IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
297	 68.34	0	320956..321552	-	198	78061150	-	Bcep18194_B0298	-	TetR family transcriptional regulator
298	 67.36	0	321678..322109	+	143	78061151	-	Bcep18194_B0299	-	hypothetical protein
299	 69.14	0	322175..323065	-	296	78061152	-	Bcep18194_B0300	-	LysR family transcriptional regulator
300	 63.11	-1	323165..323614	+	149	78061153	-	Bcep18194_B0301	-	transmembrane protein
301	 67.27	0	323965..326118	+	717	78061154	-	Bcep18194_B0302	-	phosphoesterase
302	 70.67	+1	326115..326714	+	199	78061155	-	Bcep18194_B0303	-	hypothetical protein
303	 66.90	0	326795..327646	-	283	78061156	-	Bcep18194_B0304	-	Alpha/beta hydrolase
304	 66.39	0	327917..328282	-	121	78061157	-	Bcep18194_B0305	-	hypothetical protein
305	 68.21	0	328269..329630	-	453	78061158	-	Bcep18194_B0306	-	two component, sigma54 specific, Fis family transcriptional regulator
306	 70.22	0	329620..331503	-	627	78061159	-	Bcep18194_B0307	-	periplasmic sensor signal transduction histidine kinase
307	 66.01	0	331631..332995	-	454	78061160	-	Bcep18194_B0308	-	citrate carrier protein
308	 64.62	0	333418..334248	+	276	78061161	-	Bcep18194_B0309	-	NLPA lipoprotein
309	 67.94	0	334259..335671	+	470	78061162	-	Bcep18194_B0310	-	flavin-dependent oxidoreductase
310	 71.26	+1	335690..336886	+	398	78061163	-	Bcep18194_B0311	-	ABC metal ion transporter, ATPase subunit
311	 69.10	0	336879..337535	+	218	78061164	-	Bcep18194_B0312	-	ABC metal ion transporter, inner membrane subunit
312	 67.14	0	337590..338432	+	280	78061165	-	Bcep18194_B0313	-	hypothetical protein
313	 71.29	+1	338429..339640	+	403	78061166	-	Bcep18194_B0314	-	Acyl-CoA dehydrogenase-like
314	 66.67	0	339657..340478	-	273	78061167	-	Bcep18194_B0315	-	hypothetical protein
315	 67.53	0	340629..341900	+	423	78061168	-	Bcep18194_B0316	-	cobalamin synthesis protein/P47K
316	 71.19	+1	341929..342879	+	316	78061169	-	Bcep18194_B0317	-	putative GTP cyclohydrolase
317	 64.77	0	342873..343451	+	192	78061170	-	Bcep18194_B0318	-	6-pyruvoyl-tetrahydropterin synthase-like
318	 65.24	0	343451..344011	+	186	78061171	-	Bcep18194_B0319	-	carbonic anhydrase
319	 69.86	0	344015..345391	+	458	78061172	-	Bcep18194_B0320	-	dihydroorotase
320	 61.29	-1	345388..345852	-	154	78061173	-	Bcep18194_B0321	-	AsnC family transcriptional regulator
321	 66.67	0	346007..346636	+	209	78061174	-	Bcep18194_B0322	-	lysine exporter protein LysE/YggA
322	 68.93	0	346735..348504	-	589	78061175	-	Bcep18194_B0323	-	YadA-like haemagluttinin
323	 71.26	+1	348892..349740	-	282	78061176	-	Bcep18194_B0324	-	XRE family transcriptional regulator
324	 67.81	0	349936..350898	+	320	78061177	-	Bcep18194_B0325	-	uncharacterized membrane-anchored protein
325	 66.39	0	350895..351620	+	241	78061178	-	Bcep18194_B0326	-	peptidase M50
326	 67.25	0	351699..353078	-	459	78061179	-	Bcep18194_B0327	-	D-galactonate transporter
327	 72.12	+1	353326..354903	+	525	78061180	-	Bcep18194_B0328	-	2,5-dioxopentanoate dehydrogenase (NAD+)
328	 65.05	0	355050..355421	-	123	78061181	-	Bcep18194_B0329	-	PilT protein-like
329	 65.66	0	355418..355615	-	65	78061182	-	Bcep18194_B0330	-	hypothetical protein
