IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
408	 73.76	+1	449064..449867	-	267	78061261	-	Bcep18194_B0409	-	cytochrome c, class I
409	 68.44	0	449809..450879	-	356	78061262	-	Bcep18194_B0410	-	ABC transporter, periplasmic ligand binding protein
410	 68.57	0	450876..451874	-	332	78061263	-	Bcep18194_B0411	-	hypothetical protein
411	 64.17	0	451974..452933	+	319	78061264	-	Bcep18194_B0412	-	LysR family transcriptional regulator
412	 66.92	0	452967..454169	-	400	78061265	-	Bcep18194_B0413	-	Bcr/CflA subfamily drug resistance transporter
413	 67.85	0	454660..456855	-	731	78061266	-	Bcep18194_B0414	-	TonB-dependent siderophore receptor
414	 66.22	0	457272..457718	+	148	78061267	-	Bcep18194_B0415	-	hypothetical protein
415	 67.49	0	457745..458839	-	364	78061268	-	Bcep18194_B0416	-	outer membrane protein (porin)
416	 69.12	0	458934..460277	-	447	78061269	-	Bcep18194_B0417	-	major facilitator transporter
417	 66.38	0	460433..461494	-	353	78061270	-	Bcep18194_B0418	-	Rieske (2Fe-2S) protein
418	 68.84	0	461543..462508	-	321	78061271	-	Bcep18194_B0419	-	ferredoxin/oxidoreductase FAD/NAD(P)-binding
419	 66.31	0	462505..463626	-	373	78061272	-	Bcep18194_B0420	-	Rieske (2Fe-2S) protein
420	 66.26	0	463784..464272	+	162	78061273	-	Bcep18194_B0421	-	MarR family transcriptional regulator
421	 70.01	0	464337..465083	-	248	78061274	-	Bcep18194_B0422	-	TetR family transcriptional regulator
422	 64.34	0	465191..466435	+	414	78061275	-	Bcep18194_B0423	-	isovaleryl-CoA dehydrogenase
423	 67.04	0	466467..468074	+	535	78061276	-	Bcep18194_B0424	-	propionyl-CoA carboxylase
424	 69.72	0	468094..468879	+	261	78061277	-	Bcep18194_B0425	-	enoyl-CoA hydratase
425	 69.82	0	468925..470922	+	665	78061278	-	Bcep18194_B0426	-	3-methylcrotonoyl-CoA carboxylase, alpha subunit
426	 71.03	+1	471185..471436	+	83	78061279	-	Bcep18194_B0427	-	hypothetical protein
427	 66.62	0	471479..473593	+	704	78061280	-	Bcep18194_B0428	-	phosphoesterase
428	 55.94	-2	474698..475396	-	232	78061281	-	Bcep18194_B0429	-	hypothetical protein
429	 65.76	0	475496..476818	-	440	78061282	-	Bcep18194_B0430	-	hypothetical protein
430	 69.86	0	476845..477126	+	93	78061283	-	Bcep18194_B0431	-	hypothetical protein
431	 64.65	0	477263..478405	+	380	78061284	-	Bcep18194_B0432	-	hypothetical protein
432	 67.81	0	479123..479998	+	291	78061285	-	Bcep18194_B0433	-	diguanylate phosphodiesterase
433	 71.46	+1	480092..480508	+	138	78061286	-	Bcep18194_B0434	-	hypothetical protein
434	 69.15	0	480607..482580	-	657	78061287	-	Bcep18194_B0435	-	FkbM family methyltransferase
435	 64.20	0	482605..483741	-	378	78061288	-	Bcep18194_B0436	-	hypothetical protein
436	 60.43	-1	483769..484233	-	154	78061289	-	Bcep18194_B0437	-	hypothetical protein
437	 64.24	0	484268..485422	-	384	78061290	-	Bcep18194_B0438	-	hypothetical protein
438	 65.36	0	485437..486582	-	381	78061291	-	Bcep18194_B0439	-	hypothetical protein
439	 70.59	+1	486984..487646	-	220	78061292	-	Bcep18194_B0440	-	OmpA/MotB family outer membrane protein
440	 64.61	0	487771..496371	-	2866	78061293	-	Bcep18194_B0441	-	outer membrane protein, haemagluttinin-like
441	 54.55	-2	496813..497241	+	142	78061294	-	Bcep18194_B0442	-	hypothetical protein
442	 64.59	0	497599..498513	-	304	78061295	-	Bcep18194_B0443	-	hypothetical protein
