IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
561	 65.33	0	629991..631187	+	398	78061414	-	Bcep18194_B0564	-	zinc-containing alcohol dehydrogenase superfamily protein
562	 69.01	0	631343..632365	-	340	78061415	-	Bcep18194_B0565	-	fructose-bisphosphate aldolase
563	 65.38	0	632423..632656	-	77	78061416	-	Bcep18194_B0566	-	hypothetical protein
564	 67.45	0	632834..633601	-	255	78061417	-	Bcep18194_B0567	-	hypothetical protein
565	 67.37	0	633865..635286	-	473	78061418	-	Bcep18194_B0568	-	GntR family transcriptional regulator
566	 64.26	0	635562..636974	+	470	78061419	-	Bcep18194_B0569	-	putative secreted protein
567	 66.13	0	637036..638151	-	371	78061420	-	Bcep18194_B0570	-	transcriptional regulator
568	 67.61	0	638508..639782	+	424	78061421	-	Bcep18194_B0571	-	serine hydroxymethyltransferase
569	 60.70	-1	639814..640785	+	323	78061422	-	Bcep18194_B0572	-	membrane dipeptidase
570	 64.79	0	640925..641458	+	177	78061423	-	Bcep18194_B0573	-	4-vinyl reductase, 4VR
571	 65.70	0	641535..643598	+	687	78061424	-	Bcep18194_B0574	-	NADH-flavin oxidoreductase/NADH oxidase
572	 68.85	0	643602..645527	+	641	78061425	-	Bcep18194_B0575	-	hypothetical protein
573	 69.57	0	645532..646701	+	389	78061426	-	Bcep18194_B0576	-	electron transfer flavoprotein subunit alpha
574	 70.10	0	646698..647483	+	261	78061427	-	Bcep18194_B0577	-	electron transfer flavoprotein subunit beta
575	 62.72	-1	647536..648777	+	413	78061428	-	Bcep18194_B0578	-	Rieske (2Fe-2S) protein
576	 66.06	0	648806..649954	+	382	78061429	-	Bcep18194_B0579	-	ferredoxin/oxidoreductase
577	 63.43	0	650088..650951	+	287	78061430	-	Bcep18194_B0580	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
578	 63.35	0	651131..652786	+	551	78061431	-	Bcep18194_B0581	-	amino acid transporter
579	 57.23	-2	652904..653941	-	345	78061432	-	Bcep18194_B0582	-	TPR repeat-containing protein
580	 65.70	0	654306..654923	+	205	78061433	-	Bcep18194_B0583	-	TetR family transcriptional regulator
581	 65.96	0	655094..656086	+	330	78061434	-	Bcep18194_B0584	-	hypothetical protein
582	 64.41	0	656114..656998	-	294	78061435	-	Bcep18194_B0585	-	formyltetrahydrofolate deformylase
583	 71.74	+1	657168..658094	-	308	78061436	-	Bcep18194_B0586	-	LysR family transcriptional regulator
584	 68.49	0	658337..659872	+	511	78061437	-	Bcep18194_B0587	-	sulfatase
585	 68.12	0	659918..660883	+	321	78061438	-	Bcep18194_B0588	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
586	 64.21	0	661142..662281	+	379	78061439	-	Bcep18194_B0589	-	outer membrane protein (porin)
587	 65.61	0	662669..664081	+	470	78061440	-	Bcep18194_B0590	-	cysteinyl-tRNA synthetase
588	 69.78	0	664310..665560	+	416	78061441	-	Bcep18194_B0591	-	hypothetical protein
589	 65.38	0	665619..666629	-	336	78061442	-	Bcep18194_B0592	-	phosphate transporter
590	 59.49	-2	666643..667269	-	208	78061443	-	Bcep18194_B0593	-	hypothetical protein
591	 65.82	0	667307..668128	-	273	78061444	-	Bcep18194_B0594	-	2OG-Fe(II) oxygenase
592	 64.72	0	669058..669417	-	119	78061445	-	Bcep18194_B0595	-	hypothetical protein
593	 65.95	0	669682..670935	-	417	78061446	-	Bcep18194_B0596	-	aminopeptidase Ap1
