IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
202	 64.58	0	219399..220022	+	207	78061055	-	Bcep18194_B0203	-	glutathione S-transferase-like protein
203	 71.59	+1	220130..221530	-	466	78061056	-	Bcep18194_B0204	-	Beta-lactamase
204	 67.77	0	221723..222901	-	392	78061057	-	Bcep18194_B0205	-	hypothetical protein
205	 67.82	0	223185..223616	+	143	78061058	-	Bcep18194_B0206	-	histidine triad (HIT) protein
206	 66.06	0	223872..224036	+	54	78061059	-	Bcep18194_B0207	-	hypothetical protein
207	 66.97	0	224199..224858	+	219	78061060	-	Bcep18194_B0208	-	isoprenylcysteine carboxyl methyltransferase
208	 74.72	+2	225237..225683	+	148	78061061	-	Bcep18194_B0209	-	hypothetical protein
209	 63.61	0	225817..226110	-	97	78061062	-	Bcep18194_B0210	-	hypothetical protein
210	 62.37	-1	226551..227387	+	278	78061063	-	Bcep18194_B0211	-	hypothetical protein
211	 59.32	-2	227540..228682	-	380	78061064	-	Bcep18194_B0212	-	hypothetical protein
212	 66.92	0	228766..229560	-	264	78061065	-	Bcep18194_B0213	-	aminoglycoside/hydroxyurea antibiotic resistance kinase
213	 70.53	0	229799..231922	+	707	78061066	-	Bcep18194_B0214	-	penicillin-binding protein 1A
214	 67.16	0	231931..232542	+	203	78061067	-	Bcep18194_B0215	-	hypothetical protein
215	 62.53	-1	232631..233017	-	128	78061068	-	Bcep18194_B0216	-	hypothetical protein
216	 69.83	0	233137..233958	-	273	78061069	-	Bcep18194_B0217	-	hemin importer ATP-binding subunit
217	 74.84	+2	233978..235066	-	362	78061070	-	Bcep18194_B0218	-	ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit
218	 74.62	+2	235082..235999	-	305	78061071	-	Bcep18194_B0219	-	ABC cobalamin/Fe3+-siderophore transporter, periplasmic ligand binding protein
219	 69.14	0	235996..237087	-	363	78061072	-	Bcep18194_B0220	-	heme degradation protein
220	 67.72	0	237137..239404	-	755	78061073	-	Bcep18194_B0221	-	TonB-dependent haemoglobin/transferrin/lactoferrin receptor
221	 65.79	0	239643..239870	-	75	78061074	-	Bcep18194_B0222	-	hypothetical protein
222	 65.52	0	240072..240506	-	144	78061075	-	Bcep18194_B0223	-	hypothetical protein
223	 62.84	-1	240580..240840	-	86	78061076	-	Bcep18194_B0224	-	hypothetical protein
224	 63.98	0	241048..242199	-	383	78061077	-	Bcep18194_B0225	-	outer membrane protein (porin)
225	 65.06	0	242508..243314	+	268	78061078	-	Bcep18194_B0226	-	YaeC family lipoprotein
226	 67.74	0	243448..244563	-	371	78061079	-	Bcep18194_B0227	-	succinylglutamate desuccinylase/aspartoacylase
227	 62.96	-1	244788..245570	-	260	78061080	-	Bcep18194_B0228	-	lysine/arginine/ornithine  ABC transporter periplasmic ligand-binding protein
228	 69.06	0	245797..246717	-	306	78061081	-	Bcep18194_B0229	-	LysR family transcriptional regulator
229	 70.68	+1	246866..247813	-	315	78061082	-	Bcep18194_B0230	-	transcriptional regulator
230	 66.67	0	247920..248228	+	102	78061083	-	Bcep18194_B0231	-	hypothetical protein
231	 69.65	0	248225..248626	+	133	78061084	-	Bcep18194_B0232	-	hypothetical protein
232	 68.69	0	248671..249264	-	197	78061085	-	Bcep18194_B0233	-	hypothetical protein
233	 67.46	0	249478..250866	-	462	78061086	-	Bcep18194_B0234	-	xanthine/uracil/vitamin C transporter
234	 66.96	0	251396..252073	-	225	78061087	-	Bcep18194_B0235	-	TetR family transcriptional regulator
