IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2950	 67.75	0	3342122..3342949	-	275	78063803	-	Bcep18194_B2956	-	Alpha/beta hydrolase
2951	 65.10	0	3342986..3343177	-	63	78063804	-	Bcep18194_B2957	-	4-oxalocrotonate tautomerase
2952	 69.58	0	3343206..3343994	-	262	78063805	-	Bcep18194_B2958	-	4-oxalocrotonate decarboxylase
2953	 67.62	0	3343991..3345037	-	348	78063806	-	Bcep18194_B2959	-	4-hydroxy-2-ketovalerate aldolase
2954	 68.95	0	3345078..3345998	-	306	78063807	-	Bcep18194_B2960	-	acetaldehyde dehydrogenase
2955	 68.45	0	3346039..3346821	-	260	78063808	-	Bcep18194_B2961	-	4-oxalocrotonate decarboxylase
2956	 69.97	0	3346850..3348454	-	534	78063809	-	Bcep18194_B2962	-	betaine-aldehyde dehydrogenase
2957	 74.22	+2	3348477..3348926	-	149	78063810	-	Bcep18194_B2963	-	hypothetical protein
2958	 65.29	0	3348948..3349892	-	314	78063811	-	Bcep18194_B2964	-	catechol 2,3-dioxygenase
2959	 71.99	+1	3349910..3350266	-	118	78063812	-	Bcep18194_B2965	-	ferredoxin
2960	 68.26	0	3350268..3351332	-	354	78063813	-	Bcep18194_B2966	-	oxidoreductase FAD/NAD(P)-binding
2961	 68.07	0	3351359..3351715	-	118	78063814	-	Bcep18194_B2967	-	phenol hydroxylase region
2962	 62.35	-1	3351795..3353345	-	516	78063815	-	Bcep18194_B2968	-	methane/phenol/toluene hydroxylase
2963	 60.74	-1	3353384..3353653	-	89	78063816	-	Bcep18194_B2969	-	monooxygenase component MmoB/DmpM
2964	 68.37	0	3353689..3354684	-	331	78063817	-	Bcep18194_B2970	-	methane/phenol/toluene hydroxylase
2965	 65.37	0	3354701..3354931	-	76	78063818	-	Bcep18194_B2971	-	phenol hydroxylase subunit
2966	 69.51	0	3355218..3356906	+	562	78063819	-	Bcep18194_B2972	-	sigma-54 dependent trancsriptional regulator
2967	 67.99	0	3356908..3357663	+	251	78063820	-	Bcep18194_B2973	-	GntR family transcriptional regulator
2968	 66.79	0	3357688..3358512	-	274	78063821	-	Bcep18194_B2974	-	ABC phosphate/phosphonate transporter, periplasmic ligand binding protein
2969	 65.89	0	3358814..3359839	+	341	78063822	-	Bcep18194_B2975	-	Fatty acid desaturase
2970	 67.42	0	3359904..3361226	+	440	78063823	-	Bcep18194_B2976	-	benzoate membrane transport protein
2971	 54.91	-2	3361594..3362214	-	206	78063824	-	Bcep18194_B2977	-	hypothetical protein
2972	 58.88	-2	3362218..3362538	-	106	78063825	-	Bcep18194_B2978	-	hypothetical protein
2973	 69.48	0	3363016..3363903	-	295	78063826	-	Bcep18194_B2980	-	NmrA-like protein
2974	 69.28	0	3364257..3365174	-	305	78063827	-	Bcep18194_B2981	-	AraC family transcriptional regulator
2975	 69.49	0	3365213..3365566	+	117	78063828	-	Bcep18194_B2982	-	hypothetical protein
2976	 66.14	0	3365606..3366559	-	317	78063829	-	Bcep18194_B2983	-	LysR family transcriptional regulator
2977	 68.65	0	3366660..3368018	+	452	78063830	-	Bcep18194_B2984	-	NADH dehydrogenase, FAD-containing subunit
2978	 63.91	0	3368345..3368779	+	144	78063831	-	Bcep18194_B2985	-	hypothetical protein
2979	 67.04	0	3368959..3370578	+	539	78063832	-	Bcep18194_B2986	-	histidine acid phosphatase
2980	 64.46	0	3370602..3371282	-	226	78063833	-	Bcep18194_B2987	-	metal-dependent hydrolase
2981	 63.73	0	3371319..3372338	-	339	78063834	-	Bcep18194_B2988	-	sterol desaturase-like
2982	 68.00	0	3372433..3373479	+	348	78063835	-	Bcep18194_B2989	-	AraC family transcriptional regulator