330	 67.03	0	355897..356451	+	184	78061183	-	Bcep18194_B0331	-	hypothetical protein
331	 65.46	0	356565..357479	-	304	78061184	-	Bcep18194_B0332	-	5-dehydro-4-deoxyglucarate dehydratase
332	 68.73	0	357709..359262	+	517	78061185	-	Bcep18194_B0333	-	galactarate dehydratase
333	 67.53	0	359369..359944	+	191	78061186	-	Bcep18194_B0334	-	hypothetical protein
334	 67.54	0	360024..360479	+	151	78061187	-	Bcep18194_B0335	-	RbsD or FucU transport associated protein
335	 64.16	0	360673..361110	+	145	78061188	-	Bcep18194_B0336	-	DoxX family membrane protein
336	 66.74	0	361268..362575	-	435	78061189	-	Bcep18194_B0337	-	major facilitator transporter
337	 73.19	+1	362779..363054	+	91	78061190	-	Bcep18194_B0338	-	hypothetical protein
338	 66.82	0	363000..364286	-	428	78061191	-	Bcep18194_B0339	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
339	 64.58	0	364362..364649	-	95	78061192	-	Bcep18194_B0340	-	hypothetical protein
340	 66.29	0	364808..365602	+	264	78061193	-	Bcep18194_B0341	-	AraC family transcriptional regulator
341	 65.91	0	365681..365944	-	87	78061194	-	Bcep18194_B0342	-	hypothetical protein
342	 67.93	0	366233..368125	-	630	78061195	-	Bcep18194_B0343	-	4-hydroxyphenylpyruvate dioxygenase
343	 65.79	0	368383..368838	+	151	78061196	-	Bcep18194_B0344	-	3-dehydroquinate dehydratase
344	 70.41	0	368835..369689	+	284	78061197	aroE	Bcep18194_B0345	-	shikimate 5-dehydrogenase
345	 66.00	0	369723..371075	+	450	78061198	-	Bcep18194_B0346	-	major facilitator transporter
346	 68.38	0	371176..372285	-	369	78061199	-	Bcep18194_B0347	-	2-aminoethylphosphonate--pyruvate transaminase
347	 64.00	0	372545..373633	+	362	78061200	-	Bcep18194_B0348	-	thiamine ABC transporter periplasmic binding protein
348	 69.93	0	373668..374771	+	367	78061201	-	Bcep18194_B0349	-	ABC transporter, ATPase subunit
349	 67.86	0	374749..375669	+	306	78061202	-	Bcep18194_B0350	-	ABC transporter, inner membrane subunit
350	 69.22	0	375659..376519	+	286	78061203	-	Bcep18194_B0351	-	ABC transporter, inner membrane subunit
351	 68.20	0	376516..377823	+	435	78061204	-	Bcep18194_B0352	-	Type I phosphodiesterase/nucleotide pyrophosphatase
352	 66.05	0	377820..379274	+	484	78061205	-	Bcep18194_B0353	-	aldehyde dehydrogenase
353	 65.76	0	379279..379830	+	183	78061206	-	Bcep18194_B0354	-	HD phosphohydrolase-like
354	 65.89	0	386220..387644	+	474	78061207	-	Bcep18194_B0355	-	major facilitator transporter
355	 63.77	0	387920..388783	-	287	78061208	-	Bcep18194_B0356	-	hypothetical protein
356	 64.78	0	389087..390679	-	530	78061209	-	Bcep18194_B0357	-	phosphate transporter
357	 68.88	0	390855..391442	-	195	78061210	-	Bcep18194_B0358	-	phosphoglycerate/bisphosphoglycerate mutase
358	 64.76	0	391663..391872	+	69	78061211	-	Bcep18194_B0359	-	hypothetical protein
359	 66.25	0	391886..392608	+	240	78061212	-	Bcep18194_B0360	-	hypothetical protein
360	 63.78	0	392631..393599	-	322	78061213	-	Bcep18194_B0361	-	LysR family transcriptional regulator
361	 65.75	0	393667..395961	+	764	78061214	-	Bcep18194_B0362	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
362	 66.21	0	395958..396392	+	144	78061215	-	Bcep18194_B0363	-	hypothetical protein
