IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.02	0	38..1057	+	339	78060854	-	Bcep18194_B0001	-	Phage integrase
2	 63.87	0	1194..2375	-	393	78060855	-	Bcep18194_B0002	-	hypothetical protein
3	 65.13	0	4197..5564	+	455	78060856	-	Bcep18194_B0003	-	hypothetical protein
4	 62.52	-1	5655..6716	-	353	78060857	-	Bcep18194_B0004	-	ParB family protein
5	 60.48	-1	6740..7402	-	220	78060858	-	Bcep18194_B0005	-	cobyrinic acid a,c-diamide synthase
6	 61.39	-1	8493..8852	+	119	78060859	-	Bcep18194_B0006	-	arsenate reductase
7	 68.02	0	8940..9161	-	73	78060860	-	Bcep18194_B0007	-	hypothetical protein
8	 65.00	0	9139..9738	-	199	78060861	-	Bcep18194_B0008	-	RNA polymerase sigma factor
9	 66.13	0	10106..10660	+	184	78060862	-	Bcep18194_B0009	-	NADPH-dependent FMN reductase
10	 68.28	0	10713..13007	-	764	78060863	-	Bcep18194_B0010	-	periplasmic sensor hybrid histidine kinase
11	 59.06	-2	13080..13421	-	113	78060864	-	Bcep18194_B0011	-	hypothetical protein
12	 57.99	-2	13442..13810	+	122	78060865	-	Bcep18194_B0012	-	response regulator receiver protein
13	 65.57	0	13794..14429	+	211	78060866	-	Bcep18194_B0013	-	CheC, inhibitor of MCP methylation
14	 67.41	0	14426..15364	+	312	78060867	-	Bcep18194_B0014	-	diguanylate cyclase with PAS/PAC sensor
15	 70.06	0	15434..16318	-	294	78060868	-	Bcep18194_B0015	-	esterase
16	 67.57	0	16494..16826	+	110	78060869	-	Bcep18194_B0016	-	hypothetical protein
17	 68.20	0	17086..17934	+	282	78060870	-	Bcep18194_B0017	-	squalene/phytoene synthase
18	 71.85	+1	17948..19201	+	417	78060871	-	Bcep18194_B0018	-	amine oxidase
19	 67.53	0	19213..21186	+	657	78060872	-	Bcep18194_B0019	-	Terpene synthase/squalene cyclase
20	 74.47	+2	21190..21894	+	234	78060873	-	Bcep18194_B0020	-	hypothetical protein
21	 68.48	0	22020..23009	-	329	78060874	-	Bcep18194_B0021	-	VacJ-like lipoprotein
22	 69.40	0	23002..25635	-	877	78060875	-	Bcep18194_B0022	-	RND efflux transporter
23	 65.16	0	25959..26555	+	198	78060876	-	Bcep18194_B0023	-	toluene tolerance protein
24	 65.73	0	26636..27274	-	212	78060877	-	Bcep18194_B0024	-	TetR family transcriptional regulator
25	 68.90	0	27419..28939	+	506	78060878	-	Bcep18194_B0025	-	EmrB/QacA family drug resistance transporter
26	 69.15	0	28998..29642	-	214	78060879	-	Bcep18194_B0026	-	two component LuxR family transcriptional regulator
27	 69.34	0	29672..31057	-	461	78060880	-	Bcep18194_B0027	-	periplasmic sensor signal transduction histidine kinase
28	 67.74	0	31219..32802	-	527	78060881	-	Bcep18194_B0028	-	diguanylate cyclase
29	 68.64	0	33311..35485	-	724	78060882	-	Bcep18194_B0029	-	malate synthase G
30	 70.12	0	35529..35933	-	134	78060883	-	Bcep18194_B0030	-	hypothetical protein
31	 70.93	+1	35954..37174	-	406	78060884	glcF	Bcep18194_B0031	-	glycolate oxidase iron-sulfur subunit
32	 73.26	+1	37199..38275	-	358	78060885	glcE	Bcep18194_B0032	-	glycolate oxidase FAD binding subunit
33	 69.13	0	38275..39774	-	499	78060886	-	Bcep18194_B0033	-	glycolate oxidase subunit GlcD
34	 64.85	0	39994..40764	+	256	78060887	-	Bcep18194_B0034	-	DNA-binding transcriptional regulator GlcC
