IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2617	 65.17	0	2980344..2981276	-	310	78063470	-	Bcep18194_B2623	-	hypothetical protein
2618	 66.67	0	2981415..2981636	-	73	78063471	-	Bcep18194_B2624	-	XRE family transcriptional regulator
2619	 69.76	0	2981645..2982583	-	312	78063472	-	Bcep18194_B2625	-	Serine O-acetyltransferase
2620	 69.00	0	2982612..2983082	-	156	78063473	-	Bcep18194_B2626	-	rhodanese-like protein
2621	 70.66	+1	2983510..2984910	-	466	78063474	-	Bcep18194_B2627	-	amidase
2622	 67.80	0	2984987..2985778	-	263	78063475	-	Bcep18194_B2628	-	hypothetical protein
2623	 68.12	0	2985862..2986206	-	114	78063476	-	Bcep18194_B2629	-	hypothetical protein
2624	 69.60	0	2986510..2987055	-	181	78063477	-	Bcep18194_B2630	-	hypothetical protein
2625	 68.20	0	2987055..2988098	-	347	78063478	-	Bcep18194_B2631	-	Alpha/beta hydrolase
2626	 63.53	0	2988367..2988621	-	84	78063479	-	Bcep18194_B2632	-	hypothetical protein
2627	 67.85	0	2988650..2989828	-	392	78063480	-	Bcep18194_B2633	-	acetate kinase
2628	 67.09	0	2989833..2990771	-	312	78063481	-	Bcep18194_B2634	-	phosphate acetyltransferase
2629	 66.50	0	2990790..2993138	-	782	78063482	-	Bcep18194_B2635	-	hypothetical protein
2630	 68.15	0	2993200..2994009	-	269	78063483	-	Bcep18194_B2636	-	enoyl-(acyl carrier protein) reductase
2631	 46.59	-2	2994049..2994297	+	82	78063484	-	Bcep18194_B2637	-	hypothetical protein
2632	 61.40	-1	2994430..2994771	-	113	78063485	-	Bcep18194_B2638	-	hypothetical protein
2633	 64.70	0	2994813..2996234	-	473	78063486	-	Bcep18194_B2639	-	hypothetical protein
2634	 66.14	0	2996360..2997307	+	315	78063487	-	Bcep18194_B2640	-	LysR family transcriptional regulator
2635	 64.98	0	2997879..2998766	+	295	78063488	-	Bcep18194_B2641	-	Citryl-CoA lyase
2636	 62.12	-1	2998799..2999260	+	153	78063489	-	Bcep18194_B2642	-	MaoC-like dehydratase
2637	 63.84	0	2999283..3000449	+	388	78063490	-	Bcep18194_B2643	-	Acyl-CoA dehydrogenase
2638	 64.97	0	3000580..3001818	+	412	78063491	-	Bcep18194_B2644	-	L-carnitine dehydratase/bile acid-inducible protein F
2639	 69.49	0	3001821..3002987	+	388	78063492	-	Bcep18194_B2645	-	L-carnitine dehydratase/bile acid-inducible protein F
2640	 64.89	0	3002980..3003261	-	93	78063493	-	Bcep18194_B2646	-	hypothetical protein
2641	 65.30	0	3003272..3004666	+	464	78063494	-	Bcep18194_B2647	-	major facilitator transporter
2642	 66.35	0	3004762..3006039	-	425	78063495	-	Bcep18194_B2648	-	epoxide hydrolase-like
2643	 67.72	0	3006244..3007002	-	252	78063496	-	Bcep18194_B2649	-	Short-chain dehydrogenase/reductase SDR
2644	 70.10	0	3007083..3008015	+	310	78063497	-	Bcep18194_B2650	-	LysR family transcriptional regulator
2645	 64.54	0	3008049..3008330	+	93	78063498	-	Bcep18194_B2651	-	hypothetical protein
2646	 66.16	0	3008366..3008953	-	195	78063499	-	Bcep18194_B2652	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2647	 67.19	0	3009049..3009240	-	63	78063500	-	Bcep18194_B2653	-	hypothetical protein
2648	 68.94	0	3009253..3010527	-	424	78063501	-	Bcep18194_B2654	-	aminotransferase, class I and II
2649	 68.63	0	3010769..3011737	-	322	78063502	-	Bcep18194_B2655	-	hypothetical protein
