IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
514	 62.54	-1	581768..582106	-	112	78061367	-	Bcep18194_B0517	-	hypothetical protein
515	 68.33	0	582185..583084	+	299	78061368	-	Bcep18194_B0518	-	hypothetical protein
516	 66.24	0	583292..583525	+	77	78061369	-	Bcep18194_B0519	-	hypothetical protein
517	 66.47	0	583625..584632	-	335	78061370	-	Bcep18194_B0520	-	aldo/keto reductase
518	 66.06	0	584684..585010	-	108	78061371	-	Bcep18194_B0521	-	carboxymuconolactone decarboxylase
519	 69.24	0	585143..586036	-	297	78061372	-	Bcep18194_B0522	-	LysR family transcriptional regulator
520	 68.69	0	586119..587009	-	296	78061373	-	Bcep18194_B0523	-	putative esterase
521	 71.66	+1	587107..587847	-	246	78061374	-	Bcep18194_B0524	-	Alpha/beta hydrolase
522	 69.14	0	587844..588650	-	268	78061375	-	Bcep18194_B0525	-	hypothetical protein
523	 67.32	0	588739..589509	-	256	78061376	-	Bcep18194_B0526	-	hypothetical protein
524	 68.34	0	589690..590286	+	198	78061377	-	Bcep18194_B0527	-	TetR family transcriptional regulator
525	 64.35	0	590355..590786	-	143	78061378	-	Bcep18194_B0528	-	hypothetical protein
526	 63.40	0	591074..592237	+	387	78061379	-	Bcep18194_B0529	-	Rieske (2Fe-2S) protein
527	 69.53	0	592312..594024	+	570	78061380	-	Bcep18194_B0530	-	choline dehydrogenase
528	 71.14	+1	594030..595013	+	327	78061381	-	Bcep18194_B0531	-	ferredoxin
529	 67.20	0	595044..595988	+	314	78061382	-	Bcep18194_B0532	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
530	 67.31	0	596096..596869	+	257	78061383	-	Bcep18194_B0533	-	short chain dehydrogenase
531	 67.20	0	596993..597742	-	249	78061384	-	Bcep18194_B0534	-	hypothetical protein
532	 70.63	+1	597766..599229	-	487	78061385	-	Bcep18194_B0535	-	aldehyde dehydrogenase (acceptor)
533	 68.23	0	599610..600566	+	318	78061386	-	Bcep18194_B0536	-	transcriptional regulator
534	 67.54	0	600572..600916	+	114	78061387	-	Bcep18194_B0537	-	hypothetical protein
535	 65.67	0	601042..601743	-	233	78061388	-	Bcep18194_B0538	-	Beta-lactamase-like
536	 70.25	0	601949..603370	-	473	78061389	-	Bcep18194_B0539	-	major facilitator transporter
537	 63.91	0	603531..604292	-	253	78061390	-	Bcep18194_B0540	-	ABC transporter, inner membrane subunit
538	 66.77	0	604296..605240	-	314	78061391	-	Bcep18194_B0541	-	ABC transporter, ATPase subunit
539	 61.81	-1	605347..605655	-	102	78061392	-	Bcep18194_B0542	-	hypothetical protein
540	 64.65	0	605675..605971	+	98	78061393	-	Bcep18194_B0543	-	hypothetical protein
541	 64.98	0	606589..608187	+	532	78061394	-	Bcep18194_B0544	-	hypothetical protein
542	 67.15	0	608259..609512	+	417	78061395	-	Bcep18194_B0545	-	hypothetical protein
543	 65.33	0	609586..610410	+	274	78061396	-	Bcep18194_B0546	-	OmpW family protein
544	 62.70	-1	610532..611035	+	167	78061397	-	Bcep18194_B0547	-	hypothetical protein
545	 58.53	-2	611217..611720	+	167	78061398	-	Bcep18194_B0548	-	hypothetical protein
546	 67.58	0	611956..613047	+	363	78061399	-	Bcep18194_B0549	-	hypothetical protein
547	 66.58	0	613490..614689	+	399	78061400	-	Bcep18194_B0550	-	monogalactosyldiacylglycerol synthase
