IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
386	 69.63	0	424850..425761	-	303	78061239	-	Bcep18194_B0387	-	LysR family transcriptional regulator
387	 69.33	0	425856..427205	+	449	78061240	-	Bcep18194_B0388	-	xanthine/uracil/vitamin C transporter
388	 66.94	0	427252..428352	+	366	78061241	-	Bcep18194_B0389	-	adenosine deaminase
389	 64.68	0	428383..428835	-	150	78061242	-	Bcep18194_B0390	-	hypothetical protein
390	 68.80	0	429017..430936	+	639	78061243	-	Bcep18194_B0391	-	hypothetical protein
391	 69.49	0	430983..433211	-	742	78061244	-	Bcep18194_B0392	-	peptidoglycan glycosyltransferase
392	 56.22	-2	433449..434453	-	334	78061245	-	Bcep18194_B0393	-	hypothetical protein
393	 60.39	-1	434823..435683	+	286	78061246	-	Bcep18194_B0394	-	LysR family transcriptional regulator
394	 72.56	+1	435684..437177	-	497	78061247	-	Bcep18194_B0395	-	GntR family transcriptional regulator
395	 68.39	0	437301..437939	+	212	78061248	-	Bcep18194_B0396	-	negative transcriptional regulator
396	 66.67	0	437995..438576	-	193	78061249	-	Bcep18194_B0397	-	hypothetical protein
397	 68.29	0	438804..439544	+	246	78061250	-	Bcep18194_B0398	-	two component transcriptional regulator
398	 71.58	+1	439541..440863	+	440	78061251	-	Bcep18194_B0399	-	periplasmic sensor signal transduction histidine kinase
399	 68.63	0	440945..441556	-	203	78061252	-	Bcep18194_B0400	-	Alpha/beta hydrolase
400	 69.93	0	441619..442353	-	244	78061253	-	Bcep18194_B0401	-	metallophosphoesterase
401	 66.48	0	442469..443002	-	177	78061254	-	Bcep18194_B0402	-	GCN5-related N-acetyltransferase
402	 69.50	0	443015..443650	-	211	78061255	-	Bcep18194_B0403	-	lysine exporter protein LysE/YggA
403	 68.84	0	443954..445147	+	397	78061256	-	Bcep18194_B0404	-	outer membrane protein (porin)
404	 69.91	0	445248..445679	+	143	78061257	-	Bcep18194_B0405	-	hypothetical protein
405	 51.14	-2	445822..446085	-	87	78061258	-	Bcep18194_B0406	-	hypothetical protein
406	 65.63	0	446142..448064	+	640	78061259	-	Bcep18194_B0407	-	hypothetical protein
407	 70.91	+1	448126..449067	-	313	78061260	-	Bcep18194_B0408	-	cytochrome c, class I
408	 73.76	+1	449064..449867	-	267	78061261	-	Bcep18194_B0409	-	cytochrome c, class I
409	 68.44	0	449809..450879	-	356	78061262	-	Bcep18194_B0410	-	ABC transporter, periplasmic ligand binding protein
410	 68.57	0	450876..451874	-	332	78061263	-	Bcep18194_B0411	-	hypothetical protein
411	 64.17	0	451974..452933	+	319	78061264	-	Bcep18194_B0412	-	LysR family transcriptional regulator
412	 66.92	0	452967..454169	-	400	78061265	-	Bcep18194_B0413	-	Bcr/CflA subfamily drug resistance transporter
413	 67.85	0	454660..456855	-	731	78061266	-	Bcep18194_B0414	-	TonB-dependent siderophore receptor
414	 66.22	0	457272..457718	+	148	78061267	-	Bcep18194_B0415	-	hypothetical protein
415	 67.49	0	457745..458839	-	364	78061268	-	Bcep18194_B0416	-	outer membrane protein (porin)
416	 69.12	0	458934..460277	-	447	78061269	-	Bcep18194_B0417	-	major facilitator transporter
417	 66.38	0	460433..461494	-	353	78061270	-	Bcep18194_B0418	-	Rieske (2Fe-2S) protein
418	 68.84	0	461543..462508	-	321	78061271	-	Bcep18194_B0419	-	ferredoxin/oxidoreductase FAD/NAD(P)-binding
