IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2338	 68.22	0	2673737..2674831	+	364	78063191	-	Bcep18194_B2344	-	HlyD family secretion protein
2339	 65.52	0	2674845..2676419	+	524	78063192	-	Bcep18194_B2345	-	EmrB/QacA family drug resistance transporter
2340	 65.62	0	2676439..2677875	+	478	78063193	-	Bcep18194_B2346	-	RND efflux system outer membrane lipoprotein
2341	 67.15	0	2678128..2678751	-	207	78063194	-	Bcep18194_B2347	-	lysine exporter protein LysE/YggA
2342	 64.77	0	2678896..2679528	-	210	78063195	-	Bcep18194_B2348	-	glutathione S-transferase-like protein
2343	 62.04	-1	2679678..2680088	-	136	78063196	-	Bcep18194_B2349	-	hypothetical protein
2344	 67.11	0	2680301..2680528	-	75	78063197	-	Bcep18194_B2350	-	hypothetical protein
2345	 60.92	-1	2680572..2680919	-	115	78063198	-	Bcep18194_B2351	-	hypothetical protein
2346	 67.00	0	2681040..2681951	+	303	78063199	-	Bcep18194_B2352	-	LysR family transcriptional regulator
2347	 65.91	0	2682085..2683401	+	438	78063200	-	Bcep18194_B2353	-	major facilitator transporter
2348	 60.97	-1	2683414..2684676	+	420	78063201	-	Bcep18194_B2354	-	amidohydrolase
2349	 38.97	-2	2684974..2685594	-	206	78063202	-	Bcep18194_B2355	-	hypothetical protein
2350	 57.66	-2	2685687..2686508	-	273	78063203	-	Bcep18194_B2356	-	hypothetical protein
2351	 63.39	0	2686581..2688443	-	620	78063204	-	Bcep18194_B2357	-	methyl-accepting chemotaxis sensory transducer
2352	 65.35	0	2688613..2689293	-	226	78063205	-	Bcep18194_B2358	-	OmpA/MotB family outer membrane protein
2353	 66.14	0	2689333..2690097	-	254	78063206	-	Bcep18194_B2359	-	MotA/TolQ/ExbB proton channel
2354	 64.66	0	2690111..2691355	-	414	78063207	-	Bcep18194_B2360	-	cyclic nucleotide-binding protein
2355	 64.53	0	2691633..2692100	-	155	78063208	-	Bcep18194_B2361	-	lytic transglycosylase, catalytic
2356	 70.57	+1	2692154..2692537	-	127	78063209	-	Bcep18194_B2362	-	hypothetical protein
2357	 64.52	0	2692552..2692923	-	123	78063210	-	Bcep18194_B2363	-	hypothetical protein
2358	 64.56	0	2693141..2693803	-	220	78063211	-	Bcep18194_B2364	-	glutathione S-transferase-like protein
2359	 66.30	0	2694092..2695447	+	451	78063212	-	Bcep18194_B2365	-	polyhydroxyalkanoate depolymerase
2360	 69.18	0	2695553..2696029	-	158	78063213	-	Bcep18194_B2366	-	hypothetical protein
2361	 65.52	0	2696543..2696977	-	144	78063214	-	Bcep18194_B2367	-	hypothetical protein
2362	 69.98	0	2697061..2698056	-	331	78063215	-	Bcep18194_B2368	-	ABC sugar transporter, inner membrane subunit
2363	 66.56	0	2698058..2699035	-	325	78063216	-	Bcep18194_B2369	-	ABC sugar transporter, inner membrane subunit
2364	 69.56	0	2699069..2700625	-	518	78063217	-	Bcep18194_B2370	-	ABC sugar transporter, ATPase subunit
2365	 66.67	0	2700675..2701700	-	341	78063218	-	Bcep18194_B2371	-	ABC sugar transporter, periplasmic ligand binding protein
2366	 70.43	0	2701829..2702758	-	309	78063219	-	Bcep18194_B2372	-	aldose 1-epimerase
2367	 68.30	0	2703060..2704100	+	346	78063220	-	Bcep18194_B2373	-	LacI family transcription regulator
2368	 67.01	0	2704491..2706809	+	772	78063221	-	Bcep18194_B2374	-	hypothetical protein
2369	 62.67	-1	2706881..2707681	-	266	78063222	-	Bcep18194_B2375	-	ABC transporter, ATPase subunit
2370	 63.87	0	2707681..2708394	-	237	78063223	-	Bcep18194_B2376	-	ABC His/Glu/Gln/Arg/opine transporter, inner membrane subunit
