IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
598	 64.42	0	675508..676665	+	385	78061451	-	Bcep18194_B0601	-	amine dehydrogenase
599	 70.27	0	676673..677227	+	184	78061452	-	Bcep18194_B0602	-	hypothetical protein
600	 65.72	0	677224..677856	+	210	78061453	-	Bcep18194_B0603	-	hypothetical protein
601	 63.74	0	677896..678441	+	181	78061454	-	Bcep18194_B0604	-	amine dehydrogenase
602	 66.07	0	678438..678938	+	166	78061455	-	Bcep18194_B0605	-	cytochrome c, class I
603	 70.88	+1	678935..679480	+	181	78061456	-	Bcep18194_B0606	-	cytochrome c, class I
604	 67.40	0	679514..681019	+	501	78061457	-	Bcep18194_B0607	-	aldehyde dehydrogenase (acceptor)
605	 68.47	0	681092..681535	-	147	78061458	-	Bcep18194_B0608	-	hypothetical protein
606	 68.49	0	681657..682535	+	292	78061459	-	Bcep18194_B0609	-	LysR family transcriptional regulator
607	 63.07	-1	682592..684175	-	527	78061460	-	Bcep18194_B0610	-	isocitrate lyase
608	 64.78	0	684786..685739	+	317	78061461	-	Bcep18194_B0611	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
609	 69.14	0	685819..686748	+	309	78061462	-	Bcep18194_B0612	-	hypothetical protein
610	 67.81	0	686837..687802	+	321	78061463	-	Bcep18194_B0613	-	3-hydroxybutyryl-CoA dehydrogenase
611	 65.64	0	687815..688303	+	162	78061464	-	Bcep18194_B0614	-	thioesterase-like
612	 71.06	+1	688337..689293	+	318	78061465	-	Bcep18194_B0615	-	lipolytic protein
613	 69.09	0	689316..690512	+	398	78061466	-	Bcep18194_B0616	-	gamma-butyrobetaine,2-oxoglutarate dioxygenase
614	 64.98	0	690715..691011	-	98	78061467	-	Bcep18194_B0617	-	hypothetical protein
615	 71.43	+1	691226..692212	-	328	78061468	-	Bcep18194_B0618	-	Short-chain dehydrogenase/reductase SDR
616	 68.73	0	692379..692669	-	96	78061469	-	Bcep18194_B0619	-	hypothetical protein
617	 70.33	0	693334..694098	+	254	78061470	-	Bcep18194_B0620	-	Short-chain dehydrogenase/reductase SDR
618	 67.62	0	694140..694982	+	280	78061471	-	Bcep18194_B0621	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
619	 66.82	0	695006..696283	+	425	78061472	-	Bcep18194_B0622	-	mandelate racemase/muconate lactonizing protein
620	 65.12	0	696327..697103	+	258	78061473	-	Bcep18194_B0623	-	short chain dehydrogenase
621	 67.32	0	697116..698654	+	512	78061474	-	Bcep18194_B0624	-	ABC sugar transporter, ATPase subunit
622	 65.80	0	698671..699708	+	345	78061475	-	Bcep18194_B0625	-	ABC sugar transporter, inner membrane subunit
623	 64.44	0	699797..700738	+	313	78061476	-	Bcep18194_B0626	-	ABC sugar transporter, periplasmic ligand binding protein
624	 70.90	+1	700799..701671	+	290	78061477	-	Bcep18194_B0627	-	amidohydrolase 2
625	 66.27	0	701862..702617	+	251	78061478	-	Bcep18194_B0628	-	GntR family transcriptional regulator
626	 70.90	+1	702648..703970	-	440	78061479	-	Bcep18194_B0629	-	FAD dependent oxidoreductase
627	 63.64	0	704107..704832	+	241	78061480	-	Bcep18194_B0630	-	hypothetical protein
628	 68.04	0	704881..705606	-	241	78061481	-	Bcep18194_B0631	-	Asp/Glu racemase
629	 70.14	0	705621..707003	-	460	78061482	-	Bcep18194_B0632	-	amidohydrolase
630	 68.56	0	707091..708464	-	457	78061483	-	Bcep18194_B0633	-	xanthine/uracil transporter