35	 65.28	0	40978..41481	+	167	78060888	-	Bcep18194_B0035	-	hypothetical protein
36	 56.89	-2	41587..42609	-	340	78060889	-	Bcep18194_B0036	-	hypothetical protein
37	 66.36	0	42966..43607	-	213	78060890	-	Bcep18194_B0037	-	GntR family transcriptional regulator
38	 63.60	0	43727..44215	+	162	78060891	-	Bcep18194_B0038	-	OsmC-like protein
39	 65.75	0	44232..44888	+	218	78060892	-	Bcep18194_B0039	-	glutathione S-transferase-like protein
40	 70.24	0	44992..45942	-	316	78060893	-	Bcep18194_B0040	-	LysR family transcriptional regulator
41	 68.26	0	46057..47808	+	583	78060894	-	Bcep18194_B0041	-	dihydroxy-acid dehydratase
42	 68.82	0	47912..48841	+	309	78060895	-	Bcep18194_B0042	-	2-dehydro-3-deoxy-L-arabinonate dehydratase
43	 70.65	+1	48889..49818	+	309	78060896	-	Bcep18194_B0043	-	L-arabinose 1-dehydrogenase (NADP+)
44	 67.55	0	49893..50906	+	337	78060897	-	Bcep18194_B0044	-	ABC sugar transporter, periplasmic ligand binding protein
45	 68.24	0	50741..53608	-	955	78060898	-	Bcep18194_B0045	-	hypothetical protein
46	 69.73	0	50927..52495	+	522	78060899	araG	Bcep18194_B0046	-	L-arabinose transporter ATP-binding protein
47	 66.67	0	52529..53548	+	339	78060900	araH	Bcep18194_B0047	-	L-arabinose transporter permease protein
48	 70.43	0	53594..54496	+	300	78060901	-	Bcep18194_B0048	-	L-arabinonolactonase
49	 69.05	0	54669..55172	+	167	78060902	-	Bcep18194_B0049	-	MarR family transcriptional regulator
50	 66.19	0	55393..56223	+	276	78060903	-	Bcep18194_B0050	-	p-hydroxycinnamoyl CoA hydratase/lyase
51	 70.53	+1	56261..57709	+	482	78060904	-	Bcep18194_B0051	-	aldehyde dehydrogenase
52	 68.46	0	57721..59619	+	632	78060905	-	Bcep18194_B0052	-	feruloyl-CoA synthase
53	 72.72	+1	59823..61028	+	401	78060906	-	Bcep18194_B0053	-	putative 3-hydroxyphenylpropionic transporter MhpT
54	 70.06	0	61092..62240	+	382	78060907	-	Bcep18194_B0054	-	outer membrane protein (porin)
55	 68.76	0	62269..63990	+	573	78060908	-	Bcep18194_B0055	-	feruloyl esterase
56	 62.47	-1	64062..64538	-	158	78060909	-	Bcep18194_B0056	-	AsnC family transcriptional regulator
57	 72.26	+1	64697..65929	+	410	78060910	-	Bcep18194_B0057	-	diaminopropionate ammonia-lyase
58	 67.60	0	65989..67164	+	391	78060911	-	Bcep18194_B0058	-	peptidase M20D, amidohydrolase
59	 66.84	0	67569..68129	+	186	78060912	-	Bcep18194_B0059	-	hypothetical protein
60	 67.99	0	68217..69575	-	452	78060913	-	Bcep18194_B0060	-	aminotransferase
61	 65.29	0	69872..70381	-	169	78060914	-	Bcep18194_B0061	-	GCN5-related N-acetyltransferase
62	 69.65	0	70517..71152	-	211	78060915	-	Bcep18194_B0062	-	transcriptional regulator
63	 68.36	0	71449..71802	+	117	78060916	-	Bcep18194_B0063	-	endoribonuclease L-PSP
64	 70.02	0	71834..73084	+	416	78060917	-	Bcep18194_B0064	-	FAD dependent oxidoreductase
65	 67.24	0	73191..74582	+	463	78060918	-	Bcep18194_B0065	-	amino acid transporter
66	 68.51	0	74809..75459	-	216	78060919	-	Bcep18194_B0066	-	outer membrane lipoprotein
67	 69.92	0	75924..77123	+	399	78060920	-	Bcep18194_B0067	-	cytosine deaminase
