IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2540	 72.28	+1	2896561..2897094	-	177	78063393	-	Bcep18194_B2546	-	hypothetical protein
2541	 65.45	0	2897345..2897836	-	163	78063394	-	Bcep18194_B2547	-	BadM/Rrf2 family transcriptional regulator
2542	 69.40	0	2897932..2898846	+	304	78063395	-	Bcep18194_B2548	-	FAD dependent oxidoreductase
2543	 62.69	-1	2898874..2899728	-	284	78063396	-	Bcep18194_B2549	-	hypothetical protein
2544	 68.19	0	2899887..2901332	-	481	78063397	-	Bcep18194_B2550	-	major facilitator transporter
2545	 70.69	+1	2901349..2902491	-	380	78063398	-	Bcep18194_B2551	-	Iron-containing alcohol dehydrogenase
2546	 68.84	0	2902713..2903588	-	291	78063399	-	Bcep18194_B2552	-	LysR family transcriptional regulator
2547	 68.85	0	2903718..2904677	+	319	78063400	-	Bcep18194_B2553	-	LysR family transcriptional regulator
2548	 69.91	0	2904857..2905936	+	359	78063401	-	Bcep18194_B2554	-	alanine racemase-like
2549	 69.55	0	2906046..2907017	+	323	78063402	-	Bcep18194_B2555	-	ornithine cyclodeaminase
2550	 65.98	0	2907040..2907762	+	240	78063403	-	Bcep18194_B2556	-	HAD family hydrolase
2551	 63.92	0	2907893..2908510	-	205	78063404	-	Bcep18194_B2557	-	glutathione S-transferase-like protein
2552	 66.40	0	2908599..2908967	-	122	78063405	-	Bcep18194_B2558	-	hypothetical protein
2553	 67.52	0	2909049..2909516	+	155	78063406	-	Bcep18194_B2559	-	MarR family transcriptional regulator
2554	 70.08	0	2909653..2910414	+	253	78063407	-	Bcep18194_B2560	-	PEP phosphonomutase
2555	 67.56	0	2910547..2911104	+	185	78063408	-	Bcep18194_B2561	-	carboxymuconolactone decarboxylase
2556	 68.44	0	2911153..2911998	+	281	78063409	-	Bcep18194_B2562	-	XRE family transcriptional regulator
2557	 71.12	+1	2912029..2913240	-	403	78063410	-	Bcep18194_B2563	-	major facilitator transporter
2558	 70.19	0	2913311..2914360	+	349	78063411	-	Bcep18194_B2564	-	AraC family transcriptional regulator
2559	 64.69	0	2914469..2914771	-	100	78063412	-	Bcep18194_B2565	-	hypothetical protein
2560	 69.92	0	2914785..2916692	-	635	78063413	-	Bcep18194_B2566	-	hypothetical protein
2561	 62.37	-1	2917067..2917252	+	61	78063414	-	Bcep18194_B2567	-	hypothetical protein
2562	 68.12	0	2917329..2917604	+	91	78063415	-	Bcep18194_B2568	-	hypothetical protein
2563	 69.16	0	2917931..2918251	-	106	78063416	-	Bcep18194_B2569	-	hypothetical protein
2564	 68.97	0	2918562..2919038	-	158	78063417	-	Bcep18194_B2570	-	hypothetical protein
2565	 65.60	0	2919197..2921167	-	656	78063418	-	Bcep18194_B2571	-	amino acid transporter-like
2566	 63.77	0	2921644..2922507	+	287	78063419	-	Bcep18194_B2572	-	enoyl-CoA hydratase
2567	 66.07	0	2922556..2924559	-	667	78063420	-	Bcep18194_B2573	-	RNase II stability modulator
2568	 70.78	+1	2925124..2928774	-	1216	78063421	-	Bcep18194_B2574	-	5-oxoprolinase (ATP-hydrolyzing)
2569	 68.75	0	2928895..2930193	-	432	78063422	-	Bcep18194_B2575	-	major facilitator transporter
2570	 68.86	0	2930272..2931045	-	257	78063423	-	Bcep18194_B2576	-	hypothetical protein
2571	 68.38	0	2931257..2932189	+	310	78063424	-	Bcep18194_B2577	-	LysR family transcriptional regulator
2572	 67.77	0	2932208..2933290	+	360	78063425	-	Bcep18194_B2578	-	hypothetical protein
2573	 67.14	0	2933382..2935082	-	566	78063426	-	Bcep18194_B2579	-	hypothetical protein
