IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2489	 67.97	0	2841282..2842202	-	306	78063342	-	Bcep18194_B2495	-	LysR family transcriptional regulator
2490	 65.03	0	2842342..2843625	+	427	78063343	-	Bcep18194_B2496	-	ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein
2491	 67.07	0	2843625..2844125	+	166	78063344	-	Bcep18194_B2497	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2492	 69.25	0	2844307..2844693	+	128	78063345	-	Bcep18194_B2498	-	4-oxalocrotonate tautomerase
2493	 69.86	0	2844771..2846336	-	521	78063346	-	Bcep18194_B2499	-	PAS/PAC sensor signal transduction histidine kinase
2494	 72.03	+1	2846493..2847686	+	397	78063347	-	Bcep18194_B2500	-	Acyl-CoA dehydrogenase-like
2495	 67.20	0	2847792..2848169	+	125	78063348	-	Bcep18194_B2501	-	hypothetical protein
2496	 71.07	+1	2848178..2848699	+	173	78063349	-	Bcep18194_B2502	-	hypothetical protein
2497	 69.69	0	2848731..2849855	+	374	78063350	-	Bcep18194_B2503	-	amidase
2498	 68.68	0	2849915..2850658	+	247	78063351	-	Bcep18194_B2504	-	Short-chain dehydrogenase/reductase SDR
2499	 66.67	0	2850765..2851397	-	210	78063352	-	Bcep18194_B2505	-	two component LuxR family transcriptional regulator
2500	 68.05	0	2851646..2852296	+	216	78063353	-	Bcep18194_B2506	-	4-hydroxyphenylacetate 3-monooxygenase, reductase component
2501	 71.85	+1	2852317..2853648	-	443	78063354	-	Bcep18194_B2507	-	hypothetical protein
2502	 68.46	0	2853813..2854370	-	185	78063355	-	Bcep18194_B2508	-	hypothetical protein
2503	 65.57	0	2854476..2854931	+	151	78063356	-	Bcep18194_B2509	-	AsnC family transcriptional regulator
2504	 66.35	0	2855486..2856439	+	317	78063357	-	Bcep18194_B2510	-	hypothetical protein
2505	 66.86	0	2856456..2856965	-	169	78063358	-	Bcep18194_B2511	-	GCN5-related N-acetyltransferase
2506	 70.35	0	2857021..2858052	-	343	78063359	-	Bcep18194_B2512	-	AraC family transcriptional regulator
2507	 70.05	0	2858380..2860095	+	571	78063360	-	Bcep18194_B2513	-	glucose-methanol-choline oxidoreductase
2508	 70.87	+1	2860082..2862532	+	816	78063361	-	Bcep18194_B2514	-	lipolytic protein
2509	 61.80	-1	2862745..2863299	+	184	78063362	-	Bcep18194_B2515	-	protein tyrosine phosphatase
2510	 60.96	-1	2863655..2863987	+	110	78063363	-	Bcep18194_B2516	-	hypothetical protein
2511	 69.70	0	2863984..2864313	+	109	78063364	-	Bcep18194_B2517	-	putative transcriptional regulator
2512	 72.31	+1	2864330..2866348	-	672	78063365	-	Bcep18194_B2518	-	DedA family membrane protein
2513	 71.52	+1	2866451..2866903	-	150	78063366	-	Bcep18194_B2519	-	hypothetical protein
2514	 69.77	0	2867226..2867870	+	214	78063367	-	Bcep18194_B2520	-	two component LuxR family transcriptional regulator
2515	 70.31	0	2867867..2869651	+	594	78063368	-	Bcep18194_B2521	-	periplasmic sensor signal transduction histidine kinase
2516	 61.52	-1	2869734..2870180	-	148	78063369	-	Bcep18194_B2522	-	hypothetical protein
2517	 64.37	0	2870270..2870836	+	188	78063370	-	Bcep18194_B2523	-	hypothetical protein
2518	 67.66	0	2870849..2872159	-	436	78063371	-	Bcep18194_B2524	-	major facilitator transporter
2519	 68.34	0	2872282..2873298	-	338	78063372	-	Bcep18194_B2525	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
2520	 67.87	0	2873585..2874250	+	221	78063373	-	Bcep18194_B2526	-	two component transcriptional regulator
