IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2406	 66.34	0	2746663..2747874	+	403	78063259	-	Bcep18194_B2412	-	cysteine desulfurase IscS
2407	 63.35	0	2747931..2748473	-	180	78063260	-	Bcep18194_B2413	-	MarR family transcriptional regulator
2408	 65.48	0	2748602..2749192	+	196	78063261	-	Bcep18194_B2414	-	hypothetical protein
2409	 67.02	0	2749257..2750960	-	567	78063262	-	Bcep18194_B2415	-	Sigma54-dependent transcriptional regulator RtcR
2410	 66.40	0	2751541..2752683	+	380	78063263	-	Bcep18194_B2416	-	SPFH domain-containing protein/band 7 family protein
2411	 66.43	0	2752680..2753966	+	428	78063264	-	Bcep18194_B2417	-	hypothetical protein
2412	 67.28	0	2754022..2754834	+	270	78063265	-	Bcep18194_B2418	-	nucleotidyltransferase-like
2413	 67.97	0	2755092..2756240	+	382	78063266	-	Bcep18194_B2419	-	hypothetical protein
2414	 65.67	0	2756303..2757607	+	434	78063267	-	Bcep18194_B2420	-	hypothetical protein
2415	 68.31	0	2757644..2758312	-	222	78063268	-	Bcep18194_B2421	-	O-methyltransferase family protein
2416	 66.36	0	2758445..2759740	+	431	78063269	-	Bcep18194_B2422	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2417	 66.39	0	2759927..2760652	+	241	78063270	-	Bcep18194_B2423	-	hypothetical protein
2418	 68.65	0	2760675..2761178	-	167	78063271	-	Bcep18194_B2424	-	hypothetical protein
2419	 66.67	0	2761244..2761519	-	91	78063272	-	Bcep18194_B2425	-	hypothetical protein
2420	 64.94	0	2761837..2762997	+	386	78063273	-	Bcep18194_B2426	-	outer membrane protein (porin)
2421	 60.36	-1	2763198..2763641	-	147	78063274	-	Bcep18194_B2427	-	hypothetical protein
2422	 62.50	-1	2763744..2764031	+	95	78063275	-	Bcep18194_B2428	-	hypothetical protein
2423	 67.79	0	2764111..2765535	-	474	78063276	-	Bcep18194_B2429	-	heavy metal sensor signal transduction histidine kinase
2424	 66.08	0	2765532..2766215	-	227	78063277	-	Bcep18194_B2430	-	two component heavy metal response transcriptional regulator
2425	 68.29	0	2766215..2769427	-	1070	78063278	-	Bcep18194_B2431	-	CzcA family heavy metal efflux protein
2426	 69.26	0	2769553..2771019	-	488	78063279	-	Bcep18194_B2432	-	HlyD family secretion protein
2427	 71.35	+1	2771054..2772376	-	440	78063280	-	Bcep18194_B2433	-	outer membrane efflux protein
2428	 69.27	0	2772620..2773810	-	396	78063281	-	Bcep18194_B2434	-	aminoglycoside phosphotransferase
2429	 70.14	0	2773852..2774484	-	210	78063282	-	Bcep18194_B2435	-	nicotinamide mononucleotide transporter
2430	 68.28	0	2774544..2776775	-	743	78063283	-	Bcep18194_B2436	-	TonB-dependent siderophore receptor
2431	 59.31	-2	2777379..2777582	-	67	78063284	-	Bcep18194_B2437	-	hypothetical protein
2432	 69.28	0	2777705..2779846	-	713	78063285	-	Bcep18194_B2438	-	oxidoreductase FAD/NAD(P)-binding
2433	 71.01	+1	2779883..2780527	-	214	78063286	-	Bcep18194_B2439	-	glutathione S-transferase-like protein
2434	 71.02	+1	2780654..2781595	+	313	78063287	-	Bcep18194_B2440	-	LysR family transcriptional regulator
2435	 59.83	-1	2781726..2782193	-	155	78063288	-	Bcep18194_B2441	-	hypothetical protein
2436	 67.88	0	2782257..2782913	-	218	78063289	-	Bcep18194_B2442	-	TetR family transcriptional regulator
2437	 71.43	+1	2783002..2783904	+	300	78063290	-	Bcep18194_B2443	-	Short-chain dehydrogenase/reductase SDR
2438	 67.62	0	2783901..2785475	+	524	78063291	-	Bcep18194_B2444	-	K+ transport flavoprotein
