IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2802	 62.40	-1	3179227..3179859	+	210	78063655	-	Bcep18194_B2808	-	hypothetical protein
2803	 67.82	0	3179880..3180314	-	144	78063656	-	Bcep18194_B2809	-	GCN5-related N-acetyltransferase
2804	 65.56	0	3180410..3181312	-	300	78063657	-	Bcep18194_B2810	-	hypothetical protein
2805	 64.40	0	3181429..3182268	-	279	78063658	-	Bcep18194_B2811	-	ABC spermidine/putrescine transporter, inner membrane subunit
2806	 64.34	0	3182265..3183251	-	328	78063659	-	Bcep18194_B2812	-	ABC spermidine/putrescine transporter, inner membrane subunit
2807	 62.86	-1	3183262..3184416	-	384	78063660	-	Bcep18194_B2813	-	spermidine/putrescine ABC transporter ATPase
2808	 62.18	-1	3184885..3185352	-	155	78063661	-	Bcep18194_B2814	-	cytidine/deoxycytidylate deaminase
2809	 65.18	0	3185460..3185930	-	156	78063662	-	Bcep18194_B2815	-	cyanate hydratase
2810	 68.94	0	3185961..3186620	-	219	78063663	-	Bcep18194_B2816	-	carbonate dehydratase
2811	 69.45	0	3186734..3187630	+	298	78063664	-	Bcep18194_B2817	-	DNA-binding transcriptional regulator CynR
2812	 64.69	0	3187716..3188171	+	151	78063665	-	Bcep18194_B2818	-	hypothetical protein
2813	 61.76	-1	3188233..3188436	-	67	78063666	-	Bcep18194_B2819	-	hypothetical protein
2814	 67.95	0	3188471..3189790	-	439	78063667	-	Bcep18194_B2820	-	uncharacterized membrane-anchored protein
2815	 68.72	0	3189952..3190827	+	291	78063668	-	Bcep18194_B2821	-	LysR family transcriptional regulator
2816	 71.48	+1	3190828..3191388	-	186	78063669	-	Bcep18194_B2822	-	hypothetical protein
2817	 67.81	0	3191530..3191880	-	116	78063670	-	Bcep18194_B2823	-	hypothetical protein
2818	 68.08	0	3192500..3193420	-	306	78063671	-	Bcep18194_B2824	-	LysR family transcriptional regulator
2819	 68.19	0	3193745..3194269	+	174	78063672	-	Bcep18194_B2825	-	hypothetical protein
2820	 64.81	0	3194311..3195333	+	340	78063673	-	Bcep18194_B2826	-	aldo/keto reductase
2821	 67.91	0	3195388..3196839	+	483	78063674	-	Bcep18194_B2827	-	succinate semialdehyde dehydrogenase
2822	 67.03	0	3196968..3198341	+	457	78063675	-	Bcep18194_B2828	-	major facilitator transporter
2823	 60.20	-1	3198503..3198796	-	97	78063676	-	Bcep18194_B2829	-	plasmid stabilization system protein
2824	 64.73	0	3198799..3199056	-	85	78063677	-	Bcep18194_B2830	-	transcriptional regulator
2825	 63.75	0	3199285..3200004	+	239	78063678	-	Bcep18194_B2831	-	hypothetical protein
2826	 59.29	-2	3200085..3200843	+	252	78063679	-	Bcep18194_B2832	-	hypothetical protein
2827	 69.98	0	3201357..3202232	-	291	78063680	-	Bcep18194_B2833	-	LysR family transcriptional regulator
2828	 68.58	0	3202464..3203402	+	312	78063681	-	Bcep18194_B2834	-	LysR family transcriptional regulator
2829	 69.26	0	3203718..3205142	+	474	78063682	-	Bcep18194_B2835	-	lactaldehyde dehydrogenase
2830	 66.82	0	3205260..3206606	+	448	78063683	-	Bcep18194_B2836	-	major facilitator transporter
2831	 64.94	0	3206603..3207820	+	405	78063684	-	Bcep18194_B2837	-	mandelate racemase/muconate lactonizing protein
2832	 66.43	0	3207836..3209503	+	555	78063685	-	Bcep18194_B2838	-	glucose-methanol-choline oxidoreductase
2833	 66.67	0	3209543..3210445	-	300	78063686	-	Bcep18194_B2839	-	LysR family transcriptional regulator
