IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2881	 62.50	-1	3269397..3269900	+	167	78063734	-	Bcep18194_B2887	-	hypothetical protein
2882	 65.73	0	3269897..3271717	+	606	78063735	-	Bcep18194_B2888	-	periplasmic sensor hybrid histidine kinase
2883	 66.43	0	3271792..3272211	-	139	78063736	-	Bcep18194_B2889	-	hypothetical protein
2884	 71.19	+1	3272222..3272707	-	161	78063737	-	Bcep18194_B2890	-	hypothetical protein
2885	 67.76	0	3272743..3273477	+	244	78063738	-	Bcep18194_B2891	-	hypothetical protein
2886	 74.20	+2	3273577..3275010	+	477	78063739	-	Bcep18194_B2892	-	major facilitator transporter
2887	 66.12	0	3275031..3275396	+	121	78063740	-	Bcep18194_B2893	-	hypothetical protein
2888	 68.85	0	3275503..3276372	+	289	78063741	-	Bcep18194_B2894	-	hypothetical protein
2889	 69.98	0	3276583..3277215	+	210	78063742	-	Bcep18194_B2895	-	lysine exporter protein LysE/YggA
2890	 61.01	-1	3277218..3277535	+	105	78063743	-	Bcep18194_B2896	-	hypothetical protein
2891	 66.67	0	3277565..3278266	-	233	78063744	-	Bcep18194_B2897	-	hypothetical protein
2892	 63.69	0	3278411..3279082	-	223	78063745	-	Bcep18194_B2898	-	hypothetical protein
2893	 64.73	0	3279210..3279674	-	154	78063746	-	Bcep18194_B2899	-	AsnC family transcriptional regulator
2894	 67.35	0	3279793..3280527	+	244	78063747	-	Bcep18194_B2900	-	branched-chain amino acid efflux pump AzlC
2895	 67.96	0	3280520..3280828	+	102	78063748	-	Bcep18194_B2901	-	hypothetical protein
2896	 68.21	0	3281009..3281788	+	259	78063749	-	Bcep18194_B2902	-	exopolyphosphatase / 5'-nucleotidase / 3'-nucleotidase
2897	 70.56	+1	3282107..3282928	-	273	78063750	-	Bcep18194_B2903	-	Short-chain dehydrogenase/reductase SDR
2898	 68.36	0	3282943..3284184	-	413	78063751	-	Bcep18194_B2904	-	major facilitator transporter
2899	 68.30	0	3284396..3285070	+	224	78063752	-	Bcep18194_B2905	-	ArsR family transcriptional regulator
2900	 65.95	0	3285112..3287778	-	888	78063753	-	Bcep18194_B2906	-	Alpha-1,2-mannosidase, putative
2901	 66.83	0	3287846..3290317	-	823	78063754	-	Bcep18194_B2907	-	Alpha-1,2-mannosidase, putative
2902	 61.32	-1	3290645..3291112	-	155	78063755	-	Bcep18194_B2908	-	hypothetical protein
2903	 67.97	0	3291232..3292455	-	407	78063756	-	Bcep18194_B2909	-	allantoate amidohydrolase
2904	 68.06	0	3292600..3293529	+	309	78063757	-	Bcep18194_B2910	-	LysR family transcriptional regulator
2905	 71.62	+1	3293587..3294939	-	450	78063758	-	Bcep18194_B2911	-	pyridoxal-dependent decarboxylase
2906	 66.00	0	3294960..3295259	-	99	78063759	-	Bcep18194_B2912	-	ArsR family transcriptional regulator
2907	 71.40	+1	3295437..3296324	-	295	78063760	-	Bcep18194_B2913	-	LysR family transcriptional regulator
2908	 69.08	0	3296455..3297492	+	345	78063761	-	Bcep18194_B2914	-	aldo/keto reductase
2909	 58.75	-2	3297621..3297923	+	100	78063762	-	Bcep18194_B2915	-	ArsR family transcriptional regulator
2910	 64.37	0	3297985..3298986	+	333	78063763	-	Bcep18194_B2916	-	zinc-containing alcohol dehydrogenase superfamily protein
2911	 65.62	0	3299270..3299746	+	158	78063764	-	Bcep18194_B2917	-	GCN5-related N-acetyltransferase
2912	 67.22	0	3299905..3300630	-	241	78063765	-	Bcep18194_B2918	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
2913	 68.55	0	3300824..3301831	+	335	78063766	-	Bcep18194_B2919	-	hypothetical protein