2521	 69.27	0	2874237..2875658	+	473	78063374	-	Bcep18194_B2527	-	periplasmic sensor signal transduction histidine kinase
2522	 60.40	-1	2875701..2876147	-	148	78063375	-	Bcep18194_B2528	-	hypothetical protein
2523	 66.84	0	2876393..2876977	+	194	78063376	-	Bcep18194_B2529	-	TetR family transcriptional regulator
2524	 70.25	0	2877031..2878257	+	408	78063377	-	Bcep18194_B2530	-	major facilitator transporter
2525	 68.94	0	2878254..2879132	+	292	78063378	-	Bcep18194_B2531	-	6-phosphogluconate dehydrogenase, NAD-binding
2526	 68.76	0	2879182..2879946	-	254	78063379	-	Bcep18194_B2532	-	branched chain amino acid ABC transporter ATPase
2527	 71.91	+1	2879943..2880800	-	285	78063380	-	Bcep18194_B2533	-	branched chain amino acid ABC transporter ATPase
2528	 70.81	+1	2880812..2882623	-	603	78063381	-	Bcep18194_B2534	-	branched chain amino acid ABC transporter inner membrane protein
2529	 68.26	0	2882664..2883857	-	397	78063382	-	Bcep18194_B2535	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
2530	 72.25	+1	2884156..2885229	+	357	78063383	-	Bcep18194_B2536	-	LysR family transcriptional regulator
2531	 70.64	+1	2885226..2886659	+	477	78063384	-	Bcep18194_B2537	-	FAD dependent oxidoreductase
2532	 66.85	0	2886705..2887235	+	176	78063385	-	Bcep18194_B2538	-	hypothetical protein
2533	 67.17	0	2887232..2887825	+	197	78063386	-	Bcep18194_B2539	-	uncharacterized peroxidase
2534	 58.97	-2	2887935..2888636	-	233	78063387	-	Bcep18194_B2540	-	putative protein-S-isoprenylcysteine methyltransferase-like
2535	 66.90	0	2889012..2889443	-	143	78063388	-	Bcep18194_B2541	-	AsnC family transcriptional regulator
2536	 68.70	0	2889742..2890821	+	359	78063389	-	Bcep18194_B2542	-	ornithine cyclodeaminase
2537	 66.77	0	2890881..2891882	+	333	78063390	-	Bcep18194_B2543	-	amidinotransferase
2538	 71.40	+1	2891973..2894717	-	914	78063391	-	Bcep18194_B2544	-	molecular chaperone-like
2539	 70.52	0	2894723..2896564	-	613	78063392	-	Bcep18194_B2545	-	molecular chaperone-like
2540	 72.28	+1	2896561..2897094	-	177	78063393	-	Bcep18194_B2546	-	hypothetical protein
2541	 65.45	0	2897345..2897836	-	163	78063394	-	Bcep18194_B2547	-	BadM/Rrf2 family transcriptional regulator
2542	 69.40	0	2897932..2898846	+	304	78063395	-	Bcep18194_B2548	-	FAD dependent oxidoreductase
2543	 62.69	-1	2898874..2899728	-	284	78063396	-	Bcep18194_B2549	-	hypothetical protein
2544	 68.19	0	2899887..2901332	-	481	78063397	-	Bcep18194_B2550	-	major facilitator transporter
2545	 70.69	+1	2901349..2902491	-	380	78063398	-	Bcep18194_B2551	-	Iron-containing alcohol dehydrogenase
2546	 68.84	0	2902713..2903588	-	291	78063399	-	Bcep18194_B2552	-	LysR family transcriptional regulator
2547	 68.85	0	2903718..2904677	+	319	78063400	-	Bcep18194_B2553	-	LysR family transcriptional regulator
2548	 69.91	0	2904857..2905936	+	359	78063401	-	Bcep18194_B2554	-	alanine racemase-like
2549	 69.55	0	2906046..2907017	+	323	78063402	-	Bcep18194_B2555	-	ornithine cyclodeaminase
2550	 65.98	0	2907040..2907762	+	240	78063403	-	Bcep18194_B2556	-	HAD family hydrolase
2551	 63.92	0	2907893..2908510	-	205	78063404	-	Bcep18194_B2557	-	glutathione S-transferase-like protein
2552	 66.40	0	2908599..2908967	-	122	78063405	-	Bcep18194_B2558	-	hypothetical protein
2553	 67.52	0	2909049..2909516	+	155	78063406	-	Bcep18194_B2559	-	MarR family transcriptional regulator
