608	-	Bcep18194_B0758	-	outer membrane autotransporter barrel
756	 70.36	0	864342..866564	+	740	78061609	-	Bcep18194_B0759	-	Amylo-alpha-1,6-glucosidase
757	 66.27	0	866661..866912	+	83	78061610	-	Bcep18194_B0760	-	hypothetical protein
758	 69.36	0	867409..868299	-	296	78061611	-	Bcep18194_B0761	-	LysR family transcriptional regulator
759	 70.04	0	868428..869375	+	315	78061612	-	Bcep18194_B0762	-	Beta-lactamase
760	 68.09	0	869856..870278	-	140	78061613	-	Bcep18194_B0763	-	hypothetical protein
761	 63.14	-1	870629..870997	-	122	78061614	-	Bcep18194_B0764	-	antibiotic biosynthesis monooxygenase
762	 65.02	0	871038..871523	-	161	78061615	-	Bcep18194_B0765	-	MarR family transcriptional regulator
763	 61.39	-1	871694..872167	+	157	78061616	-	Bcep18194_B0766	-	hypothetical protein
764	 69.77	0	872317..873702	-	461	78061617	-	Bcep18194_B0767	-	periplasmic sensor signal transduction histidine kinase
765	 68.63	0	873699..874361	-	220	78061618	-	Bcep18194_B0768	-	two component transcriptional regulator
766	 62.71	-1	874594..874947	+	117	78061619	-	Bcep18194_B0769	-	hypothetical protein
767	 68.64	0	875003..875863	+	286	78061620	-	Bcep18194_B0770	-	RpiR family transcriptional regulator
768	 68.54	0	875919..876344	+	141	78061621	-	Bcep18194_B0771	-	GCN5-related N-acetyltransferase
769	 71.88	+1	876538..878205	+	555	78061622	-	Bcep18194_B0772	-	hypothetical protein
770	 70.85	+1	878380..879240	+	286	78061623	-	Bcep18194_B0773	-	PEP phosphonomutase
771	 62.55	-1	879578..879844	+	88	78061624	-	Bcep18194_B0774	-	hypothetical protein
772	 72.87	+1	879946..881121	+	391	78061625	-	Bcep18194_B0775	-	cytochrome P450-like
773	 65.75	0	881137..881463	-	108	78061626	-	Bcep18194_B0776	-	hypothetical protein
774	 70.48	0	881565..881984	-	139	78061627	-	Bcep18194_B0777	-	rhodanese-like protein
775	 70.77	+1	882096..883070	+	324	78061628	ftrA	Bcep18194_B0778	-	transcriptional activator FtrA
776	 66.50	0	883231..885570	-	779	78061629	-	Bcep18194_B0779	-	arginine decarboxylase
777	 67.45	0	885574..887106	-	510	78061630	-	Bcep18194_B0780	-	arginine:agmatin antiporter
778	 73.98	+1	887467..888615	+	382	78061631	-	Bcep18194_B0781	-	2-nitropropane dioxygenase, NPD
779	 69.35	0	888696..890150	+	484	78061632	-	Bcep18194_B0782	-	peptidase M20
780	 70.27	0	890213..891322	+	369	78061633	-	Bcep18194_B0783	-	hypothetical protein
781	 66.38	0	891319..892368	+	349	78061634	-	Bcep18194_B0784	-	TfoX-like protein
782	 67.70	0	892676..893254	+	192	78061635	-	Bcep18194_B0785	-	membrane protein, NnrU-like
783	 63.77	0	893386..894765	-	459	78061636	-	Bcep18194_B0786	-	amino acid tranporter
784	 66.95	0	895186..896241	+	351	78061637	-	Bcep18194_B0787	-	Rieske (2Fe-2S) protein
785	 63.74	0	896261..896431	+	56	78061638	-	Bcep18194_B0788	-	rubredoxin-type Fe(Cys)4 protein
786	 70.78	+1	896428..897618	+	396	78061639	-	Bcep18194_B0789	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
787	 66.77	0	897777..898718	-	313	78061640	-	Bcep18194_B0790	-	LysR family transcriptional regulator
788	 68.56	0	898946..899683	-	245	78061641	-	Bcep18194_B0791	-	hypothetical protein
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.