235	 67.57	0	252122..252787	+	221	78061088	-	Bcep18194_B0236	-	O-methyltransferase family protein
236	 70.95	+1	252906..253442	-	178	78061089	-	Bcep18194_B0237	-	hypothetical protein
237	 70.05	0	253620..254624	-	334	78061090	-	Bcep18194_B0238	-	aldo/keto reductase
238	 70.34	0	254647..255762	-	371	78061091	-	Bcep18194_B0239	-	NADH-flavin oxidoreductase/NADH oxidase
239	 66.54	0	255832..256638	-	268	78061092	dkgB	Bcep18194_B0240	-	2,5-diketo-D-gluconate reductase B
240	 68.26	0	256796..257737	+	313	78061093	-	Bcep18194_B0241	-	LysR family transcriptional regulator
241	 66.87	0	257825..259300	-	491	78061094	-	Bcep18194_B0242	-	glucose-6-phosphate 1-dehydrogenase
242	 70.29	0	259503..260081	+	192	78061095	-	Bcep18194_B0243	-	TetR family transcriptional regulator
243	 70.32	0	260256..261131	+	291	78061096	-	Bcep18194_B0244	-	Short-chain dehydrogenase/reductase SDR
244	 67.31	0	261260..261880	-	206	78061097	-	Bcep18194_B0245	-	(Acyl-carrier protein) phosphodiesterase
245	 66.25	0	261944..262426	+	160	78061098	-	Bcep18194_B0246	-	putative transcriptional regulator
246	 69.37	0	262455..263231	-	258	78061099	-	Bcep18194_B0247	-	hypothetical protein
247	 66.45	0	263483..264391	+	302	78061100	-	Bcep18194_B0248	-	LysR family transcriptional regulator
248	 62.87	-1	264527..265105	-	192	78061101	-	Bcep18194_B0249	-	alkylhydroperoxidase AhpD core
249	 69.92	0	265191..266174	-	327	78061102	-	Bcep18194_B0250	-	zinc-containing alcohol dehydrogenase superfamily protein
250	 67.14	0	266228..266866	-	212	78061103	-	Bcep18194_B0251	-	TetR family transcriptional regulator
251	 68.01	0	267086..268276	+	396	78061104	-	Bcep18194_B0252	-	peptidase M20D, amidohydrolase
252	 68.62	0	268335..269666	+	443	78061105	-	Bcep18194_B0253	-	major facilitator transporter
253	 69.60	0	269713..270633	-	306	78061106	-	Bcep18194_B0254	-	LysR family transcriptional regulator
254	 66.02	0	270770..271543	+	257	78061107	-	Bcep18194_B0255	-	extracellular solute-binding protein
255	 68.46	0	271603..272718	+	371	78061108	-	Bcep18194_B0256	-	succinylglutamate desuccinylase/aspartoacylase
256	 66.97	0	272896..273891	-	331	78061109	-	Bcep18194_B0257	-	LysR family transcriptional regulator
257	 66.97	0	273986..274966	+	326	78061110	-	Bcep18194_B0258	-	amidohydrolase 2
258	 69.26	0	275205..276554	+	449	78061111	-	Bcep18194_B0259	-	major facilitator transporter
259	 68.45	0	276595..277716	+	373	78061112	-	Bcep18194_B0260	-	outer membrane protein (porin)
260	 58.82	-2	278069..279139	+	356	78061113	-	Bcep18194_B0261	-	hypothetical protein
261	 67.03	0	279160..279987	-	275	78061114	-	Bcep18194_B0262	-	IclR family transcriptional regulator
262	 69.08	0	280176..281378	+	400	78061115	-	Bcep18194_B0263	-	beta-ketoadipyl CoA thiolase
263	 68.66	0	281468..281968	-	166	78061116	-	Bcep18194_B0264	-	hypothetical protein
264	 69.16	0	282078..282638	-	186	78061117	-	Bcep18194_B0265	-	GCN5-related N-acetyltransferase
265	 66.43	0	282635..283492	-	285	78061118	-	Bcep18194_B0266	-	hypothetical protein
266	 68.03	0	283817..285361	+	514	78061119	-	Bcep18194_B0267	-	methyl-accepting chemotaxis sensory transducer
267	 67.06	0	285775..287319	+	514	78061120	-	Bcep18194_B0268	-	methyl-accepting chemotaxis sensory transducer
