IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2855	 68.97	0	3232637..3234460	+	607	78063708	-	Bcep18194_B2861	-	hemolysin activation/secretion protein-like
2856	 67.56	0	3234631..3237642	+	1003	78063709	-	Bcep18194_B2862	-	filamentous haemagglutinin-like
2857	 68.72	0	3238607..3240019	+	470	78063710	-	Bcep18194_B2863	-	sugar transferase
2858	 71.28	+1	3240072..3241241	+	389	78063711	-	Bcep18194_B2864	-	polysaccharide export protein
2859	 72.29	+1	3241238..3241717	+	159	78063712	-	Bcep18194_B2865	-	protein tyrosine phosphatase
2860	 69.98	0	3241714..3244008	+	764	78063713	-	Bcep18194_B2866	-	exopolysaccharide transporter
2861	 67.87	0	3244005..3245252	+	415	78063714	-	Bcep18194_B2867	-	glycosyl transferase, group 1
2862	 67.48	0	3245249..3246481	+	410	78063715	-	Bcep18194_B2868	-	hypothetical protein
2863	 70.22	0	3246475..3247767	+	430	78063716	-	Bcep18194_B2869	-	hypothetical protein
2864	 66.05	0	3247757..3248884	+	375	78063717	-	Bcep18194_B2870	-	hypothetical protein
2865	 64.49	0	3248892..3249947	+	351	78063718	-	Bcep18194_B2871	-	acyltransferase 3
2866	 60.94	-1	3250232..3250930	-	232	78063719	-	Bcep18194_B2872	-	hypothetical protein
2867	 59.93	-1	3251117..3251680	-	187	78063720	-	Bcep18194_B2873	-	hypothetical protein
2868	 56.43	-2	3251689..3252723	-	344	78063721	-	Bcep18194_B2874	-	hypothetical protein
2869	 63.94	0	3252859..3253335	-	158	78063722	-	Bcep18194_B2875	-	hypothetical protein
2870	 61.86	-1	3253335..3254021	-	228	78063723	-	Bcep18194_B2876	-	hypothetical protein
2871	 61.44	-1	3254055..3256310	-	751	78063724	-	Bcep18194_B2877	-	hypothetical protein
2872	 60.99	-1	3256414..3256977	-	187	78063725	-	Bcep18194_B2878	-	hypothetical protein
2873	 67.20	0	3257460..3260471	-	1003	78063726	-	Bcep18194_B2879	-	multi-sensor hybrid histidine kinase
2874	 64.74	0	3260607..3261281	-	224	78063727	-	Bcep18194_B2880	-	two component LuxR family transcriptional regulator
2875	 64.32	0	3261547..3261930	+	127	78063728	-	Bcep18194_B2881	-	hypothetical protein
2876	 69.02	0	3262045..3265143	-	1032	78063729	-	Bcep18194_B2882	-	periplasmic sensor hybrid histidine kinase
2877	 65.99	0	3265440..3266468	-	342	78063730	-	Bcep18194_B2883	-	hypothetical protein
2878	 69.32	0	3266586..3267413	-	275	78063731	-	Bcep18194_B2884	-	hypothetical protein
2879	 62.07	-1	3267534..3268121	-	195	78063732	-	Bcep18194_B2885	-	hypothetical protein
2880	 64.60	0	3268482..3269354	+	290	78063733	-	Bcep18194_B2886	-	response regulator receiver protein
2881	 62.50	-1	3269397..3269900	+	167	78063734	-	Bcep18194_B2887	-	hypothetical protein
2882	 65.73	0	3269897..3271717	+	606	78063735	-	Bcep18194_B2888	-	periplasmic sensor hybrid histidine kinase
2883	 66.43	0	3271792..3272211	-	139	78063736	-	Bcep18194_B2889	-	hypothetical protein
2884	 71.19	+1	3272222..3272707	-	161	78063737	-	Bcep18194_B2890	-	hypothetical protein
2885	 67.76	0	3272743..3273477	+	244	78063738	-	Bcep18194_B2891	-	hypothetical protein
2886	 74.20	+2	3273577..3275010	+	477	78063739	-	Bcep18194_B2892	-	major facilitator transporter
2887	 66.12	0	3275031..3275396	+	121	78063740	-	Bcep18194_B2893	-	hypothetical protein
2888	 68.85	0	3275503..3276372	+	289	78063741	-	Bcep18194_B2894	-	hypothetical protein
