IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
229	 70.68	+1	246866..247813	-	315	78061082	-	Bcep18194_B0230	-	transcriptional regulator
230	 66.67	0	247920..248228	+	102	78061083	-	Bcep18194_B0231	-	hypothetical protein
231	 69.65	0	248225..248626	+	133	78061084	-	Bcep18194_B0232	-	hypothetical protein
232	 68.69	0	248671..249264	-	197	78061085	-	Bcep18194_B0233	-	hypothetical protein
233	 67.46	0	249478..250866	-	462	78061086	-	Bcep18194_B0234	-	xanthine/uracil/vitamin C transporter
234	 66.96	0	251396..252073	-	225	78061087	-	Bcep18194_B0235	-	TetR family transcriptional regulator
235	 67.57	0	252122..252787	+	221	78061088	-	Bcep18194_B0236	-	O-methyltransferase family protein
236	 70.95	+1	252906..253442	-	178	78061089	-	Bcep18194_B0237	-	hypothetical protein
237	 70.05	0	253620..254624	-	334	78061090	-	Bcep18194_B0238	-	aldo/keto reductase
238	 70.34	0	254647..255762	-	371	78061091	-	Bcep18194_B0239	-	NADH-flavin oxidoreductase/NADH oxidase
239	 66.54	0	255832..256638	-	268	78061092	dkgB	Bcep18194_B0240	-	2,5-diketo-D-gluconate reductase B
240	 68.26	0	256796..257737	+	313	78061093	-	Bcep18194_B0241	-	LysR family transcriptional regulator
241	 66.87	0	257825..259300	-	491	78061094	-	Bcep18194_B0242	-	glucose-6-phosphate 1-dehydrogenase
242	 70.29	0	259503..260081	+	192	78061095	-	Bcep18194_B0243	-	TetR family transcriptional regulator
243	 70.32	0	260256..261131	+	291	78061096	-	Bcep18194_B0244	-	Short-chain dehydrogenase/reductase SDR
244	 67.31	0	261260..261880	-	206	78061097	-	Bcep18194_B0245	-	(Acyl-carrier protein) phosphodiesterase
245	 66.25	0	261944..262426	+	160	78061098	-	Bcep18194_B0246	-	putative transcriptional regulator
246	 69.37	0	262455..263231	-	258	78061099	-	Bcep18194_B0247	-	hypothetical protein
247	 66.45	0	263483..264391	+	302	78061100	-	Bcep18194_B0248	-	LysR family transcriptional regulator
248	 62.87	-1	264527..265105	-	192	78061101	-	Bcep18194_B0249	-	alkylhydroperoxidase AhpD core
249	 69.92	0	265191..266174	-	327	78061102	-	Bcep18194_B0250	-	zinc-containing alcohol dehydrogenase superfamily protein
250	 67.14	0	266228..266866	-	212	78061103	-	Bcep18194_B0251	-	TetR family transcriptional regulator
251	 68.01	0	267086..268276	+	396	78061104	-	Bcep18194_B0252	-	peptidase M20D, amidohydrolase
252	 68.62	0	268335..269666	+	443	78061105	-	Bcep18194_B0253	-	major facilitator transporter
253	 69.60	0	269713..270633	-	306	78061106	-	Bcep18194_B0254	-	LysR family transcriptional regulator
254	 66.02	0	270770..271543	+	257	78061107	-	Bcep18194_B0255	-	extracellular solute-binding protein
255	 68.46	0	271603..272718	+	371	78061108	-	Bcep18194_B0256	-	succinylglutamate desuccinylase/aspartoacylase
256	 66.97	0	272896..273891	-	331	78061109	-	Bcep18194_B0257	-	LysR family transcriptional regulator
257	 66.97	0	273986..274966	+	326	78061110	-	Bcep18194_B0258	-	amidohydrolase 2
258	 69.26	0	275205..276554	+	449	78061111	-	Bcep18194_B0259	-	major facilitator transporter
259	 68.45	0	276595..277716	+	373	78061112	-	Bcep18194_B0260	-	outer membrane protein (porin)
260	 58.82	-2	278069..279139	+	356	78061113	-	Bcep18194_B0261	-	hypothetical protein