2574	 63.30	-1	2935280..2935606	-	108	78063427	-	Bcep18194_B2580	-	hypothetical protein
2575	 69.91	0	2935672..2936658	-	328	78063428	-	Bcep18194_B2581	-	hypothetical protein
2576	 68.52	0	2936652..2937461	-	269	78063429	-	Bcep18194_B2582	-	NLPA lipoprotein
2577	 71.05	+1	2937458..2938507	-	349	78063430	-	Bcep18194_B2583	-	hypothetical protein
2578	 67.43	0	2938524..2940482	-	652	78063431	-	Bcep18194_B2584	-	sulfatase
2579	 67.92	0	2940695..2941414	-	239	78063432	-	Bcep18194_B2585	-	short chain dehydrogenase
2580	 65.51	0	2941874..2942479	+	201	78063433	-	Bcep18194_B2586	-	hypothetical protein
2581	 62.33	-1	2942510..2942947	+	145	78063434	-	Bcep18194_B2587	-	hypothetical protein
2582	 64.54	0	2942973..2943911	+	312	78063435	-	Bcep18194_B2588	-	curli production assembly/transport component CsgG
2583	 68.32	0	2943941..2944483	+	180	78063436	-	Bcep18194_B2589	-	hypothetical protein
2584	 63.17	-1	2944615..2945988	+	457	78063437	-	Bcep18194_B2590	-	curlin associated protein
2585	 67.29	0	2946060..2946380	+	106	78063438	-	Bcep18194_B2591	-	hypothetical protein
2586	 70.02	0	2946463..2947863	-	466	78063439	-	Bcep18194_B2592	-	major facilitator transporter
2587	 70.02	0	2947975..2948868	-	297	78063440	-	Bcep18194_B2593	-	hypothetical protein
2588	 73.03	+1	2949101..2950012	-	303	78063441	-	Bcep18194_B2594	-	LysR family transcriptional regulator
2589	 69.12	0	2950139..2951158	+	339	78063442	-	Bcep18194_B2595	-	zinc-containing alcohol dehydrogenase superfamily protein
2590	 66.41	0	2951212..2952396	-	394	78063443	-	Bcep18194_B2596	-	outer membrane protein (porin)
2591	 66.54	0	2952449..2953237	-	262	78063444	-	Bcep18194_B2597	-	ABC amino acid transporter, periplasmic ligand binding protein
2592	 69.10	0	2953288..2954478	-	396	78063445	-	Bcep18194_B2598	-	peptidase M20D, amidohydrolase
2593	 67.71	0	2954594..2955553	+	319	78063446	-	Bcep18194_B2599	-	LysR family transcriptional regulator
2594	 66.37	0	2955623..2957944	-	773	78063447	-	Bcep18194_B2600	-	TonB-dependent receptor
2595	 70.23	0	2958136..2959257	-	373	78063448	-	Bcep18194_B2601	-	major facilitator transporter
2596	 70.57	+1	2959350..2960426	-	358	78063449	-	Bcep18194_B2602	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2597	 67.88	0	2960461..2960871	-	136	78063450	-	Bcep18194_B2603	-	biopolymer transport protein ExbD/TolR
2598	 70.71	+1	2960871..2961587	-	238	78063451	-	Bcep18194_B2604	-	MotA/TolQ/ExbB proton channel
2599	 76.03	+2	2961629..2962450	-	273	78063452	-	Bcep18194_B2605	-	TonB-like protein
2600	 69.25	0	2962484..2963530	-	348	78063453	-	Bcep18194_B2606	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2601	 69.99	0	2963581..2964753	-	390	78063454	-	Bcep18194_B2607	-	alkanesulfonate monooxygenase
2602	 69.55	0	2965209..2966285	+	358	78063455	-	Bcep18194_B2608	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2603	 69.74	0	2966317..2967423	+	368	78063456	-	Bcep18194_B2609	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2604	 71.08	+1	2967423..2968238	+	271	78063457	-	Bcep18194_B2610	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2605	 70.85	+1	2968255..2969043	+	262	78063458	-	Bcep18194_B2611	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2606	 69.17	0	2969034..2970152	-	372	78063459	-	Bcep18194_B2612	-	sigma-54 dependent trancsriptional regulator