2650	 59.23	-2	3011844..3013484	-	546	78063503	-	Bcep18194_B2656	-	hypothetical protein
2651	 56.86	-2	3013497..3013802	-	101	78063504	-	Bcep18194_B2657	-	hypothetical protein
2652	 56.35	-2	3014024..3014275	+	83	78063505	-	Bcep18194_B2658	-	hypothetical protein
2653	 62.33	-1	3014764..3016725	+	653	78063506	-	Bcep18194_B2659	-	putative glycosyltransferase
2654	 65.55	0	3016722..3018416	+	564	78063507	-	Bcep18194_B2660	-	hypothetical protein
2655	 58.72	-2	3018457..3019425	-	322	78063508	-	Bcep18194_B2661	-	hypothetical protein
2656	 66.50	0	3019843..3022191	-	782	78063509	-	Bcep18194_B2662	-	malic enzyme
2657	 67.59	0	3022280..3023251	+	323	78063510	-	Bcep18194_B2663	-	LysR family transcriptional regulator
2658	 64.16	0	3023344..3024021	-	225	78063511	-	Bcep18194_B2664	-	hypothetical protein
2659	 68.07	0	3024128..3026047	-	639	78063512	-	Bcep18194_B2665	-	MerR family transcriptional regulator
2660	 61.01	-1	3026146..3026640	-	164	78063513	-	Bcep18194_B2666	-	GCN5-related N-acetyltransferase
2661	 58.39	-2	3026749..3027195	-	148	78063514	-	Bcep18194_B2667	-	hypothetical protein
2662	 62.87	-1	3027480..3027848	-	122	78063515	-	Bcep18194_B2668	-	glyoxalase/bleomycin resistance protein/dioxygenase
2663	 67.09	0	3027908..3028609	+	233	78063516	-	Bcep18194_B2669	-	hypothetical protein
2664	 64.70	0	3028952..3029866	-	304	78063517	-	Bcep18194_B2670	-	Alpha/beta hydrolase
2665	 67.82	0	3029954..3030820	-	288	78063518	-	Bcep18194_B2671	-	AraC family transcriptional regulator
2666	 57.52	-2	3031088..3031546	+	152	78063519	-	Bcep18194_B2672	-	GCN5-related N-acetyltransferase
2667	 64.27	0	3031684..3032895	-	403	78063520	-	Bcep18194_B2673	-	major facilitator transporter
2668	 66.02	0	3033034..3033966	+	310	78063521	-	Bcep18194_B2674	-	LysR family transcriptional regulator
2669	 62.68	-1	3034346..3035473	-	375	78063522	-	Bcep18194_B2675	-	aminotransferase, class V
2670	 69.71	0	3035839..3037020	+	393	78063523	-	Bcep18194_B2676	-	Beta-lactamase
2671	 66.07	0	3037130..3038302	-	390	78063524	-	Bcep18194_B2677	-	FAD dependent oxidoreductase
2672	 66.32	0	3038498..3039649	-	383	78063525	-	Bcep18194_B2678	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
2673	 65.62	0	3040069..3040260	-	63	78063526	-	Bcep18194_B2679	-	hypothetical protein
2674	 68.48	0	3040401..3041945	-	514	78063527	-	Bcep18194_B2680	-	LuxR family transcriptional regulator
2675	 69.88	0	3042162..3042503	+	113	78063528	-	Bcep18194_B2681	-	hypothetical protein
2676	 67.52	0	3042559..3042909	+	116	78063529	-	Bcep18194_B2682	-	transport-associated protein
2677	 61.11	-1	3042966..3043163	+	65	78063530	-	Bcep18194_B2683	-	hypothetical protein
2678	 65.32	0	3043372..3043593	+	73	78063531	-	Bcep18194_B2684	-	hypothetical protein
2679	 61.57	-1	3043718..3043972	+	84	78063532	-	Bcep18194_B2685	-	transglycosylase-associated protein
2680	 57.63	-2	3044037..3044390	-	117	78063533	-	Bcep18194_B2686	-	hypothetical protein
2681	 63.25	-1	3044449..3044829	-	126	78063534	-	Bcep18194_B2687	-	hypothetical protein
2682	 68.37	0	3044924..3046507	+	527	78063535	-	Bcep18194_B2688	-	hypothetical protein
2683	 66.18	0	3046479..3047507	-	342	78063536	-	Bcep18194_B2689	-	hypothetical protein