2371	 62.84	-1	2708391..2709122	-	243	78063224	-	Bcep18194_B2377	-	ABC His/Glu/Gln/Arg/opine transporter, inner membrane subunit
2372	 63.82	0	2709255..2710028	-	257	78063225	-	Bcep18194_B2378	-	lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2373	 68.53	0	2710328..2711080	-	250	78063226	-	Bcep18194_B2379	-	two component transcriptional regulator
2374	 70.59	+1	2711077..2712783	-	568	78063227	-	Bcep18194_B2380	-	periplasmic sensor signal transduction histidine kinase
2375	 68.15	0	2712864..2714948	-	694	78063228	-	Bcep18194_B2381	-	potassium-translocating P-type ATPase, B subunit
2376	 72.22	+1	2714969..2715670	-	233	78063229	-	Bcep18194_B2382	-	potassium-transporting ATPase
2377	 65.85	0	2715681..2717384	-	567	78063230	-	Bcep18194_B2383	-	potassium-transporting ATPase subunit A
2378	 67.94	0	2717939..2718253	+	104	78063231	-	Bcep18194_B2384	-	hypothetical protein
2379	 66.31	0	2718433..2719560	+	375	78063232	-	Bcep18194_B2385	-	outer membrane protein (porin)
2380	 66.52	0	2719743..2720438	+	231	78063233	-	Bcep18194_B2386	-	histidine utilization repressor
2381	 68.28	0	2720454..2721695	-	413	78063234	-	Bcep18194_B2387	-	glycosyl transferase family protein
2382	 66.51	0	2721790..2722410	+	206	78063235	-	Bcep18194_B2388	-	TetR family transcriptional regulator
2383	 66.67	0	2722531..2723133	-	200	78063236	-	Bcep18194_B2389	-	TetR family transcriptional regulator
2384	 65.46	0	2723524..2724186	+	220	78063237	-	Bcep18194_B2390	-	hypothetical protein
2385	 68.62	0	2724213..2725850	+	545	78063238	-	Bcep18194_B2391	-	hypothetical protein
2386	 60.17	-1	2726030..2726383	+	117	78063239	-	Bcep18194_B2392	-	hypothetical protein
2387	 69.57	0	2726421..2727281	-	286	78063240	-	Bcep18194_B2393	-	Alpha/beta hydrolase
2388	 65.58	0	2727391..2728308	-	305	78063241	-	Bcep18194_B2394	-	LysR family transcriptional regulator
2389	 66.67	0	2728490..2728735	-	81	78063242	-	Bcep18194_B2395	-	hypothetical protein
2390	 66.02	0	2729000..2730535	-	511	78063243	-	Bcep18194_B2396	-	amino acid transporter
2391	 67.71	0	2731126..2732658	+	510	78063244	-	Bcep18194_B2397	-	diguanylate cyclase
2392	 68.91	0	2732822..2733892	+	356	78063245	-	Bcep18194_B2398	-	membrane protein
2393	 64.57	0	2734222..2735556	+	444	78063246	-	Bcep18194_B2399	-	argininosuccinate synthase
2394	 66.38	0	2735590..2736285	+	231	78063247	-	Bcep18194_B2400	-	hypothetical protein
2395	 66.16	0	2736627..2737421	+	264	78063248	-	Bcep18194_B2401	-	hypothetical protein
2396	 71.22	+1	2737511..2738629	-	372	78063249	-	Bcep18194_B2402	-	LysR family transcriptional regulator
2397	 66.43	0	2738715..2739134	-	139	78063250	-	Bcep18194_B2403	-	hypothetical protein
2398	 69.66	0	2739266..2740066	-	266	78063251	-	Bcep18194_B2404	-	AraC family transcriptional regulator
2399	 66.51	0	2740240..2740866	+	208	78063252	-	Bcep18194_B2405	-	lysine exporter protein LysE/YggA
2400	 67.73	0	2740950..2742365	+	471	78063253	-	Bcep18194_B2406	-	hypothetical protein
2401	 68.92	0	2742374..2743126	+	250	78063254	-	Bcep18194_B2407	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
2402	 67.97	0	2743147..2743836	-	229	78063255	-	Bcep18194_B2408	-	hypothetical protein
2403	 66.67	0	2743909..2744295	-	128	78063256	-	Bcep18194_B2409	-	hypothetical protein
2404	 63.29	-1	2744344..2745822	-	492	78063257	-	Bcep18194_B2410	-	4-hydroxyphenylacetate 3-hydroxylase
