IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2574	 63.30	-1	2935280..2935606	-	108	78063427	-	Bcep18194_B2580	-	hypothetical protein
2575	 69.91	0	2935672..2936658	-	328	78063428	-	Bcep18194_B2581	-	hypothetical protein
2576	 68.52	0	2936652..2937461	-	269	78063429	-	Bcep18194_B2582	-	NLPA lipoprotein
2577	 71.05	+1	2937458..2938507	-	349	78063430	-	Bcep18194_B2583	-	hypothetical protein
2578	 67.43	0	2938524..2940482	-	652	78063431	-	Bcep18194_B2584	-	sulfatase
2579	 67.92	0	2940695..2941414	-	239	78063432	-	Bcep18194_B2585	-	short chain dehydrogenase
2580	 65.51	0	2941874..2942479	+	201	78063433	-	Bcep18194_B2586	-	hypothetical protein
2581	 62.33	-1	2942510..2942947	+	145	78063434	-	Bcep18194_B2587	-	hypothetical protein
2582	 64.54	0	2942973..2943911	+	312	78063435	-	Bcep18194_B2588	-	curli production assembly/transport component CsgG
2583	 68.32	0	2943941..2944483	+	180	78063436	-	Bcep18194_B2589	-	hypothetical protein
2584	 63.17	-1	2944615..2945988	+	457	78063437	-	Bcep18194_B2590	-	curlin associated protein
2585	 67.29	0	2946060..2946380	+	106	78063438	-	Bcep18194_B2591	-	hypothetical protein
2586	 70.02	0	2946463..2947863	-	466	78063439	-	Bcep18194_B2592	-	major facilitator transporter
2587	 70.02	0	2947975..2948868	-	297	78063440	-	Bcep18194_B2593	-	hypothetical protein
2588	 73.03	+1	2949101..2950012	-	303	78063441	-	Bcep18194_B2594	-	LysR family transcriptional regulator
2589	 69.12	0	2950139..2951158	+	339	78063442	-	Bcep18194_B2595	-	zinc-containing alcohol dehydrogenase superfamily protein
2590	 66.41	0	2951212..2952396	-	394	78063443	-	Bcep18194_B2596	-	outer membrane protein (porin)
2591	 66.54	0	2952449..2953237	-	262	78063444	-	Bcep18194_B2597	-	ABC amino acid transporter, periplasmic ligand binding protein
2592	 69.10	0	2953288..2954478	-	396	78063445	-	Bcep18194_B2598	-	peptidase M20D, amidohydrolase
2593	 67.71	0	2954594..2955553	+	319	78063446	-	Bcep18194_B2599	-	LysR family transcriptional regulator
2594	 66.37	0	2955623..2957944	-	773	78063447	-	Bcep18194_B2600	-	TonB-dependent receptor
2595	 70.23	0	2958136..2959257	-	373	78063448	-	Bcep18194_B2601	-	major facilitator transporter
2596	 70.57	+1	2959350..2960426	-	358	78063449	-	Bcep18194_B2602	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2597	 67.88	0	2960461..2960871	-	136	78063450	-	Bcep18194_B2603	-	biopolymer transport protein ExbD/TolR
2598	 70.71	+1	2960871..2961587	-	238	78063451	-	Bcep18194_B2604	-	MotA/TolQ/ExbB proton channel
2599	 76.03	+2	2961629..2962450	-	273	78063452	-	Bcep18194_B2605	-	TonB-like protein
2600	 69.25	0	2962484..2963530	-	348	78063453	-	Bcep18194_B2606	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2601	 69.99	0	2963581..2964753	-	390	78063454	-	Bcep18194_B2607	-	alkanesulfonate monooxygenase
2602	 69.55	0	2965209..2966285	+	358	78063455	-	Bcep18194_B2608	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2603	 69.74	0	2966317..2967423	+	368	78063456	-	Bcep18194_B2609	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2604	 71.08	+1	2967423..2968238	+	271	78063457	-	Bcep18194_B2610	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2605	 70.85	+1	2968255..2969043	+	262	78063458	-	Bcep18194_B2611	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2606	 69.17	0	2969034..2970152	-	372	78063459	-	Bcep18194_B2612	-	sigma-54 dependent trancsriptional regulator