2834	 64.27	0	3210555..3211262	+	235	78063687	-	Bcep18194_B2840	-	hypothetical protein
2835	 60.81	-1	3211408..3211680	-	90	78063688	-	Bcep18194_B2841	-	hypothetical protein
2836	 63.35	0	3211715..3212650	+	311	78063689	-	Bcep18194_B2842	-	Beta-lactamase-like
2837	 65.45	0	3212830..3213651	-	273	78063690	-	Bcep18194_B2843	-	ABC proline/glycine betaine transporter, ATPase subunit
2838	 68.12	0	3213666..3214631	-	321	78063691	-	Bcep18194_B2844	-	ABC proline/glycine betaine transporter, inner membrane subunit
2839	 66.76	0	3214702..3215739	-	345	78063692	-	Bcep18194_B2845	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
2840	 65.45	0	3216311..3217462	+	383	78063693	-	Bcep18194_B2846	-	outer membrane protein (porin)
2841	 64.55	0	3217966..3218955	+	329	78063694	-	Bcep18194_B2847	-	RDD family membrane protein
2842	 61.50	-1	3218966..3219178	+	70	78063695	-	Bcep18194_B2848	-	hypothetical protein
2843	 69.63	0	3219342..3220151	+	269	78063696	-	Bcep18194_B2849	-	Beta-lactamase
2844	 68.16	0	3220148..3221287	+	379	78063697	-	Bcep18194_B2850	-	acyltransferase 3
2845	 68.98	0	3221408..3222142	-	244	78063698	-	Bcep18194_B2851	-	hypothetical protein
2846	 66.67	0	3222176..3223567	-	463	78063699	-	Bcep18194_B2852	-	alkaline phosphatase
2847	 67.85	0	3223600..3225036	-	478	78063700	-	Bcep18194_B2853	-	alkaline phosphatase
2848	 71.07	+1	3225191..3225781	-	196	78063701	-	Bcep18194_B2854	-	phospholipid N-methyltransferase-like
2849	 65.75	0	3226009..3226992	-	327	78063702	-	Bcep18194_B2855	-	aldo/keto reductase
2850	 68.41	0	3227112..3228029	+	305	78063703	-	Bcep18194_B2856	-	LysR family transcriptional regulator
2851	 64.40	0	3228114..3228554	-	146	78063704	-	Bcep18194_B2857	-	GCN5-related N-acetyltransferase
2852	 67.65	0	3228660..3230381	-	573	78063705	-	Bcep18194_B2858	-	pyruvate dehydrogenase
2853	 65.87	0	3230625..3231125	-	166	78063706	-	Bcep18194_B2859	-	AsnC family transcriptional regulator
2854	 66.18	0	3231323..3232339	+	338	78063707	-	Bcep18194_B2860	-	1-aminocyclopropane-1-carboxylate deaminase
2855	 68.97	0	3232637..3234460	+	607	78063708	-	Bcep18194_B2861	-	hemolysin activation/secretion protein-like
2856	 67.56	0	3234631..3237642	+	1003	78063709	-	Bcep18194_B2862	-	filamentous haemagglutinin-like
2857	 68.72	0	3238607..3240019	+	470	78063710	-	Bcep18194_B2863	-	sugar transferase
2858	 71.28	+1	3240072..3241241	+	389	78063711	-	Bcep18194_B2864	-	polysaccharide export protein
2859	 72.29	+1	3241238..3241717	+	159	78063712	-	Bcep18194_B2865	-	protein tyrosine phosphatase
2860	 69.98	0	3241714..3244008	+	764	78063713	-	Bcep18194_B2866	-	exopolysaccharide transporter
2861	 67.87	0	3244005..3245252	+	415	78063714	-	Bcep18194_B2867	-	glycosyl transferase, group 1
2862	 67.48	0	3245249..3246481	+	410	78063715	-	Bcep18194_B2868	-	hypothetical protein
2863	 70.22	0	3246475..3247767	+	430	78063716	-	Bcep18194_B2869	-	hypothetical protein
2864	 66.05	0	3247757..3248884	+	375	78063717	-	Bcep18194_B2870	-	hypothetical protein
2865	 64.49	0	3248892..3249947	+	351	78063718	-	Bcep18194_B2871	-	acyltransferase 3
2866	 60.94	-1	3250232..3250930	-	232	78063719	-	Bcep18194_B2872	-	hypothetical protein
2867	 59.93	-1	3251117..3251680	-	187	78063720	-	Bcep18194_B2873	-	hypothetical protein
2868	 56.43	-2	3251689..3252723	-	344	78063721	-	Bcep18194_B2874	-	hypothetical protein