631	 65.50	0	708526..709635	-	369	78061484	-	Bcep18194_B0634	-	cobalamin synthesis protein/P47K
632	 68.13	0	709632..710246	-	204	78061485	-	Bcep18194_B0635	-	phenylacrylic acid decarboxylase
633	 68.60	0	710243..711637	-	464	78061486	-	Bcep18194_B0636	-	carboxylyase-like protein
634	 63.36	0	711719..712624	-	301	78061487	-	Bcep18194_B0637	-	amidohydrolase 2
635	 63.12	-1	712661..713563	-	300	78061488	-	Bcep18194_B0638	-	amidohydrolase 2
636	 67.56	0	713806..714696	+	296	78061489	-	Bcep18194_B0639	-	LysR family transcriptional regulator
637	 69.24	0	714706..715599	-	297	78061490	-	Bcep18194_B0640	-	LysR family transcriptional regulator
638	 68.28	0	715729..716223	+	164	78061491	-	Bcep18194_B0641	-	Iron sulfer protein
639	 68.90	0	716225..718507	+	760	78061492	-	Bcep18194_B0642	-	aldehyde oxidase
640	 68.36	0	718789..719496	+	235	78061493	-	Bcep18194_B0643	-	hypothetical protein
641	 69.19	0	719493..720761	+	422	78061494	-	Bcep18194_B0644	-	diguanylate cyclase
642	 64.31	0	720847..721356	+	169	78061495	-	Bcep18194_B0645	-	OmpA/MotB family outer membrane protein
643	 65.86	0	721788..723890	+	700	78061496	-	Bcep18194_B0646	-	Rhs element Vgr protein
644	 67.10	0	723908..724366	+	152	78061497	-	Bcep18194_B0647	-	hypothetical protein
645	 60.95	-1	724363..728703	+	1446	78061498	-	Bcep18194_B0648	-	Rhs family protein
646	 49.92	-2	728720..729316	+	198	78061499	-	Bcep18194_B0649	-	hypothetical protein
647	 63.11	-1	729722..730537	-	271	78061500	-	Bcep18194_B0650	-	hypothetical protein
648	 63.42	0	731078..732277	+	399	78061501	-	Bcep18194_B0651	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
649	 65.10	0	732428..733387	+	319	78061502	-	Bcep18194_B0652	-	branched chain amino acid ABC transporter inner membrane protein
650	 65.80	0	733399..734670	+	423	78061503	livM	Bcep18194_B0653	-	leucine/isoleucine/valine transporter permease subunit
651	 66.28	0	734667..735440	+	257	78061504	livG	Bcep18194_B0654	-	leucine/isoleucine/valine transporter ATP-binding subunit
652	 67.24	0	735440..736141	+	233	78061505	-	Bcep18194_B0655	-	branched chain amino acid ABC transporter ATPase
653	 65.26	0	736224..737078	-	284	78061506	-	Bcep18194_B0656	-	LysR family transcriptional regulator
654	 61.26	-1	737211..738191	+	326	78061507	-	Bcep18194_B0657	-	hypothetical protein
655	 64.44	0	738221..739207	+	328	78061508	-	Bcep18194_B0658	-	hypothetical protein
656	 67.32	0	739221..740144	+	307	78061509	-	Bcep18194_B0659	-	hypothetical protein
657	 62.68	-1	740211..740561	+	116	78061510	-	Bcep18194_B0660	-	glyoxalase/bleomycin resistance protein/dioxygenase
658	 67.79	0	740692..741669	-	325	78061511	-	Bcep18194_B0661	-	AraC family transcriptional regulator
659	 68.80	0	741715..742464	+	249	78061512	-	Bcep18194_B0662	-	Short-chain dehydrogenase/reductase SDR
660	 65.57	0	742758..743030	-	90	78061513	-	Bcep18194_B0663	-	hypothetical protein
661	 63.62	0	743594..744676	+	360	78061514	-	Bcep18194_B0664	-	LuxR family transcriptional regulator
662	 68.43	0	744712..746013	-	433	78061515	-	Bcep18194_B0665	-	aminotransferase
663	 67.57	0	746100..746984	+	294	78061516	-	Bcep18194_B0666	-	LysR family transcriptional regulator
664	 72.34	+1	747010..748455	-	481	78061517	-	Bcep18194_B0667	-	salicylate biosynthesis isochorismate synthase
