IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
455	 63.19	-1	513996..514943	+	315	78061308	-	Bcep18194_B0458	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
456	 64.13	0	515110..516528	-	472	78061309	-	Bcep18194_B0459	-	hypothetical protein
457	 56.43	-2	516670..517626	-	318	78061310	-	Bcep18194_B0460	-	hypothetical protein
458	 64.71	0	518174..518683	-	169	78061311	-	Bcep18194_B0461	-	membrane protein
459	 67.96	0	518747..519676	+	309	78061312	-	Bcep18194_B0462	-	LysR family transcriptional regulator
460	 70.76	+1	519722..520870	-	382	78061313	-	Bcep18194_B0463	-	glycosyl hydrolase
461	 65.56	0	520938..521207	-	89	78061314	-	Bcep18194_B0464	-	hypothetical protein
462	 63.66	0	521444..521809	+	121	78061315	-	Bcep18194_B0465	-	hypothetical protein
463	 66.96	0	521908..522597	-	229	78061316	-	Bcep18194_B0466	-	aspartyl/asparaginyl beta-hydroxylase
464	 66.67	0	522841..523185	+	114	78061317	-	Bcep18194_B0467	-	hypothetical protein
465	 66.67	0	523254..523532	+	92	78061318	-	Bcep18194_B0468	-	hypothetical protein
466	 68.75	0	523800..524327	-	175	78061319	-	Bcep18194_B0469	-	cytochrome B561
467	 60.97	-1	524517..524867	+	116	78061320	-	Bcep18194_B0470	-	hypothetical protein
468	 66.24	0	524930..526099	+	389	78061321	-	Bcep18194_B0471	-	Acyl-CoA dehydrogenase-like
469	 69.61	0	526096..527184	+	362	78061322	-	Bcep18194_B0472	-	hypothetical protein
470	 68.52	0	527232..528203	-	323	78061323	-	Bcep18194_B0473	-	NAD-dependent epimerase/dehydratase
471	 67.44	0	528232..529008	-	258	78061324	-	Bcep18194_B0474	-	hydroxypyruvate isomerase
472	 64.63	0	529089..530414	-	441	78061325	-	Bcep18194_B0475	-	major facilitator transporter
473	 69.95	0	530526..531164	-	212	78061326	-	Bcep18194_B0476	-	putative aldolase
474	 69.89	0	531161..532462	-	433	78061327	-	Bcep18194_B0477	-	Type III effector Hrp-dependent outer proteins
475	 70.48	0	532482..533372	-	296	78061328	-	Bcep18194_B0478	-	3-hydroxyisobutyrate dehydrogenase
476	 67.66	0	533443..534147	-	234	78061329	-	Bcep18194_B0479	-	GntR family transcriptional regulator
477	 68.08	0	534403..535182	-	259	78061330	-	Bcep18194_B0480	-	IclR family transcriptional regulator
478	 68.98	0	535210..536331	-	373	78061331	-	Bcep18194_B0481	-	salicylate 1-monooxygenase
479	 64.15	0	536667..537740	-	357	78061332	-	Bcep18194_B0482	-	outer membrane protein (porin)
480	 64.98	0	538018..539853	+	611	78061333	-	Bcep18194_B0483	-	arylsulfatase A like protein
481	 70.03	0	539886..540956	-	356	78061334	-	Bcep18194_B0484	-	transcriptional regulator
482	 67.75	0	541257..542642	+	461	78061335	-	Bcep18194_B0485	-	L-serine ammonia-lyase
483	 65.94	0	542659..543903	+	414	78061336	-	Bcep18194_B0486	-	sarcosine oxidase, beta subunit, heterotetrameric
484	 62.33	-1	543918..544217	+	99	78061337	-	Bcep18194_B0487	-	sarcosine oxidase, delta subunit, heterotetrameric
485	 67.30	0	544214..547225	+	1003	78061338	-	Bcep18194_B0488	-	sarcosine oxidase, alpha subunit, heterotetrameric
486	 68.56	0	547215..547847	+	210	78061339	-	Bcep18194_B0489	-	sarcosine oxidase, gamma subunit
487	 66.44	0	547844..548284	+	146	78061340	-	Bcep18194_B0490	-	dihydroneopterin aldolase