419	 66.31	0	462505..463626	-	373	78061272	-	Bcep18194_B0420	-	Rieske (2Fe-2S) protein
420	 66.26	0	463784..464272	+	162	78061273	-	Bcep18194_B0421	-	MarR family transcriptional regulator
421	 70.01	0	464337..465083	-	248	78061274	-	Bcep18194_B0422	-	TetR family transcriptional regulator
422	 64.34	0	465191..466435	+	414	78061275	-	Bcep18194_B0423	-	isovaleryl-CoA dehydrogenase
423	 67.04	0	466467..468074	+	535	78061276	-	Bcep18194_B0424	-	propionyl-CoA carboxylase
424	 69.72	0	468094..468879	+	261	78061277	-	Bcep18194_B0425	-	enoyl-CoA hydratase
425	 69.82	0	468925..470922	+	665	78061278	-	Bcep18194_B0426	-	3-methylcrotonoyl-CoA carboxylase, alpha subunit
426	 71.03	+1	471185..471436	+	83	78061279	-	Bcep18194_B0427	-	hypothetical protein
427	 66.62	0	471479..473593	+	704	78061280	-	Bcep18194_B0428	-	phosphoesterase
428	 55.94	-2	474698..475396	-	232	78061281	-	Bcep18194_B0429	-	hypothetical protein
429	 65.76	0	475496..476818	-	440	78061282	-	Bcep18194_B0430	-	hypothetical protein
430	 69.86	0	476845..477126	+	93	78061283	-	Bcep18194_B0431	-	hypothetical protein
431	 64.65	0	477263..478405	+	380	78061284	-	Bcep18194_B0432	-	hypothetical protein
432	 67.81	0	479123..479998	+	291	78061285	-	Bcep18194_B0433	-	diguanylate phosphodiesterase
433	 71.46	+1	480092..480508	+	138	78061286	-	Bcep18194_B0434	-	hypothetical protein
434	 69.15	0	480607..482580	-	657	78061287	-	Bcep18194_B0435	-	FkbM family methyltransferase
435	 64.20	0	482605..483741	-	378	78061288	-	Bcep18194_B0436	-	hypothetical protein
436	 60.43	-1	483769..484233	-	154	78061289	-	Bcep18194_B0437	-	hypothetical protein
437	 64.24	0	484268..485422	-	384	78061290	-	Bcep18194_B0438	-	hypothetical protein
438	 65.36	0	485437..486582	-	381	78061291	-	Bcep18194_B0439	-	hypothetical protein
439	 70.59	+1	486984..487646	-	220	78061292	-	Bcep18194_B0440	-	OmpA/MotB family outer membrane protein
440	 64.61	0	487771..496371	-	2866	78061293	-	Bcep18194_B0441	-	outer membrane protein, haemagluttinin-like
441	 54.55	-2	496813..497241	+	142	78061294	-	Bcep18194_B0442	-	hypothetical protein
442	 64.59	0	497599..498513	-	304	78061295	-	Bcep18194_B0443	-	hypothetical protein
443	 66.21	0	498597..498815	-	72	78061296	-	Bcep18194_B0444	-	hypothetical protein
444	 59.15	-2	500012..500317	-	101	78061297	-	Bcep18194_B0447	-	hypothetical protein
445	 71.10	+1	500597..501385	+	262	78061298	-	Bcep18194_B0448	-	GCN5-related N-acetyltransferase
446	 66.85	0	501676..503829	+	717	78061299	-	Bcep18194_B0449	-	potassium-translocating P-type ATPase, B subunit
447	 69.96	0	503894..504592	+	232	78061300	-	Bcep18194_B0450	-	two component transcriptional regulator
448	 69.27	0	504601..505254	-	217	78061301	-	Bcep18194_B0451	-	lytic transglycosylase, catalytic
449	 73.66	+1	505370..506728	-	452	78061302	-	Bcep18194_B0452	-	hypothetical protein
450	 70.43	0	506725..510126	-	1133	78061303	-	Bcep18194_B0453	-	membrane protein-like
451	 61.04	-1	510264..510512	-	82	78061304	-	Bcep18194_B0454	-	hypothetical protein
452	 65.56	0	510732..511901	+	389	78061305	-	Bcep18194_B0455	-	ABC glycine betaine/L-proline transporter, ATPase subunit