68	 70.80	+1	77208..78392	+	394	78060921	-	Bcep18194_B0068	-	cytosine deaminase
69	 65.19	0	78461..78934	+	157	78060922	-	Bcep18194_B0069	-	hypothetical protein
70	 68.41	0	79048..79908	-	286	78060923	-	Bcep18194_B0070	-	LysR family transcriptional regulator
71	 69.93	0	80094..80768	+	224	78060924	-	Bcep18194_B0071	-	ankyrin repeat-containing protein
72	 61.25	-1	80796..81275	-	159	78060925	-	Bcep18194_B0072	-	XRE family transcriptional regulator
73	 65.92	0	81765..82568	+	267	78060926	-	Bcep18194_B0073	-	ABC amino acid transporter, periplasmic ligand binding protein
74	 67.49	0	82600..83448	+	282	78060927	-	Bcep18194_B0074	-	phytanoyl-CoA dioxygenase
75	 66.80	0	83532..84269	-	245	78060928	-	Bcep18194_B0075	-	histidine utilization repressor
76	 62.80	-1	84300..84842	-	180	78060929	-	Bcep18194_B0076	-	XRE family transcriptional regulator
77	 66.67	0	84977..85759	+	260	78060930	-	Bcep18194_B0077	-	hypothetical protein
78	 68.56	0	85810..86706	+	298	78060931	-	Bcep18194_B0078	-	dihydrodipicolinate synthase
79	 69.49	0	86703..87410	+	235	78060932	-	Bcep18194_B0079	-	MOSC family protein
80	 69.67	0	87432..88196	-	254	78060933	-	Bcep18194_B0080	-	short chain dehydrogenase
81	 67.94	0	88578..89285	+	235	78060934	-	Bcep18194_B0081	-	hypothetical protein
82	 66.90	0	89375..90643	-	422	78060935	-	Bcep18194_B0082	-	hypothetical protein
83	 62.41	-1	90643..91065	-	140	78060936	-	Bcep18194_B0083	-	hypothetical protein
84	 67.93	0	91095..91805	-	236	78060937	-	Bcep18194_B0084	-	hypothetical protein
85	 66.36	0	92050..93366	+	438	78060938	-	Bcep18194_B0085	-	triacylglycerol lipase
86	 68.08	0	93560..94690	+	376	78060939	-	Bcep18194_B0086	-	phospho-2-dehydro-3-deoxyheptonate aldolase
87	 67.90	0	94707..95681	+	324	78060940	-	Bcep18194_B0087	-	hypothetical protein
88	 65.73	0	95856..96284	+	142	78060941	-	Bcep18194_B0088	-	hypothetical protein
89	 70.16	0	96340..96855	-	171	78060942	-	Bcep18194_B0089	-	OsmC-like protein
90	 67.33	0	96881..97636	-	251	78060943	-	Bcep18194_B0090	-	NAD-dependent epimerase/dehydratase
91	 66.38	0	97842..98903	-	353	78060944	-	Bcep18194_B0091	-	LysR family transcriptional regulator
92	 65.19	0	98966..99370	-	134	78060945	-	Bcep18194_B0092	-	hypothetical protein
93	 62.92	-1	99447..99926	-	159	78060946	-	Bcep18194_B0093	-	alkylhydroperoxidase AhpD core
94	 67.01	0	100133..101017	-	294	78060947	-	Bcep18194_B0094	-	sigma-24 (FecI-like)
95	 68.16	0	101014..101814	-	266	78060948	-	Bcep18194_B0095	-	diaminopimelate epimerase
96	 67.47	0	102140..103630	+	496	78060949	-	Bcep18194_B0096	-	Sodium/alanine symporter
97	 66.38	0	104056..106134	+	692	78060950	-	Bcep18194_B0097	-	carbon starvation protein CstA
98	 65.70	0	106147..106353	+	68	78060951	-	Bcep18194_B0098	-	hypothetical protein
99	 65.22	0	106548..107168	+	206	78060952	-	Bcep18194_B0099	-	hemolysin HylII family protein
100	 72.28	+1	107228..108634	-	468	78060953	-	Bcep18194_B0100	-	major facilitator transporter
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.