488	 60.35	-1	548658..549401	+	247	78061341	-	Bcep18194_B0491	-	hypothetical protein
489	 68.62	0	549554..550627	-	357	78061342	-	Bcep18194_B0492	-	NADH-flavin oxidoreductase/NADH oxidase
490	 67.01	0	550800..551675	+	291	78061343	-	Bcep18194_B0493	-	LysR family transcriptional regulator
491	 65.41	0	551698..552096	-	132	78061344	-	Bcep18194_B0494	-	hypothetical protein
492	 65.22	0	552118..552876	-	252	78061345	-	Bcep18194_B0495	-	lytic transglycosylase, catalytic
493	 69.92	0	553045..553812	-	255	78061346	-	Bcep18194_B0496	-	ABC proline/glycine betaine transporter, inner membrane subunit
494	 69.01	0	553809..554747	-	312	78061347	-	Bcep18194_B0497	-	ABC proline/glycine betaine transporter, ATPase subunit
495	 72.01	+1	554744..555922	-	392	78061348	-	Bcep18194_B0498	-	ABC proline/glycine betaine transporter, inner membrane subunit
496	 66.45	0	555919..556842	-	307	78061349	-	Bcep18194_B0499	-	ABC glycine betaine/choline transporter, periplasmic ligand binding protein
497	 67.20	0	557010..557939	+	309	78061350	-	Bcep18194_B0500	-	2-hydroxyacid dehydrogenase
498	 67.07	0	558036..559034	-	332	78061351	-	Bcep18194_B0501	-	zinc-containing alcohol dehydrogenase superfamily protein
499	 65.08	0	559120..559560	-	146	78061352	-	Bcep18194_B0502	-	DoxX family membrane protein
500	 65.95	0	559635..560756	-	373	78061353	-	Bcep18194_B0503	-	NADH-flavin oxidoreductase/NADH oxidase
501	 66.01	0	560899..561807	+	302	78061354	-	Bcep18194_B0504	-	LysR family transcriptional regulator
502	 71.37	+1	561944..563899	-	651	78061355	-	Bcep18194_B0505	-	x-prolyl-dipeptidyl aminopeptidase
503	 67.40	0	564492..565304	+	270	78061356	-	Bcep18194_B0506	-	hypothetical protein
504	 68.69	0	565344..566627	-	427	78061357	-	Bcep18194_B0507	-	LolC/E family lipoprotein releasing system, transmembrane protein
505	 67.50	0	566897..572905	+	2002	78061358	-	Bcep18194_B0508	-	Alpha-2-macroglobulin-like large extracellular alpha-helical protein
506	 69.19	0	572960..575374	+	804	78061359	-	Bcep18194_B0509	-	penicillin-binding protein 1C
507	 59.71	-2	575441..576274	+	277	78061360	-	Bcep18194_B0510	-	TPR repeat-containing protein
508	 59.43	-2	576722..577108	-	128	78061361	-	Bcep18194_B0511	-	hypothetical protein
509	 60.62	-1	577069..577944	-	291	78061362	-	Bcep18194_B0512	-	hypothetical protein
510	 64.20	0	578234..578923	+	229	78061363	-	Bcep18194_B0513	-	Alpha/beta hydrolase
511	 56.17	-2	579050..579859	+	269	78061364	-	Bcep18194_B0514	-	hypothetical protein
512	 53.64	-2	580207..580536	+	109	78061365	-	Bcep18194_B0515	-	hypothetical protein
513	 55.06	-2	580572..581657	-	361	78061366	-	Bcep18194_B0516	-	hypothetical protein
514	 62.54	-1	581768..582106	-	112	78061367	-	Bcep18194_B0517	-	hypothetical protein
515	 68.33	0	582185..583084	+	299	78061368	-	Bcep18194_B0518	-	hypothetical protein
516	 66.24	0	583292..583525	+	77	78061369	-	Bcep18194_B0519	-	hypothetical protein
517	 66.47	0	583625..584632	-	335	78061370	-	Bcep18194_B0520	-	aldo/keto reductase
518	 66.06	0	584684..585010	-	108	78061371	-	Bcep18194_B0521	-	carboxymuconolactone decarboxylase
519	 69.24	0	585143..586036	-	297	78061372	-	Bcep18194_B0522	-	LysR family transcriptional regulator