594	 66.49	0	671015..672727	-	570	78061447	-	Bcep18194_B0597	-	propeptide, peptidase M4 and M36
595	 52.44	-2	672972..673217	+	81	78061448	-	Bcep18194_B0598	-	hypothetical protein
596	 67.79	0	673230..674210	-	326	78061449	-	Bcep18194_B0599	-	transcriptional regulator
597	 66.25	0	674301..675263	-	320	78061450	-	Bcep18194_B0600	-	AraC family transcriptional regulator
598	 64.42	0	675508..676665	+	385	78061451	-	Bcep18194_B0601	-	amine dehydrogenase
599	 70.27	0	676673..677227	+	184	78061452	-	Bcep18194_B0602	-	hypothetical protein
600	 65.72	0	677224..677856	+	210	78061453	-	Bcep18194_B0603	-	hypothetical protein
601	 63.74	0	677896..678441	+	181	78061454	-	Bcep18194_B0604	-	amine dehydrogenase
602	 66.07	0	678438..678938	+	166	78061455	-	Bcep18194_B0605	-	cytochrome c, class I
603	 70.88	+1	678935..679480	+	181	78061456	-	Bcep18194_B0606	-	cytochrome c, class I
604	 67.40	0	679514..681019	+	501	78061457	-	Bcep18194_B0607	-	aldehyde dehydrogenase (acceptor)
605	 68.47	0	681092..681535	-	147	78061458	-	Bcep18194_B0608	-	hypothetical protein
606	 68.49	0	681657..682535	+	292	78061459	-	Bcep18194_B0609	-	LysR family transcriptional regulator
607	 63.07	-1	682592..684175	-	527	78061460	-	Bcep18194_B0610	-	isocitrate lyase
608	 64.78	0	684786..685739	+	317	78061461	-	Bcep18194_B0611	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
609	 69.14	0	685819..686748	+	309	78061462	-	Bcep18194_B0612	-	hypothetical protein
610	 67.81	0	686837..687802	+	321	78061463	-	Bcep18194_B0613	-	3-hydroxybutyryl-CoA dehydrogenase
611	 65.64	0	687815..688303	+	162	78061464	-	Bcep18194_B0614	-	thioesterase-like
612	 71.06	+1	688337..689293	+	318	78061465	-	Bcep18194_B0615	-	lipolytic protein
613	 69.09	0	689316..690512	+	398	78061466	-	Bcep18194_B0616	-	gamma-butyrobetaine,2-oxoglutarate dioxygenase
614	 64.98	0	690715..691011	-	98	78061467	-	Bcep18194_B0617	-	hypothetical protein
615	 71.43	+1	691226..692212	-	328	78061468	-	Bcep18194_B0618	-	Short-chain dehydrogenase/reductase SDR
616	 68.73	0	692379..692669	-	96	78061469	-	Bcep18194_B0619	-	hypothetical protein
617	 70.33	0	693334..694098	+	254	78061470	-	Bcep18194_B0620	-	Short-chain dehydrogenase/reductase SDR
618	 67.62	0	694140..694982	+	280	78061471	-	Bcep18194_B0621	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
619	 66.82	0	695006..696283	+	425	78061472	-	Bcep18194_B0622	-	mandelate racemase/muconate lactonizing protein
620	 65.12	0	696327..697103	+	258	78061473	-	Bcep18194_B0623	-	short chain dehydrogenase
621	 67.32	0	697116..698654	+	512	78061474	-	Bcep18194_B0624	-	ABC sugar transporter, ATPase subunit
622	 65.80	0	698671..699708	+	345	78061475	-	Bcep18194_B0625	-	ABC sugar transporter, inner membrane subunit
623	 64.44	0	699797..700738	+	313	78061476	-	Bcep18194_B0626	-	ABC sugar transporter, periplasmic ligand binding protein
624	 70.90	+1	700799..701671	+	290	78061477	-	Bcep18194_B0627	-	amidohydrolase 2
625	 66.27	0	701862..702617	+	251	78061478	-	Bcep18194_B0628	-	GntR family transcriptional regulator
626	 70.90	+1	702648..703970	-	440	78061479	-	Bcep18194_B0629	-	FAD dependent oxidoreductase
627	 63.64	0	704107..704832	+	241	78061480	-	Bcep18194_B0630	-	hypothetical protein