2889	 69.98	0	3276583..3277215	+	210	78063742	-	Bcep18194_B2895	-	lysine exporter protein LysE/YggA
2890	 61.01	-1	3277218..3277535	+	105	78063743	-	Bcep18194_B2896	-	hypothetical protein
2891	 66.67	0	3277565..3278266	-	233	78063744	-	Bcep18194_B2897	-	hypothetical protein
2892	 63.69	0	3278411..3279082	-	223	78063745	-	Bcep18194_B2898	-	hypothetical protein
2893	 64.73	0	3279210..3279674	-	154	78063746	-	Bcep18194_B2899	-	AsnC family transcriptional regulator
2894	 67.35	0	3279793..3280527	+	244	78063747	-	Bcep18194_B2900	-	branched-chain amino acid efflux pump AzlC
2895	 67.96	0	3280520..3280828	+	102	78063748	-	Bcep18194_B2901	-	hypothetical protein
2896	 68.21	0	3281009..3281788	+	259	78063749	-	Bcep18194_B2902	-	exopolyphosphatase / 5'-nucleotidase / 3'-nucleotidase
2897	 70.56	+1	3282107..3282928	-	273	78063750	-	Bcep18194_B2903	-	Short-chain dehydrogenase/reductase SDR
2898	 68.36	0	3282943..3284184	-	413	78063751	-	Bcep18194_B2904	-	major facilitator transporter
2899	 68.30	0	3284396..3285070	+	224	78063752	-	Bcep18194_B2905	-	ArsR family transcriptional regulator
2900	 65.95	0	3285112..3287778	-	888	78063753	-	Bcep18194_B2906	-	Alpha-1,2-mannosidase, putative
2901	 66.83	0	3287846..3290317	-	823	78063754	-	Bcep18194_B2907	-	Alpha-1,2-mannosidase, putative
2902	 61.32	-1	3290645..3291112	-	155	78063755	-	Bcep18194_B2908	-	hypothetical protein
2903	 67.97	0	3291232..3292455	-	407	78063756	-	Bcep18194_B2909	-	allantoate amidohydrolase
2904	 68.06	0	3292600..3293529	+	309	78063757	-	Bcep18194_B2910	-	LysR family transcriptional regulator
2905	 71.62	+1	3293587..3294939	-	450	78063758	-	Bcep18194_B2911	-	pyridoxal-dependent decarboxylase
2906	 66.00	0	3294960..3295259	-	99	78063759	-	Bcep18194_B2912	-	ArsR family transcriptional regulator
2907	 71.40	+1	3295437..3296324	-	295	78063760	-	Bcep18194_B2913	-	LysR family transcriptional regulator
2908	 69.08	0	3296455..3297492	+	345	78063761	-	Bcep18194_B2914	-	aldo/keto reductase
2909	 58.75	-2	3297621..3297923	+	100	78063762	-	Bcep18194_B2915	-	ArsR family transcriptional regulator
2910	 64.37	0	3297985..3298986	+	333	78063763	-	Bcep18194_B2916	-	zinc-containing alcohol dehydrogenase superfamily protein
2911	 65.62	0	3299270..3299746	+	158	78063764	-	Bcep18194_B2917	-	GCN5-related N-acetyltransferase
2912	 67.22	0	3299905..3300630	-	241	78063765	-	Bcep18194_B2918	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
2913	 68.55	0	3300824..3301831	+	335	78063766	-	Bcep18194_B2919	-	hypothetical protein
2914	 61.59	-1	3302053..3302643	+	196	78063767	-	Bcep18194_B2920	-	hypothetical protein
2915	 68.64	0	3303205..3304014	+	269	78063768	-	Bcep18194_B2921	-	Thiol-disulfide isomerase/thioredoxin-like
2916	 66.23	0	3304052..3304969	-	305	78063769	-	Bcep18194_B2922	-	LysR family transcriptional regulator
2917	 66.00	0	3305080..3305679	+	199	78063770	-	Bcep18194_B2923	-	(Acyl-carrier protein) phosphodiesterase
2918	 58.18	-2	3306100..3306429	+	109	78063771	-	Bcep18194_B2924	-	hypothetical protein
2919	 65.42	0	3306426..3306746	+	106	78063772	-	Bcep18194_B2925	-	hypothetical protein
2920	 65.93	0	3306915..3307319	-	134	78063773	-	Bcep18194_B2926	-	hypothetical protein
2921	 67.29	0	3307446..3309038	-	530	78063774	-	Bcep18194_B2927	-	EmrB/QacA family drug resistance transporter