2439	 71.34	+1	2785483..2786466	+	327	78063292	-	Bcep18194_B2445	-	Alpha/beta hydrolase
2440	 68.42	0	2786524..2786922	-	132	78063293	-	Bcep18194_B2446	-	carboxymuconolactone decarboxylase
2441	 75.00	+2	2788425..2789684	+	419	78063294	-	Bcep18194_B2447	-	lipoprotein
2442	 67.03	0	2789712..2791088	+	458	78063295	-	Bcep18194_B2448	-	hypothetical protein
2443	 69.34	0	2791155..2792387	-	410	78063296	-	Bcep18194_B2449	-	Bcr/CflA subfamily drug resistance transporter
2444	 68.73	0	2793098..2793679	+	193	78063297	-	Bcep18194_B2450	-	hypothetical protein
2445	 64.77	0	2793706..2794602	-	298	78063298	-	Bcep18194_B2451	-	hypothetical protein
2446	 69.46	0	2794692..2795264	+	190	78063299	-	Bcep18194_B2452	-	NADPH-dependent FMN reductase
2447	 66.04	0	2795345..2795662	-	105	78063300	-	Bcep18194_B2453	-	hypothetical protein
2448	 62.50	-1	2795903..2796406	+	167	78063301	-	Bcep18194_B2454	-	hypothetical protein
2449	 70.79	+1	2796440..2797045	-	201	78063302	-	Bcep18194_B2455	-	hypothetical protein
2450	 69.15	0	2797042..2797686	-	214	78063303	-	Bcep18194_B2456	-	hypothetical protein
2451	 68.54	0	2797690..2800737	-	1015	78063304	-	Bcep18194_B2457	-	hypothetical protein
2452	 73.97	+1	2800748..2801527	-	259	78063305	-	Bcep18194_B2458	-	hypothetical protein
2453	 68.81	0	2802059..2803270	+	403	78063306	-	Bcep18194_B2459	-	hypothetical protein
2454	 67.61	0	2803358..2803996	-	212	78063307	-	Bcep18194_B2460	-	lysine exporter protein LysE/YggA
2455	 69.32	0	2804085..2804612	+	175	78063308	-	Bcep18194_B2461	-	GCN5-related N-acetyltransferase
2456	 67.01	0	2804662..2805240	+	192	78063309	-	Bcep18194_B2462	-	hypothetical protein
2457	 68.48	0	2805449..2806828	+	459	78063310	-	Bcep18194_B2463	-	mercuric reductase
2458	 67.55	0	2806920..2807822	+	300	78063311	-	Bcep18194_B2464	-	LysR family transcriptional regulator
2459	 68.59	0	2807946..2808935	+	329	78063312	-	Bcep18194_B2465	-	zinc-containing alcohol dehydrogenase superfamily protein
2460	 70.92	+1	2808995..2809888	-	297	78063313	-	Bcep18194_B2466	-	NAD-dependent epimerase/dehydratase
2461	 72.38	+1	2809984..2810841	+	285	78063314	-	Bcep18194_B2467	-	XRE family transcriptional regulator
2462	 72.60	+1	2811057..2812286	+	409	78063315	-	Bcep18194_B2468	-	major facilitator transporter
2463	 65.24	0	2812421..2813191	+	256	78063316	-	Bcep18194_B2469	-	ABC amino acid transporter, periplasmic ligand binding protein
2464	 62.76	-1	2813270..2813653	-	127	78063317	-	Bcep18194_B2470	-	hypothetical protein
2465	 62.45	-1	2813857..2814378	+	173	78063318	-	Bcep18194_B2471	-	GCN5-related N-acetyltransferase
2466	 65.01	0	2814544..2815629	+	361	78063319	-	Bcep18194_B2472	-	hypothetical protein
2467	 62.73	-1	2815688..2816221	-	177	78063320	-	Bcep18194_B2473	-	GCN5-related N-acetyltransferase
2468	 64.95	0	2816405..2816869	-	154	78063321	-	Bcep18194_B2474	-	vertebrate C-lysozyme inhibitor
2469	 67.35	0	2816953..2818425	-	490	78063322	-	Bcep18194_B2475	-	amidohydrolase
2470	 66.06	0	2818474..2819952	-	492	78063323	-	Bcep18194_B2476	-	Na+/solute symporter
2471	 69.01	0	2819949..2820161	-	70	78063324	-	Bcep18194_B2477	-	hypothetical protein
2472	 66.41	0	2820201..2821358	-	385	78063325	-	Bcep18194_B2478	-	outer membrane protein (porin)
2473	 71.63	+1	2821752..2823101	-	449	78063326	-	Bcep18194_B2479	-	6-aminohexanoate-dimer hydrolase