2983	 64.71	0	3373554..3373859	+	101	78063836	-	Bcep18194_B2990	-	hypothetical protein
2984	 63.97	0	3373895..3374191	-	98	78063837	-	Bcep18194_B2991	-	hypothetical protein
2985	 65.97	0	3374684..3376252	+	522	78063838	-	Bcep18194_B2992	-	diguanylate phosphodiesterase
2986	 57.07	-2	3376398..3376772	-	124	78063839	-	Bcep18194_B2993	-	hypothetical protein
2987	 64.86	0	3376876..3377871	+	331	78063840	-	Bcep18194_B2994	-	LysR family transcriptional regulator
2988	 63.10	-1	3378165..3379118	-	317	78063841	-	Bcep18194_B2995	-	hypothetical protein
2989	 57.68	-2	3379447..3379713	-	88	78063842	-	Bcep18194_B2996	-	hypothetical protein
2990	 57.59	-2	3379749..3381389	-	546	78063843	-	Bcep18194_B2997	-	hypothetical protein
2991	 55.96	-2	3381403..3383448	-	681	78063844	-	Bcep18194_B2998	-	phospholipase D/transphosphatidylase
2992	 58.29	-2	3383488..3386220	-	910	78063845	-	Bcep18194_B2999	-	Rhs element Vgr protein
2993	 65.72	0	3386417..3386944	+	175	78063846	-	Bcep18194_B3000	-	hypothetical protein
2994	 61.96	-1	3387074..3387583	-	169	78063847	-	Bcep18194_B3001	-	hypothetical protein
2995	 67.67	0	3387717..3390098	+	793	78063848	-	Bcep18194_B3002	-	DNA polymerase II
2996	 65.41	0	3390189..3391304	+	371	78063849	-	Bcep18194_B3003	-	hypothetical protein
2997	 68.21	0	3391580..3391903	+	107	78063850	-	Bcep18194_B3004	-	hypothetical protein
2998	 65.36	0	3392013..3393389	-	458	78063851	-	Bcep18194_B3005	-	hypothetical protein
2999	 70.45	0	3393456..3394169	-	237	78063852	-	Bcep18194_B3006	-	hypothetical protein
3000	 72.21	+1	3394600..3395826	+	408	78063853	-	Bcep18194_B3007	-	amino acid aldolase or racemase-like
3001	 69.99	0	3395901..3397313	+	470	78063854	-	Bcep18194_B3008	-	FAD-linked oxidoreductase
3002	 72.38	+1	3397310..3398500	+	396	78063855	-	Bcep18194_B3009	-	major facilitator transporter
3003	 69.01	0	3398637..3399833	+	398	78063856	-	Bcep18194_B3010	-	outer membrane protein (porin)
3004	 67.25	0	3399934..3400953	+	339	78063857	-	Bcep18194_B3011	-	AraC family transcriptional regulator
3005	 69.41	0	3400986..3402263	-	425	78063858	-	Bcep18194_B3012	-	allantoate amidohydrolase
3006	 69.34	0	3402260..3403645	-	461	78063859	-	Bcep18194_B3013	-	amidohydrolase
3007	 68.13	0	3403745..3404635	+	296	78063860	-	Bcep18194_B3014	-	LysR family transcriptional regulator
3008	 69.41	0	3404897..3405988	+	363	78063861	-	Bcep18194_B3015	-	hypothetical protein
3009	 68.60	0	3406001..3407653	+	550	78063862	-	Bcep18194_B3016	-	urocanate hydratase
3010	 69.92	0	3407690..3409012	+	440	78063863	-	Bcep18194_B3017	-	major facilitator transporter
3011	 70.89	+1	3409030..3410664	+	544	78063864	-	Bcep18194_B3018	-	phenylalanine/histidine ammonia-lyase
3012	 65.58	0	3410833..3411933	+	366	78063865	-	Bcep18194_B3019	-	outer membrane protein (porin)
3013	 68.58	0	3412054..3413151	+	365	78063866	-	Bcep18194_B3020	-	outer membrane protein (porin)
3014	 66.52	0	3413197..3413901	-	234	78063867	-	Bcep18194_B3021	-	GntR family transcriptional regulator
3015	 68.80	0	3414085..3415305	+	406	78063868	-	Bcep18194_B3022	-	aminotransferase, class V
3016	 67.29	0	3415464..3416738	+	424	78063869	-	Bcep18194_B3023	-	major facilitator transporter
3017	 71.11	+1	3416785..3417549	+	254	78063870	-	Bcep18194_B3024	-	2-keto-4-pentenoate hydratase-like