443	 66.21	0	498597..498815	-	72	78061296	-	Bcep18194_B0444	-	hypothetical protein
444	 59.15	-2	500012..500317	-	101	78061297	-	Bcep18194_B0447	-	hypothetical protein
445	 71.10	+1	500597..501385	+	262	78061298	-	Bcep18194_B0448	-	GCN5-related N-acetyltransferase
446	 66.85	0	501676..503829	+	717	78061299	-	Bcep18194_B0449	-	potassium-translocating P-type ATPase, B subunit
447	 69.96	0	503894..504592	+	232	78061300	-	Bcep18194_B0450	-	two component transcriptional regulator
448	 69.27	0	504601..505254	-	217	78061301	-	Bcep18194_B0451	-	lytic transglycosylase, catalytic
449	 73.66	+1	505370..506728	-	452	78061302	-	Bcep18194_B0452	-	hypothetical protein
450	 70.43	0	506725..510126	-	1133	78061303	-	Bcep18194_B0453	-	membrane protein-like
451	 61.04	-1	510264..510512	-	82	78061304	-	Bcep18194_B0454	-	hypothetical protein
452	 65.56	0	510732..511901	+	389	78061305	-	Bcep18194_B0455	-	ABC glycine betaine/L-proline transporter, ATPase subunit
453	 64.99	0	511894..512790	+	298	78061306	-	Bcep18194_B0456	-	ABC glycine betaine/L-proline transporter, inner membrane subunit
454	 67.57	0	512899..513897	+	332	78061307	-	Bcep18194_B0457	-	transcriptional regulator
455	 63.19	-1	513996..514943	+	315	78061308	-	Bcep18194_B0458	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
456	 64.13	0	515110..516528	-	472	78061309	-	Bcep18194_B0459	-	hypothetical protein
457	 56.43	-2	516670..517626	-	318	78061310	-	Bcep18194_B0460	-	hypothetical protein
458	 64.71	0	518174..518683	-	169	78061311	-	Bcep18194_B0461	-	membrane protein
459	 67.96	0	518747..519676	+	309	78061312	-	Bcep18194_B0462	-	LysR family transcriptional regulator
460	 70.76	+1	519722..520870	-	382	78061313	-	Bcep18194_B0463	-	glycosyl hydrolase
461	 65.56	0	520938..521207	-	89	78061314	-	Bcep18194_B0464	-	hypothetical protein
462	 63.66	0	521444..521809	+	121	78061315	-	Bcep18194_B0465	-	hypothetical protein
463	 66.96	0	521908..522597	-	229	78061316	-	Bcep18194_B0466	-	aspartyl/asparaginyl beta-hydroxylase
464	 66.67	0	522841..523185	+	114	78061317	-	Bcep18194_B0467	-	hypothetical protein
465	 66.67	0	523254..523532	+	92	78061318	-	Bcep18194_B0468	-	hypothetical protein
466	 68.75	0	523800..524327	-	175	78061319	-	Bcep18194_B0469	-	cytochrome B561
467	 60.97	-1	524517..524867	+	116	78061320	-	Bcep18194_B0470	-	hypothetical protein
468	 66.24	0	524930..526099	+	389	78061321	-	Bcep18194_B0471	-	Acyl-CoA dehydrogenase-like
469	 69.61	0	526096..527184	+	362	78061322	-	Bcep18194_B0472	-	hypothetical protein
470	 68.52	0	527232..528203	-	323	78061323	-	Bcep18194_B0473	-	NAD-dependent epimerase/dehydratase
471	 67.44	0	528232..529008	-	258	78061324	-	Bcep18194_B0474	-	hydroxypyruvate isomerase
472	 64.63	0	529089..530414	-	441	78061325	-	Bcep18194_B0475	-	major facilitator transporter
473	 69.95	0	530526..531164	-	212	78061326	-	Bcep18194_B0476	-	putative aldolase
474	 69.89	0	531161..532462	-	433	78061327	-	Bcep18194_B0477	-	Type III effector Hrp-dependent outer proteins
475	 70.48	0	532482..533372	-	296	78061328	-	Bcep18194_B0478	-	3-hydroxyisobutyrate dehydrogenase
476	 67.66	0	533443..534147	-	234	78061329	-	Bcep18194_B0479	-	GntR family transcriptional regulator