2554	 70.08	0	2909653..2910414	+	253	78063407	-	Bcep18194_B2560	-	PEP phosphonomutase
2555	 67.56	0	2910547..2911104	+	185	78063408	-	Bcep18194_B2561	-	carboxymuconolactone decarboxylase
2556	 68.44	0	2911153..2911998	+	281	78063409	-	Bcep18194_B2562	-	XRE family transcriptional regulator
2557	 71.12	+1	2912029..2913240	-	403	78063410	-	Bcep18194_B2563	-	major facilitator transporter
2558	 70.19	0	2913311..2914360	+	349	78063411	-	Bcep18194_B2564	-	AraC family transcriptional regulator
2559	 64.69	0	2914469..2914771	-	100	78063412	-	Bcep18194_B2565	-	hypothetical protein
2560	 69.92	0	2914785..2916692	-	635	78063413	-	Bcep18194_B2566	-	hypothetical protein
2561	 62.37	-1	2917067..2917252	+	61	78063414	-	Bcep18194_B2567	-	hypothetical protein
2562	 68.12	0	2917329..2917604	+	91	78063415	-	Bcep18194_B2568	-	hypothetical protein
2563	 69.16	0	2917931..2918251	-	106	78063416	-	Bcep18194_B2569	-	hypothetical protein
2564	 68.97	0	2918562..2919038	-	158	78063417	-	Bcep18194_B2570	-	hypothetical protein
2565	 65.60	0	2919197..2921167	-	656	78063418	-	Bcep18194_B2571	-	amino acid transporter-like
2566	 63.77	0	2921644..2922507	+	287	78063419	-	Bcep18194_B2572	-	enoyl-CoA hydratase
2567	 66.07	0	2922556..2924559	-	667	78063420	-	Bcep18194_B2573	-	RNase II stability modulator
2568	 70.78	+1	2925124..2928774	-	1216	78063421	-	Bcep18194_B2574	-	5-oxoprolinase (ATP-hydrolyzing)
2569	 68.75	0	2928895..2930193	-	432	78063422	-	Bcep18194_B2575	-	major facilitator transporter
2570	 68.86	0	2930272..2931045	-	257	78063423	-	Bcep18194_B2576	-	hypothetical protein
2571	 68.38	0	2931257..2932189	+	310	78063424	-	Bcep18194_B2577	-	LysR family transcriptional regulator
2572	 67.77	0	2932208..2933290	+	360	78063425	-	Bcep18194_B2578	-	hypothetical protein
2573	 67.14	0	2933382..2935082	-	566	78063426	-	Bcep18194_B2579	-	hypothetical protein
2574	 63.30	-1	2935280..2935606	-	108	78063427	-	Bcep18194_B2580	-	hypothetical protein
2575	 69.91	0	2935672..2936658	-	328	78063428	-	Bcep18194_B2581	-	hypothetical protein
2576	 68.52	0	2936652..2937461	-	269	78063429	-	Bcep18194_B2582	-	NLPA lipoprotein
2577	 71.05	+1	2937458..2938507	-	349	78063430	-	Bcep18194_B2583	-	hypothetical protein
2578	 67.43	0	2938524..2940482	-	652	78063431	-	Bcep18194_B2584	-	sulfatase
2579	 67.92	0	2940695..2941414	-	239	78063432	-	Bcep18194_B2585	-	short chain dehydrogenase
2580	 65.51	0	2941874..2942479	+	201	78063433	-	Bcep18194_B2586	-	hypothetical protein
2581	 62.33	-1	2942510..2942947	+	145	78063434	-	Bcep18194_B2587	-	hypothetical protein
2582	 64.54	0	2942973..2943911	+	312	78063435	-	Bcep18194_B2588	-	curli production assembly/transport component CsgG
2583	 68.32	0	2943941..2944483	+	180	78063436	-	Bcep18194_B2589	-	hypothetical protein
2584	 63.17	-1	2944615..2945988	+	457	78063437	-	Bcep18194_B2590	-	curlin associated protein
2585	 67.29	0	2946060..2946380	+	106	78063438	-	Bcep18194_B2591	-	hypothetical protein
2586	 70.02	0	2946463..2947863	-	466	78063439	-	Bcep18194_B2592	-	major facilitator transporter
2587	 70.02	0	2947975..2948868	-	297	78063440	-	Bcep18194_B2593	-	hypothetical protein
2588	 73.03	+1	2949101..2950012	-	303	78063441	-	Bcep18194_B2594	-	LysR family transcriptional regulator
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.