2914	 61.59	-1	3302053..3302643	+	196	78063767	-	Bcep18194_B2920	-	hypothetical protein
2915	 68.64	0	3303205..3304014	+	269	78063768	-	Bcep18194_B2921	-	Thiol-disulfide isomerase/thioredoxin-like
2916	 66.23	0	3304052..3304969	-	305	78063769	-	Bcep18194_B2922	-	LysR family transcriptional regulator
2917	 66.00	0	3305080..3305679	+	199	78063770	-	Bcep18194_B2923	-	(Acyl-carrier protein) phosphodiesterase
2918	 58.18	-2	3306100..3306429	+	109	78063771	-	Bcep18194_B2924	-	hypothetical protein
2919	 65.42	0	3306426..3306746	+	106	78063772	-	Bcep18194_B2925	-	hypothetical protein
2920	 65.93	0	3306915..3307319	-	134	78063773	-	Bcep18194_B2926	-	hypothetical protein
2921	 67.29	0	3307446..3309038	-	530	78063774	-	Bcep18194_B2927	-	EmrB/QacA family drug resistance transporter
2922	 72.21	+1	3309035..3310153	-	372	78063775	-	Bcep18194_B2928	-	HlyD family secretion protein
2923	 72.85	+1	3310213..3311667	-	484	78063776	-	Bcep18194_B2929	-	RND efflux system outer membrane lipoprotein
2924	 69.12	0	3311766..3312539	+	257	78063777	-	Bcep18194_B2930	-	AraC family transcriptional regulator
2925	 69.41	0	3312653..3313711	+	352	78063778	-	Bcep18194_B2931	-	LysR family transcriptional regulator
2926	 66.37	0	3313629..3315341	-	570	78063779	-	Bcep18194_B2932	-	2-isopropylmalate synthase
2927	 60.26	-1	3316288..3316677	+	129	78063780	-	Bcep18194_B2933	-	hypothetical protein
2928	 65.85	0	3316814..3317665	+	283	78063781	-	Bcep18194_B2934	-	hypothetical protein
2929	 65.27	0	3317671..3318600	+	309	78063782	-	Bcep18194_B2935	-	hypothetical protein
2930	 68.86	0	3318884..3320161	+	425	78063783	-	Bcep18194_B2936	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2931	 67.82	0	3320262..3320783	-	173	78063784	-	Bcep18194_B2937	-	BadM/Rrf2 family transcriptional regulator
2932	 62.74	-1	3320967..3321806	+	279	78063785	-	Bcep18194_B2938	-	AraC family transcriptional regulator
2933	 67.41	0	3321883..3325230	-	1115	78063786	-	Bcep18194_B2939	-	outer membrane autotransporter barrel
2934	 55.10	-2	3325340..3325633	-	97	78063787	-	Bcep18194_B2940	-	hypothetical protein
2935	 70.62	+1	3325673..3327037	-	454	78063788	-	Bcep18194_B2941	-	peptidase M23B
2936	 66.78	0	3327380..3328246	+	288	78063789	-	Bcep18194_B2942	-	MscS mechanosensitive ion channel
2937	 67.81	0	3328298..3329695	-	465	78063790	-	Bcep18194_B2943	-	hypothetical protein
2938	 69.27	0	3330009..3330431	+	140	78063791	-	Bcep18194_B2944	-	NUDIX hydrolase
2939	 67.90	0	3330475..3331608	-	377	78063792	-	Bcep18194_B2945	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
2940	 66.57	0	3331685..3332761	-	358	78063793	-	Bcep18194_B2946	-	ornithine cyclodeaminase
2941	 69.36	0	3332830..3333867	-	345	78063794	-	Bcep18194_B2947	-	histone deacetylase superfamily protein
2942	 66.26	0	3333983..3334471	+	162	78063795	-	Bcep18194_B2948	-	AsnC family transcriptional regulator
2943	 67.67	0	3334537..3334836	+	99	78063796	-	Bcep18194_B2949	-	hypothetical protein
2944	 63.66	0	3335348..3337009	+	553	78063797	-	Bcep18194_B2950	-	malate:quinone oxidoreductase
2945	 63.13	-1	3337447..3337644	+	65	78063798	-	Bcep18194_B2951	-	hypothetical protein
2946	 68.38	0	3337641..3339038	+	465	78063799	-	Bcep18194_B2952	-	ATP-dependent RNA helicase DbpA
2947	 70.06	0	3339060..3339944	-	294	78063800	-	Bcep18194_B2953	-	LysR family transcriptional regulator