477	 68.08	0	534403..535182	-	259	78061330	-	Bcep18194_B0480	-	IclR family transcriptional regulator
478	 68.98	0	535210..536331	-	373	78061331	-	Bcep18194_B0481	-	salicylate 1-monooxygenase
479	 64.15	0	536667..537740	-	357	78061332	-	Bcep18194_B0482	-	outer membrane protein (porin)
480	 64.98	0	538018..539853	+	611	78061333	-	Bcep18194_B0483	-	arylsulfatase A like protein
481	 70.03	0	539886..540956	-	356	78061334	-	Bcep18194_B0484	-	transcriptional regulator
482	 67.75	0	541257..542642	+	461	78061335	-	Bcep18194_B0485	-	L-serine ammonia-lyase
483	 65.94	0	542659..543903	+	414	78061336	-	Bcep18194_B0486	-	sarcosine oxidase, beta subunit, heterotetrameric
484	 62.33	-1	543918..544217	+	99	78061337	-	Bcep18194_B0487	-	sarcosine oxidase, delta subunit, heterotetrameric
485	 67.30	0	544214..547225	+	1003	78061338	-	Bcep18194_B0488	-	sarcosine oxidase, alpha subunit, heterotetrameric
486	 68.56	0	547215..547847	+	210	78061339	-	Bcep18194_B0489	-	sarcosine oxidase, gamma subunit
487	 66.44	0	547844..548284	+	146	78061340	-	Bcep18194_B0490	-	dihydroneopterin aldolase
488	 60.35	-1	548658..549401	+	247	78061341	-	Bcep18194_B0491	-	hypothetical protein
489	 68.62	0	549554..550627	-	357	78061342	-	Bcep18194_B0492	-	NADH-flavin oxidoreductase/NADH oxidase
490	 67.01	0	550800..551675	+	291	78061343	-	Bcep18194_B0493	-	LysR family transcriptional regulator
491	 65.41	0	551698..552096	-	132	78061344	-	Bcep18194_B0494	-	hypothetical protein
492	 65.22	0	552118..552876	-	252	78061345	-	Bcep18194_B0495	-	lytic transglycosylase, catalytic
493	 69.92	0	553045..553812	-	255	78061346	-	Bcep18194_B0496	-	ABC proline/glycine betaine transporter, inner membrane subunit
494	 69.01	0	553809..554747	-	312	78061347	-	Bcep18194_B0497	-	ABC proline/glycine betaine transporter, ATPase subunit
495	 72.01	+1	554744..555922	-	392	78061348	-	Bcep18194_B0498	-	ABC proline/glycine betaine transporter, inner membrane subunit
496	 66.45	0	555919..556842	-	307	78061349	-	Bcep18194_B0499	-	ABC glycine betaine/choline transporter, periplasmic ligand binding protein
497	 67.20	0	557010..557939	+	309	78061350	-	Bcep18194_B0500	-	2-hydroxyacid dehydrogenase
498	 67.07	0	558036..559034	-	332	78061351	-	Bcep18194_B0501	-	zinc-containing alcohol dehydrogenase superfamily protein
499	 65.08	0	559120..559560	-	146	78061352	-	Bcep18194_B0502	-	DoxX family membrane protein
500	 65.95	0	559635..560756	-	373	78061353	-	Bcep18194_B0503	-	NADH-flavin oxidoreductase/NADH oxidase
501	 66.01	0	560899..561807	+	302	78061354	-	Bcep18194_B0504	-	LysR family transcriptional regulator
502	 71.37	+1	561944..563899	-	651	78061355	-	Bcep18194_B0505	-	x-prolyl-dipeptidyl aminopeptidase
503	 67.40	0	564492..565304	+	270	78061356	-	Bcep18194_B0506	-	hypothetical protein
504	 68.69	0	565344..566627	-	427	78061357	-	Bcep18194_B0507	-	LolC/E family lipoprotein releasing system, transmembrane protein
505	 67.50	0	566897..572905	+	2002	78061358	-	Bcep18194_B0508	-	Alpha-2-macroglobulin-like large extracellular alpha-helical protein
506	 69.19	0	572960..575374	+	804	78061359	-	Bcep18194_B0509	-	penicillin-binding protein 1C
507	 59.71	-2	575441..576274	+	277	78061360	-	Bcep18194_B0510	-	TPR repeat-containing protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.