IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2267	 66.67	0	2596452..2597630	-	392	78063120	-	Bcep18194_B2273	-	polysaccharide export protein
2268	 65.99	0	2597624..2598067	-	147	78063121	-	Bcep18194_B2274	-	protein tyrosine phosphatase
2269	 68.08	0	2598098..2599510	-	470	78063122	-	Bcep18194_B2275	-	UDP-glucose 6-dehydrogenase
2270	 64.85	0	2599591..2600964	-	457	78063123	-	Bcep18194_B2276	-	sugar transferase
2271	 67.58	0	2601393..2602919	+	508	78063124	-	Bcep18194_B2277	-	mannose-1-phosphate guanylyltransferase (GDP)
2272	 67.73	0	2603042..2603983	-	313	78063125	-	Bcep18194_B2278	-	hypothetical protein
2273	 67.18	0	2604715..2605296	-	193	78063126	-	Bcep18194_B2279	-	hypothetical protein
2274	 66.74	0	2605328..2606665	-	445	78063127	-	Bcep18194_B2280	-	Fe-S oxidoreductase-like
2275	 61.70	-1	2606789..2607211	-	140	78063128	-	Bcep18194_B2281	-	rubrerythrin
2276	 72.50	+1	2607647..2608915	-	422	78063129	-	Bcep18194_B2282	-	putative sigma factor
2277	 65.47	0	2608912..2609328	-	138	78063130	-	Bcep18194_B2283	-	glyoxalase/bleomycin resistance protein/dioxygenase
2278	 67.14	0	2609371..2609790	-	139	78063131	-	Bcep18194_B2284	-	hypothetical protein
2279	 68.93	0	2609916..2610269	-	117	78063132	-	Bcep18194_B2285	-	hypothetical protein
2280	 71.17	+1	2610474..2612339	+	621	78063133	-	Bcep18194_B2286	-	endonuclease/exonuclease/phosphatase
2281	 68.99	0	2612625..2613011	+	128	78063134	-	Bcep18194_B2287	-	protein of unknown function DUF883, ElaB
2282	 67.86	0	2613076..2613660	+	194	78063135	-	Bcep18194_B2288	-	hypothetical protein
2283	 64.50	0	2613888..2614949	+	353	78063136	-	Bcep18194_B2289	-	hypothetical protein
2284	 68.99	0	2614993..2615508	-	171	78063137	-	Bcep18194_B2290	-	hypothetical protein
2285	 69.91	0	2615717..2616733	-	338	78063138	-	Bcep18194_B2291	-	zinc-containing alcohol dehydrogenase superfamily protein
2286	 68.95	0	2616771..2617559	-	262	78063139	-	Bcep18194_B2292	-	short chain dehydrogenase
2287	 69.71	0	2618029..2618619	-	196	78063140	-	Bcep18194_B2293	-	phosphoesterase, PA-phosphatase related
2288	 68.87	0	2618701..2620017	-	438	78063141	-	Bcep18194_B2294	-	manganese transport protein MntH
2289	 69.03	0	2620089..2621018	-	309	78063142	-	Bcep18194_B2295	-	AraC family transcriptional regulator
2290	 70.43	0	2621514..2622443	+	309	78063143	-	Bcep18194_B2296	-	LysR family transcriptional regulator
2291	 69.15	0	2622542..2622943	+	133	78063144	-	Bcep18194_B2297	-	OsmC-like protein
2292	 69.27	0	2623046..2623927	-	293	78063145	-	Bcep18194_B2298	-	Dyp-type peroxidase
2293	 70.37	0	2624418..2626280	+	620	78063146	-	Bcep18194_B2299	-	ABC efflux pump, fused ATPase and inner membrane subunits
2294	 62.04	-1	2626489..2627202	+	237	78063147	-	Bcep18194_B2300	-	riboflavin synthase subunit alpha
2295	 65.04	0	2627221..2627835	-	204	78063148	-	Bcep18194_B2301	-	hypothetical protein
2296	 70.13	0	2627885..2629126	-	413	78063149	-	Bcep18194_B2302	-	Cl- channel, voltage gated
2297	 72.84	+1	2629380..2630399	-	339	78063150	-	Bcep18194_B2303	-	chemotaxis-specific methylesterase