548	 63.43	0	614686..615180	+	164	78061401	-	Bcep18194_B0551	-	hypothetical protein
549	 64.10	0	615194..615778	+	194	78061402	-	Bcep18194_B0552	-	protein tyrosine/serine phosphatase
550	 65.84	0	615863..617563	-	566	78061403	-	Bcep18194_B0553	-	choline dehydrogenase
551	 67.35	0	617589..619058	-	489	78061404	-	Bcep18194_B0554	-	betaine aldehyde dehydrogenase
552	 68.21	0	619091..619675	-	194	78061405	-	Bcep18194_B0555	-	transcriptional regulator BetI
553	 67.88	0	620396..621298	+	300	78061406	-	Bcep18194_B0556	-	Alpha/beta hydrolase
554	 67.19	0	621366..621935	+	189	78061407	-	Bcep18194_B0557	-	isoprenylcysteine carboxyl methyltransferase
555	 71.42	+1	621953..623236	+	427	78061408	-	Bcep18194_B0558	-	glycosyl transferase family protein
556	 67.79	0	623233..624828	+	531	78061409	-	Bcep18194_B0559	-	EmrB/QacA family drug resistance transporter
557	 67.94	0	624839..625777	+	312	78061410	-	Bcep18194_B0560	-	rhamnosyltransferase
558	 70.79	+1	625786..627675	+	629	78061411	-	Bcep18194_B0561	-	RND efflux system outer membrane lipoprotein
559	 70.53	0	627675..628865	+	396	78061412	-	Bcep18194_B0562	-	HlyD family secretion protein
560	 67.72	0	629035..629793	+	252	78061413	-	Bcep18194_B0563	-	Short-chain dehydrogenase/reductase SDR
561	 65.33	0	629991..631187	+	398	78061414	-	Bcep18194_B0564	-	zinc-containing alcohol dehydrogenase superfamily protein
562	 69.01	0	631343..632365	-	340	78061415	-	Bcep18194_B0565	-	fructose-bisphosphate aldolase
563	 65.38	0	632423..632656	-	77	78061416	-	Bcep18194_B0566	-	hypothetical protein
564	 67.45	0	632834..633601	-	255	78061417	-	Bcep18194_B0567	-	hypothetical protein
565	 67.37	0	633865..635286	-	473	78061418	-	Bcep18194_B0568	-	GntR family transcriptional regulator
566	 64.26	0	635562..636974	+	470	78061419	-	Bcep18194_B0569	-	putative secreted protein
567	 66.13	0	637036..638151	-	371	78061420	-	Bcep18194_B0570	-	transcriptional regulator
568	 67.61	0	638508..639782	+	424	78061421	-	Bcep18194_B0571	-	serine hydroxymethyltransferase
569	 60.70	-1	639814..640785	+	323	78061422	-	Bcep18194_B0572	-	membrane dipeptidase
570	 64.79	0	640925..641458	+	177	78061423	-	Bcep18194_B0573	-	4-vinyl reductase, 4VR
571	 65.70	0	641535..643598	+	687	78061424	-	Bcep18194_B0574	-	NADH-flavin oxidoreductase/NADH oxidase
572	 68.85	0	643602..645527	+	641	78061425	-	Bcep18194_B0575	-	hypothetical protein
573	 69.57	0	645532..646701	+	389	78061426	-	Bcep18194_B0576	-	electron transfer flavoprotein subunit alpha
574	 70.10	0	646698..647483	+	261	78061427	-	Bcep18194_B0577	-	electron transfer flavoprotein subunit beta
575	 62.72	-1	647536..648777	+	413	78061428	-	Bcep18194_B0578	-	Rieske (2Fe-2S) protein
576	 66.06	0	648806..649954	+	382	78061429	-	Bcep18194_B0579	-	ferredoxin/oxidoreductase
577	 63.43	0	650088..650951	+	287	78061430	-	Bcep18194_B0580	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
578	 63.35	0	651131..652786	+	551	78061431	-	Bcep18194_B0581	-	amino acid transporter
579	 57.23	-2	652904..653941	-	345	78061432	-	Bcep18194_B0582	-	TPR repeat-containing protein