2948	 69.30	0	3340067..3341017	+	316	78063801	-	Bcep18194_B2954	-	amidohydrolase 2
2949	 66.22	0	3341096..3341998	-	300	78063802	-	Bcep18194_B2955	-	meta-pathway phenol degradation-like protein
2950	 67.75	0	3342122..3342949	-	275	78063803	-	Bcep18194_B2956	-	Alpha/beta hydrolase
2951	 65.10	0	3342986..3343177	-	63	78063804	-	Bcep18194_B2957	-	4-oxalocrotonate tautomerase
2952	 69.58	0	3343206..3343994	-	262	78063805	-	Bcep18194_B2958	-	4-oxalocrotonate decarboxylase
2953	 67.62	0	3343991..3345037	-	348	78063806	-	Bcep18194_B2959	-	4-hydroxy-2-ketovalerate aldolase
2954	 68.95	0	3345078..3345998	-	306	78063807	-	Bcep18194_B2960	-	acetaldehyde dehydrogenase
2955	 68.45	0	3346039..3346821	-	260	78063808	-	Bcep18194_B2961	-	4-oxalocrotonate decarboxylase
2956	 69.97	0	3346850..3348454	-	534	78063809	-	Bcep18194_B2962	-	betaine-aldehyde dehydrogenase
2957	 74.22	+2	3348477..3348926	-	149	78063810	-	Bcep18194_B2963	-	hypothetical protein
2958	 65.29	0	3348948..3349892	-	314	78063811	-	Bcep18194_B2964	-	catechol 2,3-dioxygenase
2959	 71.99	+1	3349910..3350266	-	118	78063812	-	Bcep18194_B2965	-	ferredoxin
2960	 68.26	0	3350268..3351332	-	354	78063813	-	Bcep18194_B2966	-	oxidoreductase FAD/NAD(P)-binding
2961	 68.07	0	3351359..3351715	-	118	78063814	-	Bcep18194_B2967	-	phenol hydroxylase region
2962	 62.35	-1	3351795..3353345	-	516	78063815	-	Bcep18194_B2968	-	methane/phenol/toluene hydroxylase
2963	 60.74	-1	3353384..3353653	-	89	78063816	-	Bcep18194_B2969	-	monooxygenase component MmoB/DmpM
2964	 68.37	0	3353689..3354684	-	331	78063817	-	Bcep18194_B2970	-	methane/phenol/toluene hydroxylase
2965	 65.37	0	3354701..3354931	-	76	78063818	-	Bcep18194_B2971	-	phenol hydroxylase subunit
2966	 69.51	0	3355218..3356906	+	562	78063819	-	Bcep18194_B2972	-	sigma-54 dependent trancsriptional regulator
2967	 67.99	0	3356908..3357663	+	251	78063820	-	Bcep18194_B2973	-	GntR family transcriptional regulator
2968	 66.79	0	3357688..3358512	-	274	78063821	-	Bcep18194_B2974	-	ABC phosphate/phosphonate transporter, periplasmic ligand binding protein
2969	 65.89	0	3358814..3359839	+	341	78063822	-	Bcep18194_B2975	-	Fatty acid desaturase
2970	 67.42	0	3359904..3361226	+	440	78063823	-	Bcep18194_B2976	-	benzoate membrane transport protein
2971	 54.91	-2	3361594..3362214	-	206	78063824	-	Bcep18194_B2977	-	hypothetical protein
2972	 58.88	-2	3362218..3362538	-	106	78063825	-	Bcep18194_B2978	-	hypothetical protein
2973	 69.48	0	3363016..3363903	-	295	78063826	-	Bcep18194_B2980	-	NmrA-like protein
2974	 69.28	0	3364257..3365174	-	305	78063827	-	Bcep18194_B2981	-	AraC family transcriptional regulator
2975	 69.49	0	3365213..3365566	+	117	78063828	-	Bcep18194_B2982	-	hypothetical protein
2976	 66.14	0	3365606..3366559	-	317	78063829	-	Bcep18194_B2983	-	LysR family transcriptional regulator
2977	 68.65	0	3366660..3368018	+	452	78063830	-	Bcep18194_B2984	-	NADH dehydrogenase, FAD-containing subunit
2978	 63.91	0	3368345..3368779	+	144	78063831	-	Bcep18194_B2985	-	hypothetical protein
2979	 67.04	0	3368959..3370578	+	539	78063832	-	Bcep18194_B2986	-	histidine acid phosphatase
2980	 64.46	0	3370602..3371282	-	226	78063833	-	Bcep18194_B2987	-	metal-dependent hydrolase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.