2607	 69.02	0	2970273..2970953	-	226	78063460	-	Bcep18194_B2613	-	class II aldolase/adducin-like
2608	 70.48	0	2971342..2972625	+	427	78063461	-	Bcep18194_B2614	-	secretory lipase
2609	 64.60	0	2972768..2973058	+	96	78063462	groES	Bcep18194_B2615	-	co-chaperonin GroES
2610	 66.36	0	2973071..2974711	+	546	78063463	groEL	Bcep18194_B2616	-	chaperonin GroEL
2611	 70.41	0	2974897..2975511	+	204	78063464	-	Bcep18194_B2617	-	lysine exporter protein LysE/YggA
2612	 65.86	0	2976054..2976425	+	123	78063465	-	Bcep18194_B2618	-	hypothetical protein
2613	 67.12	0	2976484..2976702	+	72	78063466	-	Bcep18194_B2619	-	hypothetical protein
2614	 68.01	0	2976835..2977356	+	173	78063467	-	Bcep18194_B2620	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
2615	 68.79	0	2977416..2978309	+	297	78063468	-	Bcep18194_B2621	-	acetylglutamate kinase-like
2616	 69.77	0	2978369..2980369	-	666	78063469	-	Bcep18194_B2622	-	cysteine desulphurases, SufS
2617	 65.17	0	2980344..2981276	-	310	78063470	-	Bcep18194_B2623	-	hypothetical protein
2618	 66.67	0	2981415..2981636	-	73	78063471	-	Bcep18194_B2624	-	XRE family transcriptional regulator
2619	 69.76	0	2981645..2982583	-	312	78063472	-	Bcep18194_B2625	-	Serine O-acetyltransferase
2620	 69.00	0	2982612..2983082	-	156	78063473	-	Bcep18194_B2626	-	rhodanese-like protein
2621	 70.66	+1	2983510..2984910	-	466	78063474	-	Bcep18194_B2627	-	amidase
2622	 67.80	0	2984987..2985778	-	263	78063475	-	Bcep18194_B2628	-	hypothetical protein
2623	 68.12	0	2985862..2986206	-	114	78063476	-	Bcep18194_B2629	-	hypothetical protein
2624	 69.60	0	2986510..2987055	-	181	78063477	-	Bcep18194_B2630	-	hypothetical protein
2625	 68.20	0	2987055..2988098	-	347	78063478	-	Bcep18194_B2631	-	Alpha/beta hydrolase
2626	 63.53	0	2988367..2988621	-	84	78063479	-	Bcep18194_B2632	-	hypothetical protein
2627	 67.85	0	2988650..2989828	-	392	78063480	-	Bcep18194_B2633	-	acetate kinase
2628	 67.09	0	2989833..2990771	-	312	78063481	-	Bcep18194_B2634	-	phosphate acetyltransferase
2629	 66.50	0	2990790..2993138	-	782	78063482	-	Bcep18194_B2635	-	hypothetical protein
2630	 68.15	0	2993200..2994009	-	269	78063483	-	Bcep18194_B2636	-	enoyl-(acyl carrier protein) reductase
2631	 46.59	-2	2994049..2994297	+	82	78063484	-	Bcep18194_B2637	-	hypothetical protein
2632	 61.40	-1	2994430..2994771	-	113	78063485	-	Bcep18194_B2638	-	hypothetical protein
2633	 64.70	0	2994813..2996234	-	473	78063486	-	Bcep18194_B2639	-	hypothetical protein
2634	 66.14	0	2996360..2997307	+	315	78063487	-	Bcep18194_B2640	-	LysR family transcriptional regulator
2635	 64.98	0	2997879..2998766	+	295	78063488	-	Bcep18194_B2641	-	Citryl-CoA lyase
2636	 62.12	-1	2998799..2999260	+	153	78063489	-	Bcep18194_B2642	-	MaoC-like dehydratase
2637	 63.84	0	2999283..3000449	+	388	78063490	-	Bcep18194_B2643	-	Acyl-CoA dehydrogenase
2638	 64.97	0	3000580..3001818	+	412	78063491	-	Bcep18194_B2644	-	L-carnitine dehydratase/bile acid-inducible protein F
2639	 69.49	0	3001821..3002987	+	388	78063492	-	Bcep18194_B2645	-	L-carnitine dehydratase/bile acid-inducible protein F
