IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2753	 65.53	0	3126013..3127857	-	614	78063606	-	Bcep18194_B2759	-	peptidase S10, serine carboxypeptidase
2754	 67.82	0	3128570..3130384	-	604	78063607	-	Bcep18194_B2760	-	endonuclease/exonuclease/phosphatase
2755	 69.53	0	3130607..3131548	-	313	78063608	-	Bcep18194_B2761	-	copper resistance protein D
2756	 67.45	0	3131545..3131925	-	126	78063609	-	Bcep18194_B2762	-	copper resistance protein CopC
2757	 63.22	-1	3131940..3132287	-	115	78063610	-	Bcep18194_B2763	-	hypothetical protein
2758	 67.36	0	3132355..3133650	-	431	78063611	-	Bcep18194_B2764	-	multicopper oxidase, type 3
2759	 69.07	0	3133652..3135148	-	498	78063612	-	Bcep18194_B2765	-	outer membrane efflux protein
2760	 70.57	+1	3135145..3135426	-	93	78063613	-	Bcep18194_B2766	-	hypothetical protein
2761	 68.01	0	3135517..3136038	-	173	78063614	-	Bcep18194_B2767	-	hypothetical protein
2762	 63.54	0	3136195..3136866	+	223	78063615	-	Bcep18194_B2768	-	two component heavy metal response transcriptional regulator
2763	 68.43	0	3136863..3138281	+	472	78063616	-	Bcep18194_B2769	-	heavy metal sensor signal transduction histidine kinase
2764	 67.06	0	3138687..3139697	+	336	78063617	-	Bcep18194_B2770	-	Sodium/calcium exchanger membrane region
2765	 64.63	0	3139703..3140341	-	212	78063618	-	Bcep18194_B2771	-	glutathione S-transferase-like protein
2766	 67.43	0	3140478..3140870	+	130	78063619	-	Bcep18194_B2772	-	HxlR family transcriptional regulator
2767	 64.23	0	3140902..3141270	+	122	78063620	-	Bcep18194_B2773	-	hypothetical protein
2768	 65.49	0	3141267..3141776	-	169	78063621	-	Bcep18194_B2774	-	PBP family phospholipid-binding protein
2769	 66.24	0	3141955..3142902	+	315	78063622	-	Bcep18194_B2775	-	hypothetical protein
2770	 67.97	0	3143085..3144470	+	461	78063623	-	Bcep18194_B2776	-	major facilitator transporter
2771	 69.82	0	3144541..3145617	-	358	78063624	-	Bcep18194_B2777	-	peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase
2772	 66.67	0	3145725..3147305	-	526	78063625	-	Bcep18194_B2778	-	hypothetical protein
2773	 64.34	0	3147404..3148519	-	371	78063626	-	Bcep18194_B2779	-	ABC spermidine/putrescine transporter, periplasmic ligand binding protein
2774	 67.48	0	3148736..3150466	-	576	78063627	-	Bcep18194_B2780	-	amidohydrolase
2775	 69.43	0	3150705..3151535	+	276	78063628	-	Bcep18194_B2781	-	LuxR family transcriptional regulator
2776	 68.81	0	3151551..3152576	-	341	78063629	-	Bcep18194_B2782	-	LysR family transcriptional regulator
2777	 71.28	+1	3152601..3153791	-	396	78063630	-	Bcep18194_B2783	-	major facilitator transporter
2778	 66.46	0	3153896..3155347	-	483	78063631	-	Bcep18194_B2784	-	FAD dependent oxidoreductase
2779	 63.77	0	3155439..3155783	-	114	78063632	-	Bcep18194_B2785	-	hypothetical protein
2780	 67.12	0	3155983..3156867	+	294	78063633	-	Bcep18194_B2786	-	LuxR family transcriptional regulator
2781	 67.93	0	3157035..3157985	+	316	78063634	-	Bcep18194_B2787	-	agmatinase
2782	 70.51	0	3158008..3159489	+	493	78063635	-	Bcep18194_B2788	-	betaine-aldehyde dehydrogenase
2783	 69.36	0	3159625..3160551	-	308	78063636	-	Bcep18194_B2789	-	patatin
2784	 64.83	0	3160985..3161854	+	289	78063637	-	Bcep18194_B2790	-	flagellar motor component-like
2785	 65.94	0	3161865..3162821	+	318	78063638	-	Bcep18194_B2791	-	OmpA/MotB family outer membrane protein