261	 67.03	0	279160..279987	-	275	78061114	-	Bcep18194_B0262	-	IclR family transcriptional regulator
262	 69.08	0	280176..281378	+	400	78061115	-	Bcep18194_B0263	-	beta-ketoadipyl CoA thiolase
263	 68.66	0	281468..281968	-	166	78061116	-	Bcep18194_B0264	-	hypothetical protein
264	 69.16	0	282078..282638	-	186	78061117	-	Bcep18194_B0265	-	GCN5-related N-acetyltransferase
265	 66.43	0	282635..283492	-	285	78061118	-	Bcep18194_B0266	-	hypothetical protein
266	 68.03	0	283817..285361	+	514	78061119	-	Bcep18194_B0267	-	methyl-accepting chemotaxis sensory transducer
267	 67.06	0	285775..287319	+	514	78061120	-	Bcep18194_B0268	-	methyl-accepting chemotaxis sensory transducer
268	 60.28	-1	287438..288016	-	192	78061121	-	Bcep18194_B0269	-	stress protein
269	 63.72	0	288049..288624	-	191	78061122	-	Bcep18194_B0270	-	stress protein
270	 60.14	-1	288653..289648	-	331	78061123	-	Bcep18194_B0271	-	integral membrane protein TerC
271	 57.56	-2	289696..290145	-	149	78061124	-	Bcep18194_B0272	-	tellurite resistance TerB
272	 62.53	-1	290194..291402	-	402	78061125	-	Bcep18194_B0273	-	stress protein
273	 62.29	-1	291399..291992	-	197	78061126	-	Bcep18194_B0274	-	stress protein
274	 63.72	0	292252..293202	-	316	78061127	-	Bcep18194_B0275	-	citrate lyase beta subunit-like
275	 64.93	0	293199..294293	-	364	78061128	-	Bcep18194_B0276	-	hypothetical protein
276	 66.93	0	294286..295044	-	252	78061129	-	Bcep18194_B0277	-	hypothetical protein
277	 65.07	0	295034..296161	-	375	78061130	-	Bcep18194_B0278	-	hypothetical protein
278	 67.07	0	296617..298086	-	489	78061131	-	Bcep18194_B0279	-	succinate semialdehyde dehydrogenase
279	 66.82	0	298179..299468	-	429	78061132	-	Bcep18194_B0280	-	4-aminobutyrate aminotransferase
280	 70.44	0	299589..301100	+	503	78061133	-	Bcep18194_B0281	-	GntR family transcriptional regulator
281	 67.81	0	301223..302713	-	496	78061134	-	Bcep18194_B0282	-	C4-dicarboxylate anaerobic carrier
282	 69.38	0	302743..303516	-	257	78061135	-	Bcep18194_B0283	-	IclR family transcriptional regulator
283	 69.67	0	303513..304412	-	299	78061136	-	Bcep18194_B0284	-	N-formylglutamate amidohydrolase
284	 66.76	0	304762..305865	+	367	78061137	-	Bcep18194_B0285	-	outer membrane protein (porin)
285	 69.61	0	305899..306780	-	293	78061138	-	Bcep18194_B0286	-	hypothetical protein
286	 70.86	+1	306842..307915	+	357	78061139	-	Bcep18194_B0287	-	selenophosphate synthetase
287	 69.04	0	307988..308578	+	196	78061140	-	Bcep18194_B0288	-	lysine exporter protein LysE/YggA
288	 66.48	0	308826..309905	+	359	78061141	-	Bcep18194_B0289	-	purine nucleoside transporter
289	 59.26	-2	310000..310755	-	251	78061142	-	Bcep18194_B0290	-	hypothetical protein
290	 57.86	-2	310769..311404	-	211	78061143	-	Bcep18194_B0291	-	hypothetical protein
291	 67.01	0	312060..312353	-	97	78061144	-	Bcep18194_B0292	-	hypothetical protein
292	 63.88	0	312781..313785	-	334	78061145	-	Bcep18194_B0293	-	LysR family transcriptional regulator
293	 66.78	0	313960..314820	+	286	78061146	-	Bcep18194_B0294	-	esterase/lipase/thioesterase
294	 68.72	0	314853..316070	+	405	78061147	-	Bcep18194_B0295	-	HlyD family secretion protein
295	 64.92	0	316116..319316	+	1066	78061148	-	Bcep18194_B0296	-	hydrophobe/amphiphile efflux pump, HAE1