363	 65.99	0	396487..396927	+	146	78061216	-	Bcep18194_B0364	-	hypothetical protein
364	 66.44	0	396681..398006	-	441	78061217	-	Bcep18194_B0365	-	major facilitator transporter
365	 67.92	0	398061..399017	-	318	78061218	-	Bcep18194_B0366	-	agmatinase
366	 68.85	0	399151..400068	+	305	78061219	-	Bcep18194_B0367	-	LysR family transcriptional regulator
367	 69.03	0	400199..400663	-	154	78061220	-	Bcep18194_B0368	-	AsnC family transcriptional regulator
368	 70.02	0	400798..401424	+	208	78061221	-	Bcep18194_B0369	-	lysine exporter protein LysE/YggA
369	 71.24	+1	401673..403289	+	538	78061222	-	Bcep18194_B0370	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
370	 64.94	0	403365..405041	+	558	78061223	-	Bcep18194_B0371	-	peptidase S10, serine carboxypeptidase
371	 67.37	0	405116..405964	-	282	78061224	nadE	Bcep18194_B0372	-	NAD synthetase
372	 71.98	+1	406206..407183	-	325	78061225	-	Bcep18194_B0373	-	hypothetical protein
373	 64.52	0	407268..407453	-	61	78061226	-	Bcep18194_B0374	-	hypothetical protein
374	 70.09	0	407662..408420	+	252	78061227	-	Bcep18194_B0375	-	DeoR family transcriptional regulator
375	 68.56	0	408526..410319	+	597	78061228	-	Bcep18194_B0376	-	phospholipase D/transphosphatidylase
376	 64.30	0	410395..411069	-	224	78061229	-	Bcep18194_B0377	-	TetR family transcriptional regulator
377	 71.00	+1	411186..412454	-	422	78061230	-	Bcep18194_B0378	-	FAD dependent oxidoreductase
378	 66.41	0	412600..414180	-	526	78061231	-	Bcep18194_B0379	-	amino acid transporter
379	 67.13	0	414815..416326	+	503	78061232	-	Bcep18194_B0380	-	aldehyde dehydrogenase
380	 66.79	0	416432..418879	-	815	78061233	-	Bcep18194_B0381	-	MscS mechanosensitive ion channel
381	 66.24	0	419334..420752	+	472	78061234	-	Bcep18194_B0382	-	major facilitator transporter
382	 63.17	-1	420882..421196	-	104	78061235	-	Bcep18194_B0383	-	hypothetical protein
383	 68.13	0	421710..422459	+	249	78061236	-	Bcep18194_B0384	-	hypothetical protein
384	 64.60	0	422620..423732	+	370	78061237	-	Bcep18194_B0385	-	outer membrane protein (porin)
385	 68.99	0	423722..424795	+	357	78061238	-	Bcep18194_B0386	-	inosine/uridine-preferring nucleoside hydrolase
386	 69.63	0	424850..425761	-	303	78061239	-	Bcep18194_B0387	-	LysR family transcriptional regulator
387	 69.33	0	425856..427205	+	449	78061240	-	Bcep18194_B0388	-	xanthine/uracil/vitamin C transporter
388	 66.94	0	427252..428352	+	366	78061241	-	Bcep18194_B0389	-	adenosine deaminase
389	 64.68	0	428383..428835	-	150	78061242	-	Bcep18194_B0390	-	hypothetical protein
390	 68.80	0	429017..430936	+	639	78061243	-	Bcep18194_B0391	-	hypothetical protein
391	 69.49	0	430983..433211	-	742	78061244	-	Bcep18194_B0392	-	peptidoglycan glycosyltransferase
392	 56.22	-2	433449..434453	-	334	78061245	-	Bcep18194_B0393	-	hypothetical protein
393	 60.39	-1	434823..435683	+	286	78061246	-	Bcep18194_B0394	-	LysR family transcriptional regulator
394	 72.56	+1	435684..437177	-	497	78061247	-	Bcep18194_B0395	-	GntR family transcriptional regulator
395	 68.39	0	437301..437939	+	212	78061248	-	Bcep18194_B0396	-	negative transcriptional regulator
396	 66.67	0	437995..438576	-	193	78061249	-	Bcep18194_B0397	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.