2922	 72.21	+1	3309035..3310153	-	372	78063775	-	Bcep18194_B2928	-	HlyD family secretion protein
2923	 72.85	+1	3310213..3311667	-	484	78063776	-	Bcep18194_B2929	-	RND efflux system outer membrane lipoprotein
2924	 69.12	0	3311766..3312539	+	257	78063777	-	Bcep18194_B2930	-	AraC family transcriptional regulator
2925	 69.41	0	3312653..3313711	+	352	78063778	-	Bcep18194_B2931	-	LysR family transcriptional regulator
2926	 66.37	0	3313629..3315341	-	570	78063779	-	Bcep18194_B2932	-	2-isopropylmalate synthase
2927	 60.26	-1	3316288..3316677	+	129	78063780	-	Bcep18194_B2933	-	hypothetical protein
2928	 65.85	0	3316814..3317665	+	283	78063781	-	Bcep18194_B2934	-	hypothetical protein
2929	 65.27	0	3317671..3318600	+	309	78063782	-	Bcep18194_B2935	-	hypothetical protein
2930	 68.86	0	3318884..3320161	+	425	78063783	-	Bcep18194_B2936	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2931	 67.82	0	3320262..3320783	-	173	78063784	-	Bcep18194_B2937	-	BadM/Rrf2 family transcriptional regulator
2932	 62.74	-1	3320967..3321806	+	279	78063785	-	Bcep18194_B2938	-	AraC family transcriptional regulator
2933	 67.41	0	3321883..3325230	-	1115	78063786	-	Bcep18194_B2939	-	outer membrane autotransporter barrel
2934	 55.10	-2	3325340..3325633	-	97	78063787	-	Bcep18194_B2940	-	hypothetical protein
2935	 70.62	+1	3325673..3327037	-	454	78063788	-	Bcep18194_B2941	-	peptidase M23B
2936	 66.78	0	3327380..3328246	+	288	78063789	-	Bcep18194_B2942	-	MscS mechanosensitive ion channel
2937	 67.81	0	3328298..3329695	-	465	78063790	-	Bcep18194_B2943	-	hypothetical protein
2938	 69.27	0	3330009..3330431	+	140	78063791	-	Bcep18194_B2944	-	NUDIX hydrolase
2939	 67.90	0	3330475..3331608	-	377	78063792	-	Bcep18194_B2945	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
2940	 66.57	0	3331685..3332761	-	358	78063793	-	Bcep18194_B2946	-	ornithine cyclodeaminase
2941	 69.36	0	3332830..3333867	-	345	78063794	-	Bcep18194_B2947	-	histone deacetylase superfamily protein
2942	 66.26	0	3333983..3334471	+	162	78063795	-	Bcep18194_B2948	-	AsnC family transcriptional regulator
2943	 67.67	0	3334537..3334836	+	99	78063796	-	Bcep18194_B2949	-	hypothetical protein
2944	 63.66	0	3335348..3337009	+	553	78063797	-	Bcep18194_B2950	-	malate:quinone oxidoreductase
2945	 63.13	-1	3337447..3337644	+	65	78063798	-	Bcep18194_B2951	-	hypothetical protein
2946	 68.38	0	3337641..3339038	+	465	78063799	-	Bcep18194_B2952	-	ATP-dependent RNA helicase DbpA
2947	 70.06	0	3339060..3339944	-	294	78063800	-	Bcep18194_B2953	-	LysR family transcriptional regulator
2948	 69.30	0	3340067..3341017	+	316	78063801	-	Bcep18194_B2954	-	amidohydrolase 2
2949	 66.22	0	3341096..3341998	-	300	78063802	-	Bcep18194_B2955	-	meta-pathway phenol degradation-like protein
2950	 67.75	0	3342122..3342949	-	275	78063803	-	Bcep18194_B2956	-	Alpha/beta hydrolase
2951	 65.10	0	3342986..3343177	-	63	78063804	-	Bcep18194_B2957	-	4-oxalocrotonate tautomerase
2952	 69.58	0	3343206..3343994	-	262	78063805	-	Bcep18194_B2958	-	4-oxalocrotonate decarboxylase
2953	 67.62	0	3343991..3345037	-	348	78063806	-	Bcep18194_B2959	-	4-hydroxy-2-ketovalerate aldolase
2954	 68.95	0	3345078..3345998	-	306	78063807	-	Bcep18194_B2960	-	acetaldehyde dehydrogenase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.