2405	 67.58	0	2745859..2746407	-	182	78063258	-	Bcep18194_B2411	-	flavin reductase-like, FMN-binding
2406	 66.34	0	2746663..2747874	+	403	78063259	-	Bcep18194_B2412	-	cysteine desulfurase IscS
2407	 63.35	0	2747931..2748473	-	180	78063260	-	Bcep18194_B2413	-	MarR family transcriptional regulator
2408	 65.48	0	2748602..2749192	+	196	78063261	-	Bcep18194_B2414	-	hypothetical protein
2409	 67.02	0	2749257..2750960	-	567	78063262	-	Bcep18194_B2415	-	Sigma54-dependent transcriptional regulator RtcR
2410	 66.40	0	2751541..2752683	+	380	78063263	-	Bcep18194_B2416	-	SPFH domain-containing protein/band 7 family protein
2411	 66.43	0	2752680..2753966	+	428	78063264	-	Bcep18194_B2417	-	hypothetical protein
2412	 67.28	0	2754022..2754834	+	270	78063265	-	Bcep18194_B2418	-	nucleotidyltransferase-like
2413	 67.97	0	2755092..2756240	+	382	78063266	-	Bcep18194_B2419	-	hypothetical protein
2414	 65.67	0	2756303..2757607	+	434	78063267	-	Bcep18194_B2420	-	hypothetical protein
2415	 68.31	0	2757644..2758312	-	222	78063268	-	Bcep18194_B2421	-	O-methyltransferase family protein
2416	 66.36	0	2758445..2759740	+	431	78063269	-	Bcep18194_B2422	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2417	 66.39	0	2759927..2760652	+	241	78063270	-	Bcep18194_B2423	-	hypothetical protein
2418	 68.65	0	2760675..2761178	-	167	78063271	-	Bcep18194_B2424	-	hypothetical protein
2419	 66.67	0	2761244..2761519	-	91	78063272	-	Bcep18194_B2425	-	hypothetical protein
2420	 64.94	0	2761837..2762997	+	386	78063273	-	Bcep18194_B2426	-	outer membrane protein (porin)
2421	 60.36	-1	2763198..2763641	-	147	78063274	-	Bcep18194_B2427	-	hypothetical protein
2422	 62.50	-1	2763744..2764031	+	95	78063275	-	Bcep18194_B2428	-	hypothetical protein
2423	 67.79	0	2764111..2765535	-	474	78063276	-	Bcep18194_B2429	-	heavy metal sensor signal transduction histidine kinase
2424	 66.08	0	2765532..2766215	-	227	78063277	-	Bcep18194_B2430	-	two component heavy metal response transcriptional regulator
2425	 68.29	0	2766215..2769427	-	1070	78063278	-	Bcep18194_B2431	-	CzcA family heavy metal efflux protein
2426	 69.26	0	2769553..2771019	-	488	78063279	-	Bcep18194_B2432	-	HlyD family secretion protein
2427	 71.35	+1	2771054..2772376	-	440	78063280	-	Bcep18194_B2433	-	outer membrane efflux protein
2428	 69.27	0	2772620..2773810	-	396	78063281	-	Bcep18194_B2434	-	aminoglycoside phosphotransferase
2429	 70.14	0	2773852..2774484	-	210	78063282	-	Bcep18194_B2435	-	nicotinamide mononucleotide transporter
2430	 68.28	0	2774544..2776775	-	743	78063283	-	Bcep18194_B2436	-	TonB-dependent siderophore receptor
2431	 59.31	-2	2777379..2777582	-	67	78063284	-	Bcep18194_B2437	-	hypothetical protein
2432	 69.28	0	2777705..2779846	-	713	78063285	-	Bcep18194_B2438	-	oxidoreductase FAD/NAD(P)-binding
2433	 71.01	+1	2779883..2780527	-	214	78063286	-	Bcep18194_B2439	-	glutathione S-transferase-like protein
2434	 71.02	+1	2780654..2781595	+	313	78063287	-	Bcep18194_B2440	-	LysR family transcriptional regulator
2435	 59.83	-1	2781726..2782193	-	155	78063288	-	Bcep18194_B2441	-	hypothetical protein
2436	 67.88	0	2782257..2782913	-	218	78063289	-	Bcep18194_B2442	-	TetR family transcriptional regulator
2437	 71.43	+1	2783002..2783904	+	300	78063290	-	Bcep18194_B2443	-	Short-chain dehydrogenase/reductase SDR
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.