580	 65.70	0	654306..654923	+	205	78061433	-	Bcep18194_B0583	-	TetR family transcriptional regulator
581	 65.96	0	655094..656086	+	330	78061434	-	Bcep18194_B0584	-	hypothetical protein
582	 64.41	0	656114..656998	-	294	78061435	-	Bcep18194_B0585	-	formyltetrahydrofolate deformylase
583	 71.74	+1	657168..658094	-	308	78061436	-	Bcep18194_B0586	-	LysR family transcriptional regulator
584	 68.49	0	658337..659872	+	511	78061437	-	Bcep18194_B0587	-	sulfatase
585	 68.12	0	659918..660883	+	321	78061438	-	Bcep18194_B0588	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
586	 64.21	0	661142..662281	+	379	78061439	-	Bcep18194_B0589	-	outer membrane protein (porin)
587	 65.61	0	662669..664081	+	470	78061440	-	Bcep18194_B0590	-	cysteinyl-tRNA synthetase
588	 69.78	0	664310..665560	+	416	78061441	-	Bcep18194_B0591	-	hypothetical protein
589	 65.38	0	665619..666629	-	336	78061442	-	Bcep18194_B0592	-	phosphate transporter
590	 59.49	-2	666643..667269	-	208	78061443	-	Bcep18194_B0593	-	hypothetical protein
591	 65.82	0	667307..668128	-	273	78061444	-	Bcep18194_B0594	-	2OG-Fe(II) oxygenase
592	 64.72	0	669058..669417	-	119	78061445	-	Bcep18194_B0595	-	hypothetical protein
593	 65.95	0	669682..670935	-	417	78061446	-	Bcep18194_B0596	-	aminopeptidase Ap1
594	 66.49	0	671015..672727	-	570	78061447	-	Bcep18194_B0597	-	propeptide, peptidase M4 and M36
595	 52.44	-2	672972..673217	+	81	78061448	-	Bcep18194_B0598	-	hypothetical protein
596	 67.79	0	673230..674210	-	326	78061449	-	Bcep18194_B0599	-	transcriptional regulator
597	 66.25	0	674301..675263	-	320	78061450	-	Bcep18194_B0600	-	AraC family transcriptional regulator
598	 64.42	0	675508..676665	+	385	78061451	-	Bcep18194_B0601	-	amine dehydrogenase
599	 70.27	0	676673..677227	+	184	78061452	-	Bcep18194_B0602	-	hypothetical protein
600	 65.72	0	677224..677856	+	210	78061453	-	Bcep18194_B0603	-	hypothetical protein
601	 63.74	0	677896..678441	+	181	78061454	-	Bcep18194_B0604	-	amine dehydrogenase
602	 66.07	0	678438..678938	+	166	78061455	-	Bcep18194_B0605	-	cytochrome c, class I
603	 70.88	+1	678935..679480	+	181	78061456	-	Bcep18194_B0606	-	cytochrome c, class I
604	 67.40	0	679514..681019	+	501	78061457	-	Bcep18194_B0607	-	aldehyde dehydrogenase (acceptor)
605	 68.47	0	681092..681535	-	147	78061458	-	Bcep18194_B0608	-	hypothetical protein
606	 68.49	0	681657..682535	+	292	78061459	-	Bcep18194_B0609	-	LysR family transcriptional regulator
607	 63.07	-1	682592..684175	-	527	78061460	-	Bcep18194_B0610	-	isocitrate lyase
608	 64.78	0	684786..685739	+	317	78061461	-	Bcep18194_B0611	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
609	 69.14	0	685819..686748	+	309	78061462	-	Bcep18194_B0612	-	hypothetical protein
610	 67.81	0	686837..687802	+	321	78061463	-	Bcep18194_B0613	-	3-hydroxybutyryl-CoA dehydrogenase
611	 65.64	0	687815..688303	+	162	78061464	-	Bcep18194_B0614	-	thioesterase-like
612	 71.06	+1	688337..689293	+	318	78061465	-	Bcep18194_B0615	-	lipolytic protein
613	 69.09	0	689316..690512	+	398	78061466	-	Bcep18194_B0616	-	gamma-butyrobetaine,2-oxoglutarate dioxygenase
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.