628	 68.04	0	704881..705606	-	241	78061481	-	Bcep18194_B0631	-	Asp/Glu racemase
629	 70.14	0	705621..707003	-	460	78061482	-	Bcep18194_B0632	-	amidohydrolase
630	 68.56	0	707091..708464	-	457	78061483	-	Bcep18194_B0633	-	xanthine/uracil transporter
631	 65.50	0	708526..709635	-	369	78061484	-	Bcep18194_B0634	-	cobalamin synthesis protein/P47K
632	 68.13	0	709632..710246	-	204	78061485	-	Bcep18194_B0635	-	phenylacrylic acid decarboxylase
633	 68.60	0	710243..711637	-	464	78061486	-	Bcep18194_B0636	-	carboxylyase-like protein
634	 63.36	0	711719..712624	-	301	78061487	-	Bcep18194_B0637	-	amidohydrolase 2
635	 63.12	-1	712661..713563	-	300	78061488	-	Bcep18194_B0638	-	amidohydrolase 2
636	 67.56	0	713806..714696	+	296	78061489	-	Bcep18194_B0639	-	LysR family transcriptional regulator
637	 69.24	0	714706..715599	-	297	78061490	-	Bcep18194_B0640	-	LysR family transcriptional regulator
638	 68.28	0	715729..716223	+	164	78061491	-	Bcep18194_B0641	-	Iron sulfer protein
639	 68.90	0	716225..718507	+	760	78061492	-	Bcep18194_B0642	-	aldehyde oxidase
640	 68.36	0	718789..719496	+	235	78061493	-	Bcep18194_B0643	-	hypothetical protein
641	 69.19	0	719493..720761	+	422	78061494	-	Bcep18194_B0644	-	diguanylate cyclase
642	 64.31	0	720847..721356	+	169	78061495	-	Bcep18194_B0645	-	OmpA/MotB family outer membrane protein
643	 65.86	0	721788..723890	+	700	78061496	-	Bcep18194_B0646	-	Rhs element Vgr protein
644	 67.10	0	723908..724366	+	152	78061497	-	Bcep18194_B0647	-	hypothetical protein
645	 60.95	-1	724363..728703	+	1446	78061498	-	Bcep18194_B0648	-	Rhs family protein
646	 49.92	-2	728720..729316	+	198	78061499	-	Bcep18194_B0649	-	hypothetical protein
647	 63.11	-1	729722..730537	-	271	78061500	-	Bcep18194_B0650	-	hypothetical protein
648	 63.42	0	731078..732277	+	399	78061501	-	Bcep18194_B0651	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
649	 65.10	0	732428..733387	+	319	78061502	-	Bcep18194_B0652	-	branched chain amino acid ABC transporter inner membrane protein
650	 65.80	0	733399..734670	+	423	78061503	livM	Bcep18194_B0653	-	leucine/isoleucine/valine transporter permease subunit
651	 66.28	0	734667..735440	+	257	78061504	livG	Bcep18194_B0654	-	leucine/isoleucine/valine transporter ATP-binding subunit
652	 67.24	0	735440..736141	+	233	78061505	-	Bcep18194_B0655	-	branched chain amino acid ABC transporter ATPase
653	 65.26	0	736224..737078	-	284	78061506	-	Bcep18194_B0656	-	LysR family transcriptional regulator
654	 61.26	-1	737211..738191	+	326	78061507	-	Bcep18194_B0657	-	hypothetical protein
655	 64.44	0	738221..739207	+	328	78061508	-	Bcep18194_B0658	-	hypothetical protein
656	 67.32	0	739221..740144	+	307	78061509	-	Bcep18194_B0659	-	hypothetical protein
657	 62.68	-1	740211..740561	+	116	78061510	-	Bcep18194_B0660	-	glyoxalase/bleomycin resistance protein/dioxygenase
658	 67.79	0	740692..741669	-	325	78061511	-	Bcep18194_B0661	-	AraC family transcriptional regulator
659	 68.80	0	741715..742464	+	249	78061512	-	Bcep18194_B0662	-	Short-chain dehydrogenase/reductase SDR
660	 65.57	0	742758..743030	-	90	78061513	-	Bcep18194_B0663	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.