2684	 67.19	0	3047734..3048684	+	316	78063537	-	Bcep18194_B2690	-	LysR family transcriptional regulator
2685	 64.75	0	3048796..3049161	-	121	78063538	-	Bcep18194_B2691	-	hypothetical protein
2686	 68.71	0	3049305..3050330	-	341	78063539	-	Bcep18194_B2692	-	ankyrin
2687	 64.58	0	3050955..3052583	+	542	78063540	-	Bcep18194_B2693	-	aldehyde dehydrogenase
2688	 66.84	0	3052651..3053817	-	388	78063541	-	Bcep18194_B2694	-	peptidase M24
2689	 68.17	0	3053950..3055278	-	442	78063542	-	Bcep18194_B2695	-	major facilitator transporter
2690	 67.29	0	3055550..3056518	+	322	78063543	-	Bcep18194_B2696	-	LysR family transcriptional regulator
2691	 68.88	0	3056543..3057175	-	210	78063544	-	Bcep18194_B2697	-	lysine exporter protein LysE/YggA
2692	 62.65	-1	3057772..3058095	+	107	78063545	-	Bcep18194_B2698	-	hypothetical protein
2693	 66.24	0	3058189..3058422	+	77	78063546	-	Bcep18194_B2699	-	hypothetical protein
2694	 69.23	0	3058419..3058964	+	181	78063547	-	Bcep18194_B2700	-	hypothetical protein
2695	 69.23	0	3059009..3059554	+	181	78063548	-	Bcep18194_B2701	-	hypothetical protein
2696	 71.72	+1	3059797..3061260	+	487	78063549	-	Bcep18194_B2702	-	peptidase
2697	 75.23	+2	3061238..3061681	+	147	78063550	-	Bcep18194_B2703	-	hypothetical protein
2698	 66.52	0	3061855..3063957	+	700	78063551	-	Bcep18194_B2704	-	TonB-dependent receptor
2699	 66.38	0	3064011..3066128	+	705	78063552	-	Bcep18194_B2705	-	TonB-dependent siderophore receptor
2700	 66.94	0	3066205..3066570	-	121	78063553	-	Bcep18194_B2706	-	copper resistance protein CopC
2701	 65.36	0	3066587..3067504	-	305	78063554	-	Bcep18194_B2707	-	hypothetical protein
2702	 65.89	0	3067614..3067997	-	127	78063555	-	Bcep18194_B2708	-	hypothetical protein
2703	 69.80	0	3068191..3069435	-	414	78063556	-	Bcep18194_B2709	-	NADH-flavin oxidoreductase/NADH oxidase
2704	 68.15	0	3069513..3069983	+	156	78063557	-	Bcep18194_B2710	-	MerR family transcriptional regulator
2705	 67.67	0	3070093..3070791	+	232	78063558	-	Bcep18194_B2711	-	hypothetical protein
2706	 68.59	0	3070881..3072440	-	519	78063559	-	Bcep18194_B2712	-	hypothetical protein
2707	 67.43	0	3072662..3073312	-	216	78063560	-	Bcep18194_B2713	-	two component LuxR family transcriptional regulator
2708	 68.94	0	3073316..3075160	-	614	78063561	-	Bcep18194_B2714	-	putative signal transduction histidine kinase
2709	 66.67	0	3075298..3075618	+	106	78063562	-	Bcep18194_B2715	-	hypothetical protein
2710	 66.79	0	3075638..3076474	-	278	78063563	-	Bcep18194_B2716	-	NAD-dependent epimerase/dehydratase
2711	 67.47	0	3076667..3077659	+	330	78063564	-	Bcep18194_B2717	-	LacI family transcription regulator
2712	 67.75	0	3077754..3079046	-	430	78063565	-	Bcep18194_B2718	-	major facilitator transporter
2713	 70.17	0	3079368..3080852	+	494	78063566	-	Bcep18194_B2719	-	transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase
2714	 67.23	0	3080849..3081382	+	177	78063567	-	Bcep18194_B2720	-	methylated-DNA--(protein)-cysteine S-methyltransferase
2715	 68.86	0	3081402..3082220	-	272	78063568	-	Bcep18194_B2721	-	AraC family transcriptional regulator
2716	 67.13	0	3082298..3083155	+	285	78063569	-	Bcep18194_B2722	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.