2474	 70.51	0	2823148..2823537	-	129	78063327	-	Bcep18194_B2480	-	transport-associated protein
2475	 67.80	0	2823575..2824633	-	352	78063328	-	Bcep18194_B2481	-	outer membrane protein (porin)
2476	 71.90	+1	2824749..2826047	-	432	78063329	-	Bcep18194_B2482	-	major facilitator transporter
2477	 73.30	+1	2826092..2827237	-	381	78063330	-	Bcep18194_B2483	-	L-carnitine dehydratase/bile acid-inducible protein F
2478	 68.69	0	2827234..2828421	-	395	78063331	-	Bcep18194_B2484	-	Acyl-CoA dehydrogenase
2479	 68.97	0	2828433..2830037	-	534	78063332	-	Bcep18194_B2485	-	AMP-dependent synthetase and ligase
2480	 72.17	+1	2830088..2830978	+	296	78063333	-	Bcep18194_B2486	-	LysR family transcriptional regulator
2481	 69.96	0	2831123..2832460	+	445	78063334	-	Bcep18194_B2487	-	major facilitator transporter
2482	 67.75	0	2832685..2833695	-	336	78063335	-	Bcep18194_B2488	-	3-hydroxybutyryl-CoA dehydrogenase
2483	 69.59	0	2833692..2834957	-	421	78063336	-	Bcep18194_B2489	-	NAD-dependent glycerol-3-phosphate dehydrogenase-like
2484	 72.62	+1	2834957..2835931	+	324	78063337	-	Bcep18194_B2490	-	AraC family transcriptional regulator
2485	 69.95	0	2835928..2836962	+	344	78063338	-	Bcep18194_B2491	-	LysR family transcriptional regulator
2486	 69.08	0	2837007..2838125	-	372	78063339	-	Bcep18194_B2492	-	outer membrane protein (porin)
2487	 68.31	0	2838537..2839934	+	465	78063340	-	Bcep18194_B2493	-	major facilitator transporter
2488	 68.98	0	2840102..2841094	+	330	78063341	-	Bcep18194_B2494	-	ferredoxin
2489	 67.97	0	2841282..2842202	-	306	78063342	-	Bcep18194_B2495	-	LysR family transcriptional regulator
2490	 65.03	0	2842342..2843625	+	427	78063343	-	Bcep18194_B2496	-	ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein
2491	 67.07	0	2843625..2844125	+	166	78063344	-	Bcep18194_B2497	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2492	 69.25	0	2844307..2844693	+	128	78063345	-	Bcep18194_B2498	-	4-oxalocrotonate tautomerase
2493	 69.86	0	2844771..2846336	-	521	78063346	-	Bcep18194_B2499	-	PAS/PAC sensor signal transduction histidine kinase
2494	 72.03	+1	2846493..2847686	+	397	78063347	-	Bcep18194_B2500	-	Acyl-CoA dehydrogenase-like
2495	 67.20	0	2847792..2848169	+	125	78063348	-	Bcep18194_B2501	-	hypothetical protein
2496	 71.07	+1	2848178..2848699	+	173	78063349	-	Bcep18194_B2502	-	hypothetical protein
2497	 69.69	0	2848731..2849855	+	374	78063350	-	Bcep18194_B2503	-	amidase
2498	 68.68	0	2849915..2850658	+	247	78063351	-	Bcep18194_B2504	-	Short-chain dehydrogenase/reductase SDR
2499	 66.67	0	2850765..2851397	-	210	78063352	-	Bcep18194_B2505	-	two component LuxR family transcriptional regulator
2500	 68.05	0	2851646..2852296	+	216	78063353	-	Bcep18194_B2506	-	4-hydroxyphenylacetate 3-monooxygenase, reductase component
2501	 71.85	+1	2852317..2853648	-	443	78063354	-	Bcep18194_B2507	-	hypothetical protein
2502	 68.46	0	2853813..2854370	-	185	78063355	-	Bcep18194_B2508	-	hypothetical protein
2503	 65.57	0	2854476..2854931	+	151	78063356	-	Bcep18194_B2509	-	AsnC family transcriptional regulator
2504	 66.35	0	2855486..2856439	+	317	78063357	-	Bcep18194_B2510	-	hypothetical protein
2505	 66.86	0	2856456..2856965	-	169	78063358	-	Bcep18194_B2511	-	GCN5-related N-acetyltransferase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.