2786	 72.16	+1	3163057..3163620	+	187	78063639	-	Bcep18194_B2792	-	hypothetical protein
2787	 69.04	0	3163741..3165087	+	448	78063640	-	Bcep18194_B2793	-	hypothetical protein
2788	 68.52	0	3165196..3165519	-	107	78063641	-	Bcep18194_B2794	-	ModE family transcriptional regulator
2789	 68.70	0	3165625..3166116	-	163	78063642	-	Bcep18194_B2795	-	hypothetical protein
2790	 66.15	0	3166258..3167025	-	255	78063643	-	Bcep18194_B2796	-	DeoR family transcriptional regulator
2791	 67.55	0	3167069..3167749	-	226	78063644	-	Bcep18194_B2797	-	MgtC/SapB transporter
2792	 64.55	0	3168018..3168962	+	314	78063645	-	Bcep18194_B2798	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
2793	 64.46	0	3168986..3169666	+	226	78063646	-	Bcep18194_B2799	-	HAD family hydrolase
2794	 65.22	0	3169698..3169973	+	91	78063647	-	Bcep18194_B2800	-	hypothetical protein
2795	 66.42	0	3170018..3172468	+	816	78063648	-	Bcep18194_B2801	-	phosphoesterase
2796	 65.61	0	3172571..3173230	-	219	78063649	-	Bcep18194_B2802	-	hypothetical protein
2797	 65.98	0	3173392..3174555	-	387	78063650	-	Bcep18194_B2803	-	outer membrane protein (porin)
2798	 68.61	0	3175226..3175894	+	222	78063651	-	Bcep18194_B2804	-	GCN5-related N-acetyltransferase
2799	 68.58	0	3175935..3176720	-	261	78063652	-	Bcep18194_B2805	-	trans-aconitate 2-methyltransferase
2800	 67.45	0	3176858..3177748	+	296	78063653	-	Bcep18194_B2806	-	LysR family transcriptional regulator
2801	 66.12	0	3177896..3179179	+	427	78063654	-	Bcep18194_B2807	-	methionine gamma-lyase
2802	 62.40	-1	3179227..3179859	+	210	78063655	-	Bcep18194_B2808	-	hypothetical protein
2803	 67.82	0	3179880..3180314	-	144	78063656	-	Bcep18194_B2809	-	GCN5-related N-acetyltransferase
2804	 65.56	0	3180410..3181312	-	300	78063657	-	Bcep18194_B2810	-	hypothetical protein
2805	 64.40	0	3181429..3182268	-	279	78063658	-	Bcep18194_B2811	-	ABC spermidine/putrescine transporter, inner membrane subunit
2806	 64.34	0	3182265..3183251	-	328	78063659	-	Bcep18194_B2812	-	ABC spermidine/putrescine transporter, inner membrane subunit
2807	 62.86	-1	3183262..3184416	-	384	78063660	-	Bcep18194_B2813	-	spermidine/putrescine ABC transporter ATPase
2808	 62.18	-1	3184885..3185352	-	155	78063661	-	Bcep18194_B2814	-	cytidine/deoxycytidylate deaminase
2809	 65.18	0	3185460..3185930	-	156	78063662	-	Bcep18194_B2815	-	cyanate hydratase
2810	 68.94	0	3185961..3186620	-	219	78063663	-	Bcep18194_B2816	-	carbonate dehydratase
2811	 69.45	0	3186734..3187630	+	298	78063664	-	Bcep18194_B2817	-	DNA-binding transcriptional regulator CynR
2812	 64.69	0	3187716..3188171	+	151	78063665	-	Bcep18194_B2818	-	hypothetical protein
2813	 61.76	-1	3188233..3188436	-	67	78063666	-	Bcep18194_B2819	-	hypothetical protein
2814	 67.95	0	3188471..3189790	-	439	78063667	-	Bcep18194_B2820	-	uncharacterized membrane-anchored protein
2815	 68.72	0	3189952..3190827	+	291	78063668	-	Bcep18194_B2821	-	LysR family transcriptional regulator
2816	 71.48	+1	3190828..3191388	-	186	78063669	-	Bcep18194_B2822	-	hypothetical protein
2817	 67.81	0	3191530..3191880	-	116	78063670	-	Bcep18194_B2823	-	hypothetical protein
2818	 68.08	0	3192500..3193420	-	306	78063671	-	Bcep18194_B2824	-	LysR family transcriptional regulator
2819	 68.19	0	3193745..3194269	+	174	78063672	-	Bcep18194_B2825	-	hypothetical protein