3018	 68.21	0	3417586..3420702	+	1038	78063871	-	Bcep18194_B3025	-	D-lactate dehydrogenase (cytochrome)
3019	 69.60	0	3420791..3421165	-	124	78063872	-	Bcep18194_B3026	-	transport-associated protein
3020	 64.49	0	3421192..3422250	-	352	78063873	-	Bcep18194_B3027	-	outer membrane protein (porin)
3021	 67.56	0	3422412..3423758	-	448	78063874	-	Bcep18194_B3028	-	hypothetical protein
3022	 68.00	0	3423755..3425101	-	448	78063875	-	Bcep18194_B3029	-	major facilitator transporter
3023	 70.17	0	3425098..3426210	-	370	78063876	-	Bcep18194_B3030	-	L-carnitine dehydratase/bile acid-inducible protein F
3024	 68.21	0	3426374..3427348	+	324	78063877	-	Bcep18194_B3031	-	LysR family transcriptional regulator
3025	 67.11	0	3427385..3428287	-	300	78063878	-	Bcep18194_B3032	-	putative DNA-binding transcriptional regulator
3026	 66.67	0	3428416..3428856	+	146	78063879	-	Bcep18194_B3033	-	hypothetical protein
3027	 67.33	0	3428888..3429793	-	301	78063880	-	Bcep18194_B3034	-	LysR family transcriptional regulator
3028	 67.07	0	3429870..3431114	-	414	78063881	-	Bcep18194_B3035	-	Acyl-CoA dehydrogenase
3029	 68.51	0	3431148..3431906	-	252	78063882	-	Bcep18194_B3036	-	Short-chain dehydrogenase/reductase SDR
3030	 66.41	0	3431914..3432678	-	254	78063883	-	Bcep18194_B3037	-	short chain dehydrogenase
3031	 67.93	0	3432721..3433752	-	343	78063884	-	Bcep18194_B3038	-	aminoglycoside phosphotransferase
3032	 68.59	0	3433772..3434446	-	224	78063885	-	Bcep18194_B3039	-	phosphoglycerate/bisphosphoglycerate mutase
3033	 60.77	-1	3434954..3435292	+	112	78063886	-	Bcep18194_B3040	-	hypothetical protein
3034	 64.65	0	3435396..3435842	+	148	78063887	-	Bcep18194_B3041	-	phenylacetic acid degradation-related protein
3035	 66.43	0	3435961..3436389	-	142	78063888	-	Bcep18194_B3042	-	hypothetical protein
3036	 69.00	0	3436446..3437429	-	327	78063889	-	Bcep18194_B3043	-	LysR family transcriptional regulator
3037	 67.30	0	3437661..3438770	-	369	78063890	-	Bcep18194_B3044	-	zinc-containing alcohol dehydrogenase superfamily protein
3038	 69.02	0	3438848..3439741	+	297	78063891	-	Bcep18194_B3045	-	LysR family transcriptional regulator
3039	 71.22	+1	3439785..3442553	-	922	78063892	-	Bcep18194_B3046	-	ATP-dependent transcription regulator LuxR
3040	 68.33	0	3442884..3443303	+	139	78063893	-	Bcep18194_B3047	-	hypothetical protein
3041	 68.71	0	3443355..3445019	-	554	78063894	-	Bcep18194_B3048	-	AMP-dependent synthetase and ligase
3042	 63.95	0	3445478..3446359	+	293	78063895	-	Bcep18194_B3049	-	chaperone protein HchA
3043	 68.97	0	3446616..3447353	+	245	78063896	-	Bcep18194_B3050	-	two component transcriptional regulator
3044	 69.61	0	3447356..3448441	+	361	78063897	-	Bcep18194_B3051	-	periplasmic sensor signal transduction histidine kinase
3045	 68.12	0	3448460..3449146	-	228	78063898	-	Bcep18194_B3052	-	hypothetical protein
3046	 69.80	0	3449340..3450617	+	425	78063899	-	Bcep18194_B3053	-	major facilitator transporter
3047	 69.62	0	3450982..3451929	-	315	78063900	-	Bcep18194_B3054	-	LysR family transcriptional regulator
3048	 71.12	+1	3452049..3453104	+	351	78063901	pdxA	Bcep18194_B3055	-	4-hydroxythreonine-4-phosphate dehydrogenase
3049	 63.51	0	3453155..3454327	+	390	78063902	-	Bcep18194_B3056	-	mandelate racemase/muconate lactonizing protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.