2607	 69.02	0	2970273..2970953	-	226	78063460	-	Bcep18194_B2613	-	class II aldolase/adducin-like
2608	 70.48	0	2971342..2972625	+	427	78063461	-	Bcep18194_B2614	-	secretory lipase
2609	 64.60	0	2972768..2973058	+	96	78063462	groES	Bcep18194_B2615	-	co-chaperonin GroES
2610	 66.36	0	2973071..2974711	+	546	78063463	groEL	Bcep18194_B2616	-	chaperonin GroEL
2611	 70.41	0	2974897..2975511	+	204	78063464	-	Bcep18194_B2617	-	lysine exporter protein LysE/YggA
2612	 65.86	0	2976054..2976425	+	123	78063465	-	Bcep18194_B2618	-	hypothetical protein
2613	 67.12	0	2976484..2976702	+	72	78063466	-	Bcep18194_B2619	-	hypothetical protein
2614	 68.01	0	2976835..2977356	+	173	78063467	-	Bcep18194_B2620	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
2615	 68.79	0	2977416..2978309	+	297	78063468	-	Bcep18194_B2621	-	acetylglutamate kinase-like
2616	 69.77	0	2978369..2980369	-	666	78063469	-	Bcep18194_B2622	-	cysteine desulphurases, SufS
2617	 65.17	0	2980344..2981276	-	310	78063470	-	Bcep18194_B2623	-	hypothetical protein
2618	 66.67	0	2981415..2981636	-	73	78063471	-	Bcep18194_B2624	-	XRE family transcriptional regulator
2619	 69.76	0	2981645..2982583	-	312	78063472	-	Bcep18194_B2625	-	Serine O-acetyltransferase
2620	 69.00	0	2982612..2983082	-	156	78063473	-	Bcep18194_B2626	-	rhodanese-like protein
2621	 70.66	+1	2983510..2984910	-	466	78063474	-	Bcep18194_B2627	-	amidase
2622	 67.80	0	2984987..2985778	-	263	78063475	-	Bcep18194_B2628	-	hypothetical protein
2623	 68.12	0	2985862..2986206	-	114	78063476	-	Bcep18194_B2629	-	hypothetical protein
2624	 69.60	0	2986510..2987055	-	181	78063477	-	Bcep18194_B2630	-	hypothetical protein
2625	 68.20	0	2987055..2988098	-	347	78063478	-	Bcep18194_B2631	-	Alpha/beta hydrolase
2626	 63.53	0	2988367..2988621	-	84	78063479	-	Bcep18194_B2632	-	hypothetical protein
2627	 67.85	0	2988650..2989828	-	392	78063480	-	Bcep18194_B2633	-	acetate kinase
2628	 67.09	0	2989833..2990771	-	312	78063481	-	Bcep18194_B2634	-	phosphate acetyltransferase
2629	 66.50	0	2990790..2993138	-	782	78063482	-	Bcep18194_B2635	-	hypothetical protein
2630	 68.15	0	2993200..2994009	-	269	78063483	-	Bcep18194_B2636	-	enoyl-(acyl carrier protein) reductase
2631	 46.59	-2	2994049..2994297	+	82	78063484	-	Bcep18194_B2637	-	hypothetical protein
2632	 61.40	-1	2994430..2994771	-	113	78063485	-	Bcep18194_B2638	-	hypothetical protein
2633	 64.70	0	2994813..2996234	-	473	78063486	-	Bcep18194_B2639	-	hypothetical protein
2634	 66.14	0	2996360..2997307	+	315	78063487	-	Bcep18194_B2640	-	LysR family transcriptional regulator
2635	 64.98	0	2997879..2998766	+	295	78063488	-	Bcep18194_B2641	-	Citryl-CoA lyase
2636	 62.12	-1	2998799..2999260	+	153	78063489	-	Bcep18194_B2642	-	MaoC-like dehydratase
2637	 63.84	0	2999283..3000449	+	388	78063490	-	Bcep18194_B2643	-	Acyl-CoA dehydrogenase
2638	 64.97	0	3000580..3001818	+	412	78063491	-	Bcep18194_B2644	-	L-carnitine dehydratase/bile acid-inducible protein F
2639	 69.49	0	3001821..3002987	+	388	78063492	-	Bcep18194_B2645	-	L-carnitine dehydratase/bile acid-inducible protein F
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.