296	 70.38	0	319327..320862	+	511	78061149	-	Bcep18194_B0297	-	RND efflux system outer membrane lipoprotein
297	 68.34	0	320956..321552	-	198	78061150	-	Bcep18194_B0298	-	TetR family transcriptional regulator
298	 67.36	0	321678..322109	+	143	78061151	-	Bcep18194_B0299	-	hypothetical protein
299	 69.14	0	322175..323065	-	296	78061152	-	Bcep18194_B0300	-	LysR family transcriptional regulator
300	 63.11	-1	323165..323614	+	149	78061153	-	Bcep18194_B0301	-	transmembrane protein
301	 67.27	0	323965..326118	+	717	78061154	-	Bcep18194_B0302	-	phosphoesterase
302	 70.67	+1	326115..326714	+	199	78061155	-	Bcep18194_B0303	-	hypothetical protein
303	 66.90	0	326795..327646	-	283	78061156	-	Bcep18194_B0304	-	Alpha/beta hydrolase
304	 66.39	0	327917..328282	-	121	78061157	-	Bcep18194_B0305	-	hypothetical protein
305	 68.21	0	328269..329630	-	453	78061158	-	Bcep18194_B0306	-	two component, sigma54 specific, Fis family transcriptional regulator
306	 70.22	0	329620..331503	-	627	78061159	-	Bcep18194_B0307	-	periplasmic sensor signal transduction histidine kinase
307	 66.01	0	331631..332995	-	454	78061160	-	Bcep18194_B0308	-	citrate carrier protein
308	 64.62	0	333418..334248	+	276	78061161	-	Bcep18194_B0309	-	NLPA lipoprotein
309	 67.94	0	334259..335671	+	470	78061162	-	Bcep18194_B0310	-	flavin-dependent oxidoreductase
310	 71.26	+1	335690..336886	+	398	78061163	-	Bcep18194_B0311	-	ABC metal ion transporter, ATPase subunit
311	 69.10	0	336879..337535	+	218	78061164	-	Bcep18194_B0312	-	ABC metal ion transporter, inner membrane subunit
312	 67.14	0	337590..338432	+	280	78061165	-	Bcep18194_B0313	-	hypothetical protein
313	 71.29	+1	338429..339640	+	403	78061166	-	Bcep18194_B0314	-	Acyl-CoA dehydrogenase-like
314	 66.67	0	339657..340478	-	273	78061167	-	Bcep18194_B0315	-	hypothetical protein
315	 67.53	0	340629..341900	+	423	78061168	-	Bcep18194_B0316	-	cobalamin synthesis protein/P47K
316	 71.19	+1	341929..342879	+	316	78061169	-	Bcep18194_B0317	-	putative GTP cyclohydrolase
317	 64.77	0	342873..343451	+	192	78061170	-	Bcep18194_B0318	-	6-pyruvoyl-tetrahydropterin synthase-like
318	 65.24	0	343451..344011	+	186	78061171	-	Bcep18194_B0319	-	carbonic anhydrase
319	 69.86	0	344015..345391	+	458	78061172	-	Bcep18194_B0320	-	dihydroorotase
320	 61.29	-1	345388..345852	-	154	78061173	-	Bcep18194_B0321	-	AsnC family transcriptional regulator
321	 66.67	0	346007..346636	+	209	78061174	-	Bcep18194_B0322	-	lysine exporter protein LysE/YggA
322	 68.93	0	346735..348504	-	589	78061175	-	Bcep18194_B0323	-	YadA-like haemagluttinin
323	 71.26	+1	348892..349740	-	282	78061176	-	Bcep18194_B0324	-	XRE family transcriptional regulator
324	 67.81	0	349936..350898	+	320	78061177	-	Bcep18194_B0325	-	uncharacterized membrane-anchored protein
325	 66.39	0	350895..351620	+	241	78061178	-	Bcep18194_B0326	-	peptidase M50
326	 67.25	0	351699..353078	-	459	78061179	-	Bcep18194_B0327	-	D-galactonate transporter
327	 72.12	+1	353326..354903	+	525	78061180	-	Bcep18194_B0328	-	2,5-dioxopentanoate dehydrogenase (NAD+)
328	 65.05	0	355050..355421	-	123	78061181	-	Bcep18194_B0329	-	PilT protein-like
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.