2820	 64.81	0	3194311..3195333	+	340	78063673	-	Bcep18194_B2826	-	aldo/keto reductase
2821	 67.91	0	3195388..3196839	+	483	78063674	-	Bcep18194_B2827	-	succinate semialdehyde dehydrogenase
2822	 67.03	0	3196968..3198341	+	457	78063675	-	Bcep18194_B2828	-	major facilitator transporter
2823	 60.20	-1	3198503..3198796	-	97	78063676	-	Bcep18194_B2829	-	plasmid stabilization system protein
2824	 64.73	0	3198799..3199056	-	85	78063677	-	Bcep18194_B2830	-	transcriptional regulator
2825	 63.75	0	3199285..3200004	+	239	78063678	-	Bcep18194_B2831	-	hypothetical protein
2826	 59.29	-2	3200085..3200843	+	252	78063679	-	Bcep18194_B2832	-	hypothetical protein
2827	 69.98	0	3201357..3202232	-	291	78063680	-	Bcep18194_B2833	-	LysR family transcriptional regulator
2828	 68.58	0	3202464..3203402	+	312	78063681	-	Bcep18194_B2834	-	LysR family transcriptional regulator
2829	 69.26	0	3203718..3205142	+	474	78063682	-	Bcep18194_B2835	-	lactaldehyde dehydrogenase
2830	 66.82	0	3205260..3206606	+	448	78063683	-	Bcep18194_B2836	-	major facilitator transporter
2831	 64.94	0	3206603..3207820	+	405	78063684	-	Bcep18194_B2837	-	mandelate racemase/muconate lactonizing protein
2832	 66.43	0	3207836..3209503	+	555	78063685	-	Bcep18194_B2838	-	glucose-methanol-choline oxidoreductase
2833	 66.67	0	3209543..3210445	-	300	78063686	-	Bcep18194_B2839	-	LysR family transcriptional regulator
2834	 64.27	0	3210555..3211262	+	235	78063687	-	Bcep18194_B2840	-	hypothetical protein
2835	 60.81	-1	3211408..3211680	-	90	78063688	-	Bcep18194_B2841	-	hypothetical protein
2836	 63.35	0	3211715..3212650	+	311	78063689	-	Bcep18194_B2842	-	Beta-lactamase-like
2837	 65.45	0	3212830..3213651	-	273	78063690	-	Bcep18194_B2843	-	ABC proline/glycine betaine transporter, ATPase subunit
2838	 68.12	0	3213666..3214631	-	321	78063691	-	Bcep18194_B2844	-	ABC proline/glycine betaine transporter, inner membrane subunit
2839	 66.76	0	3214702..3215739	-	345	78063692	-	Bcep18194_B2845	-	ABC proline/glycine betaine transporter, periplasmic ligand binding protein
2840	 65.45	0	3216311..3217462	+	383	78063693	-	Bcep18194_B2846	-	outer membrane protein (porin)
2841	 64.55	0	3217966..3218955	+	329	78063694	-	Bcep18194_B2847	-	RDD family membrane protein
2842	 61.50	-1	3218966..3219178	+	70	78063695	-	Bcep18194_B2848	-	hypothetical protein
2843	 69.63	0	3219342..3220151	+	269	78063696	-	Bcep18194_B2849	-	Beta-lactamase
2844	 68.16	0	3220148..3221287	+	379	78063697	-	Bcep18194_B2850	-	acyltransferase 3
2845	 68.98	0	3221408..3222142	-	244	78063698	-	Bcep18194_B2851	-	hypothetical protein
2846	 66.67	0	3222176..3223567	-	463	78063699	-	Bcep18194_B2852	-	alkaline phosphatase
2847	 67.85	0	3223600..3225036	-	478	78063700	-	Bcep18194_B2853	-	alkaline phosphatase
2848	 71.07	+1	3225191..3225781	-	196	78063701	-	Bcep18194_B2854	-	phospholipid N-methyltransferase-like
2849	 65.75	0	3226009..3226992	-	327	78063702	-	Bcep18194_B2855	-	aldo/keto reductase
2850	 68.41	0	3227112..3228029	+	305	78063703	-	Bcep18194_B2856	-	LysR family transcriptional regulator
2851	 64.40	0	3228114..3228554	-	146	78063704	-	Bcep18194_B2857	-	GCN5-related N-acetyltransferase
2852	 67.65	0	3228660..3230381	-	573	78063705	-	Bcep18194_B2858	-	pyruvate dehydrogenase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.