268	 60.28	-1	287438..288016	-	192	78061121	-	Bcep18194_B0269	-	stress protein
269	 63.72	0	288049..288624	-	191	78061122	-	Bcep18194_B0270	-	stress protein
270	 60.14	-1	288653..289648	-	331	78061123	-	Bcep18194_B0271	-	integral membrane protein TerC
271	 57.56	-2	289696..290145	-	149	78061124	-	Bcep18194_B0272	-	tellurite resistance TerB
272	 62.53	-1	290194..291402	-	402	78061125	-	Bcep18194_B0273	-	stress protein
273	 62.29	-1	291399..291992	-	197	78061126	-	Bcep18194_B0274	-	stress protein
274	 63.72	0	292252..293202	-	316	78061127	-	Bcep18194_B0275	-	citrate lyase beta subunit-like
275	 64.93	0	293199..294293	-	364	78061128	-	Bcep18194_B0276	-	hypothetical protein
276	 66.93	0	294286..295044	-	252	78061129	-	Bcep18194_B0277	-	hypothetical protein
277	 65.07	0	295034..296161	-	375	78061130	-	Bcep18194_B0278	-	hypothetical protein
278	 67.07	0	296617..298086	-	489	78061131	-	Bcep18194_B0279	-	succinate semialdehyde dehydrogenase
279	 66.82	0	298179..299468	-	429	78061132	-	Bcep18194_B0280	-	4-aminobutyrate aminotransferase
280	 70.44	0	299589..301100	+	503	78061133	-	Bcep18194_B0281	-	GntR family transcriptional regulator
281	 67.81	0	301223..302713	-	496	78061134	-	Bcep18194_B0282	-	C4-dicarboxylate anaerobic carrier
282	 69.38	0	302743..303516	-	257	78061135	-	Bcep18194_B0283	-	IclR family transcriptional regulator
283	 69.67	0	303513..304412	-	299	78061136	-	Bcep18194_B0284	-	N-formylglutamate amidohydrolase
284	 66.76	0	304762..305865	+	367	78061137	-	Bcep18194_B0285	-	outer membrane protein (porin)
285	 69.61	0	305899..306780	-	293	78061138	-	Bcep18194_B0286	-	hypothetical protein
286	 70.86	+1	306842..307915	+	357	78061139	-	Bcep18194_B0287	-	selenophosphate synthetase
287	 69.04	0	307988..308578	+	196	78061140	-	Bcep18194_B0288	-	lysine exporter protein LysE/YggA
288	 66.48	0	308826..309905	+	359	78061141	-	Bcep18194_B0289	-	purine nucleoside transporter
289	 59.26	-2	310000..310755	-	251	78061142	-	Bcep18194_B0290	-	hypothetical protein
290	 57.86	-2	310769..311404	-	211	78061143	-	Bcep18194_B0291	-	hypothetical protein
291	 67.01	0	312060..312353	-	97	78061144	-	Bcep18194_B0292	-	hypothetical protein
292	 63.88	0	312781..313785	-	334	78061145	-	Bcep18194_B0293	-	LysR family transcriptional regulator
293	 66.78	0	313960..314820	+	286	78061146	-	Bcep18194_B0294	-	esterase/lipase/thioesterase
294	 68.72	0	314853..316070	+	405	78061147	-	Bcep18194_B0295	-	HlyD family secretion protein
295	 64.92	0	316116..319316	+	1066	78061148	-	Bcep18194_B0296	-	hydrophobe/amphiphile efflux pump, HAE1
296	 70.38	0	319327..320862	+	511	78061149	-	Bcep18194_B0297	-	RND efflux system outer membrane lipoprotein
297	 68.34	0	320956..321552	-	198	78061150	-	Bcep18194_B0298	-	TetR family transcriptional regulator
298	 67.36	0	321678..322109	+	143	78061151	-	Bcep18194_B0299	-	hypothetical protein
299	 69.14	0	322175..323065	-	296	78061152	-	Bcep18194_B0300	-	LysR family transcriptional regulator
300	 63.11	-1	323165..323614	+	149	78061153	-	Bcep18194_B0301	-	transmembrane protein
301	 67.27	0	323965..326118	+	717	78061154	-	Bcep18194_B0302	-	phosphoesterase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.