520	 68.69	0	586119..587009	-	296	78061373	-	Bcep18194_B0523	-	putative esterase
521	 71.66	+1	587107..587847	-	246	78061374	-	Bcep18194_B0524	-	Alpha/beta hydrolase
522	 69.14	0	587844..588650	-	268	78061375	-	Bcep18194_B0525	-	hypothetical protein
523	 67.32	0	588739..589509	-	256	78061376	-	Bcep18194_B0526	-	hypothetical protein
524	 68.34	0	589690..590286	+	198	78061377	-	Bcep18194_B0527	-	TetR family transcriptional regulator
525	 64.35	0	590355..590786	-	143	78061378	-	Bcep18194_B0528	-	hypothetical protein
526	 63.40	0	591074..592237	+	387	78061379	-	Bcep18194_B0529	-	Rieske (2Fe-2S) protein
527	 69.53	0	592312..594024	+	570	78061380	-	Bcep18194_B0530	-	choline dehydrogenase
528	 71.14	+1	594030..595013	+	327	78061381	-	Bcep18194_B0531	-	ferredoxin
529	 67.20	0	595044..595988	+	314	78061382	-	Bcep18194_B0532	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
530	 67.31	0	596096..596869	+	257	78061383	-	Bcep18194_B0533	-	short chain dehydrogenase
531	 67.20	0	596993..597742	-	249	78061384	-	Bcep18194_B0534	-	hypothetical protein
532	 70.63	+1	597766..599229	-	487	78061385	-	Bcep18194_B0535	-	aldehyde dehydrogenase (acceptor)
533	 68.23	0	599610..600566	+	318	78061386	-	Bcep18194_B0536	-	transcriptional regulator
534	 67.54	0	600572..600916	+	114	78061387	-	Bcep18194_B0537	-	hypothetical protein
535	 65.67	0	601042..601743	-	233	78061388	-	Bcep18194_B0538	-	Beta-lactamase-like
536	 70.25	0	601949..603370	-	473	78061389	-	Bcep18194_B0539	-	major facilitator transporter
537	 63.91	0	603531..604292	-	253	78061390	-	Bcep18194_B0540	-	ABC transporter, inner membrane subunit
538	 66.77	0	604296..605240	-	314	78061391	-	Bcep18194_B0541	-	ABC transporter, ATPase subunit
539	 61.81	-1	605347..605655	-	102	78061392	-	Bcep18194_B0542	-	hypothetical protein
540	 64.65	0	605675..605971	+	98	78061393	-	Bcep18194_B0543	-	hypothetical protein
541	 64.98	0	606589..608187	+	532	78061394	-	Bcep18194_B0544	-	hypothetical protein
542	 67.15	0	608259..609512	+	417	78061395	-	Bcep18194_B0545	-	hypothetical protein
543	 65.33	0	609586..610410	+	274	78061396	-	Bcep18194_B0546	-	OmpW family protein
544	 62.70	-1	610532..611035	+	167	78061397	-	Bcep18194_B0547	-	hypothetical protein
545	 58.53	-2	611217..611720	+	167	78061398	-	Bcep18194_B0548	-	hypothetical protein
546	 67.58	0	611956..613047	+	363	78061399	-	Bcep18194_B0549	-	hypothetical protein
547	 66.58	0	613490..614689	+	399	78061400	-	Bcep18194_B0550	-	monogalactosyldiacylglycerol synthase
548	 63.43	0	614686..615180	+	164	78061401	-	Bcep18194_B0551	-	hypothetical protein
549	 64.10	0	615194..615778	+	194	78061402	-	Bcep18194_B0552	-	protein tyrosine/serine phosphatase
550	 65.84	0	615863..617563	-	566	78061403	-	Bcep18194_B0553	-	choline dehydrogenase
551	 67.35	0	617589..619058	-	489	78061404	-	Bcep18194_B0554	-	betaine aldehyde dehydrogenase
552	 68.21	0	619091..619675	-	194	78061405	-	Bcep18194_B0555	-	transcriptional regulator BetI
553	 67.88	0	620396..621298	+	300	78061406	-	Bcep18194_B0556	-	Alpha/beta hydrolase
554	 67.19	0	621366..621935	+	189	78061407	-	Bcep18194_B0557	-	isoprenylcysteine carboxyl methyltransferase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.