2640	 64.89	0	3002980..3003261	-	93	78063493	-	Bcep18194_B2646	-	hypothetical protein
2641	 65.30	0	3003272..3004666	+	464	78063494	-	Bcep18194_B2647	-	major facilitator transporter
2642	 66.35	0	3004762..3006039	-	425	78063495	-	Bcep18194_B2648	-	epoxide hydrolase-like
2643	 67.72	0	3006244..3007002	-	252	78063496	-	Bcep18194_B2649	-	Short-chain dehydrogenase/reductase SDR
2644	 70.10	0	3007083..3008015	+	310	78063497	-	Bcep18194_B2650	-	LysR family transcriptional regulator
2645	 64.54	0	3008049..3008330	+	93	78063498	-	Bcep18194_B2651	-	hypothetical protein
2646	 66.16	0	3008366..3008953	-	195	78063499	-	Bcep18194_B2652	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2647	 67.19	0	3009049..3009240	-	63	78063500	-	Bcep18194_B2653	-	hypothetical protein
2648	 68.94	0	3009253..3010527	-	424	78063501	-	Bcep18194_B2654	-	aminotransferase, class I and II
2649	 68.63	0	3010769..3011737	-	322	78063502	-	Bcep18194_B2655	-	hypothetical protein
2650	 59.23	-2	3011844..3013484	-	546	78063503	-	Bcep18194_B2656	-	hypothetical protein
2651	 56.86	-2	3013497..3013802	-	101	78063504	-	Bcep18194_B2657	-	hypothetical protein
2652	 56.35	-2	3014024..3014275	+	83	78063505	-	Bcep18194_B2658	-	hypothetical protein
2653	 62.33	-1	3014764..3016725	+	653	78063506	-	Bcep18194_B2659	-	putative glycosyltransferase
2654	 65.55	0	3016722..3018416	+	564	78063507	-	Bcep18194_B2660	-	hypothetical protein
2655	 58.72	-2	3018457..3019425	-	322	78063508	-	Bcep18194_B2661	-	hypothetical protein
2656	 66.50	0	3019843..3022191	-	782	78063509	-	Bcep18194_B2662	-	malic enzyme
2657	 67.59	0	3022280..3023251	+	323	78063510	-	Bcep18194_B2663	-	LysR family transcriptional regulator
2658	 64.16	0	3023344..3024021	-	225	78063511	-	Bcep18194_B2664	-	hypothetical protein
2659	 68.07	0	3024128..3026047	-	639	78063512	-	Bcep18194_B2665	-	MerR family transcriptional regulator
2660	 61.01	-1	3026146..3026640	-	164	78063513	-	Bcep18194_B2666	-	GCN5-related N-acetyltransferase
2661	 58.39	-2	3026749..3027195	-	148	78063514	-	Bcep18194_B2667	-	hypothetical protein
2662	 62.87	-1	3027480..3027848	-	122	78063515	-	Bcep18194_B2668	-	glyoxalase/bleomycin resistance protein/dioxygenase
2663	 67.09	0	3027908..3028609	+	233	78063516	-	Bcep18194_B2669	-	hypothetical protein
2664	 64.70	0	3028952..3029866	-	304	78063517	-	Bcep18194_B2670	-	Alpha/beta hydrolase
2665	 67.82	0	3029954..3030820	-	288	78063518	-	Bcep18194_B2671	-	AraC family transcriptional regulator
2666	 57.52	-2	3031088..3031546	+	152	78063519	-	Bcep18194_B2672	-	GCN5-related N-acetyltransferase
2667	 64.27	0	3031684..3032895	-	403	78063520	-	Bcep18194_B2673	-	major facilitator transporter
2668	 66.02	0	3033034..3033966	+	310	78063521	-	Bcep18194_B2674	-	LysR family transcriptional regulator
2669	 62.68	-1	3034346..3035473	-	375	78063522	-	Bcep18194_B2675	-	aminotransferase, class V
2670	 69.71	0	3035839..3037020	+	393	78063523	-	Bcep18194_B2676	-	Beta-lactamase
2671	 66.07	0	3037130..3038302	-	390	78063524	-	Bcep18194_B2677	-	FAD dependent oxidoreductase
2672	 66.32	0	3038498..3039649	-	383	78063525	-	Bcep18194_B2678	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
2673	 65.62	0	3040069..3040260	-	63	78063526	-	Bcep18194_B2679	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.