665	 67.97	0	748452..748757	-	101	78061518	-	Bcep18194_B0668	-	isochorismate-pyruvate lyase
666	 70.16	0	748754..749527	-	257	78061519	-	Bcep18194_B0669	-	thioesterase
667	 71.39	+1	749524..751176	-	550	78061520	-	Bcep18194_B0670	-	AMP-dependent synthetase and ligase
668	 66.45	0	751394..752335	+	313	78061521	-	Bcep18194_B0671	-	AraC family transcriptional regulator
669	 70.70	+1	752459..756868	+	1469	78061522	-	Bcep18194_B0672	-	non-ribosomal peptide synthetase modules
670	 69.59	0	756865..762339	+	1824	78061523	-	Bcep18194_B0673	-	non-ribosomal peptide synthetase modules
671	 71.42	+1	762336..763388	+	350	78061524	-	Bcep18194_B0674	-	thiazolinyl imide reductase
672	 71.25	+1	763385..765106	+	573	78061525	-	Bcep18194_B0675	-	ABC efflux pump, fused inner membrane and ATPase subunits
673	 74.34	+2	765103..766887	+	594	78061526	-	Bcep18194_B0676	-	ABC efflux pump, fused inner membrane and ATPase subunits
674	 67.65	0	767001..769238	+	745	78061527	-	Bcep18194_B0677	-	TonB-dependent siderophore receptor
675	 78.03	+2	769238..769501	+	87	78061528	-	Bcep18194_B0678	-	hypothetical protein
676	 73.15	+1	769503..771014	+	503	78061529	-	Bcep18194_B0679	-	hypothetical protein
677	 70.36	0	771037..772281	+	414	78061530	-	Bcep18194_B0680	-	major facilitator transporter
678	 66.95	0	772490..773563	+	357	78061531	-	Bcep18194_B0681	-	AraC family transcriptional regulator
679	 69.80	0	773579..774757	-	392	78061532	-	Bcep18194_B0682	-	Alpha/beta hydrolase
680	 67.80	0	774961..776553	+	530	78061533	-	Bcep18194_B0683	-	Beta-lactamase
681	 67.68	0	776740..778215	+	491	78061534	-	Bcep18194_B0684	-	hypothetical protein
682	 69.48	0	778389..779705	+	438	78061535	-	Bcep18194_B0685	-	major facilitator transporter
683	 67.27	0	780030..782363	+	777	78061536	-	Bcep18194_B0686	-	TonB-dependent receptor
684	 69.62	0	782389..783066	+	225	78061537	-	Bcep18194_B0687	-	TonB-like protein
685	 67.97	0	783136..784059	+	307	78061538	-	Bcep18194_B0688	-	MotA/TolQ/ExbB proton channel
686	 62.65	-1	784073..784495	+	140	78061539	-	Bcep18194_B0689	-	biopolymer transport protein ExbD/TolR
687	 65.71	0	784505..784924	+	139	78061540	-	Bcep18194_B0690	-	biopolymer transport protein ExbD/TolR
688	 69.61	0	785466..786791	+	441	78061541	-	Bcep18194_B0691	-	serine/threonine protein kinase
689	 68.10	0	786803..787432	-	209	78061542	-	Bcep18194_B0692	-	lysine exporter protein LysE/YggA
690	 67.79	0	787736..788182	-	148	78061543	-	Bcep18194_B0693	-	hypothetical protein
691	 66.39	0	788263..788628	-	121	78061544	-	Bcep18194_B0694	-	copper resistance protein CopC
692	 69.84	0	788931..789308	-	125	78061545	-	Bcep18194_B0695	-	hypothetical protein
693	 64.65	0	789410..789904	-	164	78061546	-	Bcep18194_B0696	-	hypothetical protein
694	 68.32	0	789964..790266	-	100	78061547	-	Bcep18194_B0697	-	ferredoxin
695	 70.17	0	790355..792268	-	637	78061548	-	Bcep18194_B0698	-	Fis family GAF modulated sigma54 specific transcriptional regulator
696	 66.15	0	792691..792882	+	63	78061549	-	Bcep18194_B0699	-	hypothetical protein
697	 65.28	0	793123..793410	+	95	78061550	-	Bcep18194_B0700	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.