453	 64.99	0	511894..512790	+	298	78061306	-	Bcep18194_B0456	-	ABC glycine betaine/L-proline transporter, inner membrane subunit
454	 67.57	0	512899..513897	+	332	78061307	-	Bcep18194_B0457	-	transcriptional regulator
455	 63.19	-1	513996..514943	+	315	78061308	-	Bcep18194_B0458	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
456	 64.13	0	515110..516528	-	472	78061309	-	Bcep18194_B0459	-	hypothetical protein
457	 56.43	-2	516670..517626	-	318	78061310	-	Bcep18194_B0460	-	hypothetical protein
458	 64.71	0	518174..518683	-	169	78061311	-	Bcep18194_B0461	-	membrane protein
459	 67.96	0	518747..519676	+	309	78061312	-	Bcep18194_B0462	-	LysR family transcriptional regulator
460	 70.76	+1	519722..520870	-	382	78061313	-	Bcep18194_B0463	-	glycosyl hydrolase
461	 65.56	0	520938..521207	-	89	78061314	-	Bcep18194_B0464	-	hypothetical protein
462	 63.66	0	521444..521809	+	121	78061315	-	Bcep18194_B0465	-	hypothetical protein
463	 66.96	0	521908..522597	-	229	78061316	-	Bcep18194_B0466	-	aspartyl/asparaginyl beta-hydroxylase
464	 66.67	0	522841..523185	+	114	78061317	-	Bcep18194_B0467	-	hypothetical protein
465	 66.67	0	523254..523532	+	92	78061318	-	Bcep18194_B0468	-	hypothetical protein
466	 68.75	0	523800..524327	-	175	78061319	-	Bcep18194_B0469	-	cytochrome B561
467	 60.97	-1	524517..524867	+	116	78061320	-	Bcep18194_B0470	-	hypothetical protein
468	 66.24	0	524930..526099	+	389	78061321	-	Bcep18194_B0471	-	Acyl-CoA dehydrogenase-like
469	 69.61	0	526096..527184	+	362	78061322	-	Bcep18194_B0472	-	hypothetical protein
470	 68.52	0	527232..528203	-	323	78061323	-	Bcep18194_B0473	-	NAD-dependent epimerase/dehydratase
471	 67.44	0	528232..529008	-	258	78061324	-	Bcep18194_B0474	-	hydroxypyruvate isomerase
472	 64.63	0	529089..530414	-	441	78061325	-	Bcep18194_B0475	-	major facilitator transporter
473	 69.95	0	530526..531164	-	212	78061326	-	Bcep18194_B0476	-	putative aldolase
474	 69.89	0	531161..532462	-	433	78061327	-	Bcep18194_B0477	-	Type III effector Hrp-dependent outer proteins
475	 70.48	0	532482..533372	-	296	78061328	-	Bcep18194_B0478	-	3-hydroxyisobutyrate dehydrogenase
476	 67.66	0	533443..534147	-	234	78061329	-	Bcep18194_B0479	-	GntR family transcriptional regulator
477	 68.08	0	534403..535182	-	259	78061330	-	Bcep18194_B0480	-	IclR family transcriptional regulator
478	 68.98	0	535210..536331	-	373	78061331	-	Bcep18194_B0481	-	salicylate 1-monooxygenase
479	 64.15	0	536667..537740	-	357	78061332	-	Bcep18194_B0482	-	outer membrane protein (porin)
480	 64.98	0	538018..539853	+	611	78061333	-	Bcep18194_B0483	-	arylsulfatase A like protein
481	 70.03	0	539886..540956	-	356	78061334	-	Bcep18194_B0484	-	transcriptional regulator
482	 67.75	0	541257..542642	+	461	78061335	-	Bcep18194_B0485	-	L-serine ammonia-lyase
483	 65.94	0	542659..543903	+	414	78061336	-	Bcep18194_B0486	-	sarcosine oxidase, beta subunit, heterotetrameric
484	 62.33	-1	543918..544217	+	99	78061337	-	Bcep18194_B0487	-	sarcosine oxidase, delta subunit, heterotetrameric
485	 67.30	0	544214..547225	+	1003	78061338	-	Bcep18194_B0488	-	sarcosine oxidase, alpha subunit, heterotetrameric
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.