2869	 63.94	0	3252859..3253335	-	158	78063722	-	Bcep18194_B2875	-	hypothetical protein
2870	 61.86	-1	3253335..3254021	-	228	78063723	-	Bcep18194_B2876	-	hypothetical protein
2871	 61.44	-1	3254055..3256310	-	751	78063724	-	Bcep18194_B2877	-	hypothetical protein
2872	 60.99	-1	3256414..3256977	-	187	78063725	-	Bcep18194_B2878	-	hypothetical protein
2873	 67.20	0	3257460..3260471	-	1003	78063726	-	Bcep18194_B2879	-	multi-sensor hybrid histidine kinase
2874	 64.74	0	3260607..3261281	-	224	78063727	-	Bcep18194_B2880	-	two component LuxR family transcriptional regulator
2875	 64.32	0	3261547..3261930	+	127	78063728	-	Bcep18194_B2881	-	hypothetical protein
2876	 69.02	0	3262045..3265143	-	1032	78063729	-	Bcep18194_B2882	-	periplasmic sensor hybrid histidine kinase
2877	 65.99	0	3265440..3266468	-	342	78063730	-	Bcep18194_B2883	-	hypothetical protein
2878	 69.32	0	3266586..3267413	-	275	78063731	-	Bcep18194_B2884	-	hypothetical protein
2879	 62.07	-1	3267534..3268121	-	195	78063732	-	Bcep18194_B2885	-	hypothetical protein
2880	 64.60	0	3268482..3269354	+	290	78063733	-	Bcep18194_B2886	-	response regulator receiver protein
2881	 62.50	-1	3269397..3269900	+	167	78063734	-	Bcep18194_B2887	-	hypothetical protein
2882	 65.73	0	3269897..3271717	+	606	78063735	-	Bcep18194_B2888	-	periplasmic sensor hybrid histidine kinase
2883	 66.43	0	3271792..3272211	-	139	78063736	-	Bcep18194_B2889	-	hypothetical protein
2884	 71.19	+1	3272222..3272707	-	161	78063737	-	Bcep18194_B2890	-	hypothetical protein
2885	 67.76	0	3272743..3273477	+	244	78063738	-	Bcep18194_B2891	-	hypothetical protein
2886	 74.20	+2	3273577..3275010	+	477	78063739	-	Bcep18194_B2892	-	major facilitator transporter
2887	 66.12	0	3275031..3275396	+	121	78063740	-	Bcep18194_B2893	-	hypothetical protein
2888	 68.85	0	3275503..3276372	+	289	78063741	-	Bcep18194_B2894	-	hypothetical protein
2889	 69.98	0	3276583..3277215	+	210	78063742	-	Bcep18194_B2895	-	lysine exporter protein LysE/YggA
2890	 61.01	-1	3277218..3277535	+	105	78063743	-	Bcep18194_B2896	-	hypothetical protein
2891	 66.67	0	3277565..3278266	-	233	78063744	-	Bcep18194_B2897	-	hypothetical protein
2892	 63.69	0	3278411..3279082	-	223	78063745	-	Bcep18194_B2898	-	hypothetical protein
2893	 64.73	0	3279210..3279674	-	154	78063746	-	Bcep18194_B2899	-	AsnC family transcriptional regulator
2894	 67.35	0	3279793..3280527	+	244	78063747	-	Bcep18194_B2900	-	branched-chain amino acid efflux pump AzlC
2895	 67.96	0	3280520..3280828	+	102	78063748	-	Bcep18194_B2901	-	hypothetical protein
2896	 68.21	0	3281009..3281788	+	259	78063749	-	Bcep18194_B2902	-	exopolyphosphatase / 5'-nucleotidase / 3'-nucleotidase
2897	 70.56	+1	3282107..3282928	-	273	78063750	-	Bcep18194_B2903	-	Short-chain dehydrogenase/reductase SDR
2898	 68.36	0	3282943..3284184	-	413	78063751	-	Bcep18194_B2904	-	major facilitator transporter
2899	 68.30	0	3284396..3285070	+	224	78063752	-	Bcep18194_B2905	-	ArsR family transcriptional regulator
2900	 65.95	0	3285112..3287778	-	888	78063753	-	Bcep18194_B2906	-	Alpha-1,2-mannosidase, putative
2901	 66.83	0	3287846..3290317	-	823	78063754	-	Bcep18194_B2907	-	Alpha-1,2-mannosidase, putative
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.