2298	 70.52	0	2630396..2632705	-	769	78063151	-	Bcep18194_B2304	-	CheA signal transduction histidine kinase
2299	 70.90	+1	2632702..2633409	-	235	78063152	-	Bcep18194_B2305	-	CheW protein
2300	 72.33	+1	2633456..2634868	-	470	78063153	-	Bcep18194_B2306	-	MCP methyltransferase, CheR-type
2301	 71.93	+1	2634865..2635377	-	170	78063154	-	Bcep18194_B2307	-	CheW protein
2302	 67.92	0	2635374..2637050	-	558	78063155	-	Bcep18194_B2308	-	methyl-accepting chemotaxis sensory transducer
2303	 66.49	0	2637174..2638307	-	377	78063156	-	Bcep18194_B2309	-	response regulator receiver sensor signal transduction histidine kinase
2304	 67.87	0	2638791..2640374	-	527	78063157	-	Bcep18194_B2310	-	Na+/H+ antiporter
2305	 66.11	0	2640617..2642050	-	477	78063158	-	Bcep18194_B2311	-	aldehyde dehydrogenase
2306	 64.59	0	2642080..2643720	-	546	78063159	-	Bcep18194_B2312	-	acetolactate synthase
2307	 64.90	0	2644051..2644389	+	112	78063160	-	Bcep18194_B2313	-	hypothetical protein
2308	 65.33	0	2644393..2644692	+	99	78063161	-	Bcep18194_B2314	-	putative transcriptional regulator
2309	 66.51	0	2644741..2646027	-	428	78063162	-	Bcep18194_B2315	-	hypothetical protein
2310	 68.96	0	2646355..2647095	+	246	78063163	-	Bcep18194_B2316	-	IclR family transcriptional regulator
2311	 69.63	0	2647163..2648782	+	539	78063164	-	Bcep18194_B2317	-	membrane protein
2312	 69.37	0	2648807..2649991	+	394	78063165	-	Bcep18194_B2318	-	aminotransferase, class V
2313	 66.53	0	2650039..2650794	+	251	78063166	-	Bcep18194_B2319	-	peptidase E
2314	 67.28	0	2650849..2651994	+	381	78063167	-	Bcep18194_B2320	-	outer membrane protein (porin)-like
2315	 65.42	0	2652074..2653033	+	319	78063168	-	Bcep18194_B2321	-	hypothetical protein
2316	 69.45	0	2653081..2654301	-	406	78063169	-	Bcep18194_B2322	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2317	 66.06	0	2654291..2654617	-	108	78063170	-	Bcep18194_B2323	-	Rieske (2Fe-2S) protein
2318	 61.96	-1	2654638..2655126	-	162	78063171	-	Bcep18194_B2324	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2319	 63.15	-1	2655139..2656446	-	435	78063172	-	Bcep18194_B2325	-	ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein
2320	 70.70	+1	2656618..2657583	+	321	78063173	-	Bcep18194_B2326	-	AraC family transcriptional regulator
2321	 69.92	0	2657731..2658621	-	296	78063174	-	Bcep18194_B2327	-	LysR family transcriptional regulator
2322	 69.05	0	2658713..2659846	+	377	78063175	-	Bcep18194_B2328	-	muconate cycloisomerase
2323	 65.45	0	2659878..2660780	+	300	78063176	-	Bcep18194_B2329	-	catechol dioxygenase
2324	 60.82	-1	2660824..2661114	+	96	78063177	-	Bcep18194_B2330	-	muconolactone delta-isomerase
2325	 63.73	0	2661220..2662410	-	396	78063178	-	Bcep18194_B2331	-	hypothetical protein
2326	 64.13	0	2662560..2663348	-	262	78063179	-	Bcep18194_B2332	-	NAD(P)H dehydrogenase (quinone)
2327	 68.46	0	2663435..2664328	+	297	78063180	-	Bcep18194_B2333	-	LysR family transcriptional regulator
2328	 69.14	0	2664493..2664897	+	134	78063181	-	Bcep18194_B2334	-	hypothetical protein
2329	 67.80	0	2665096..2667129	-	677	78063182	-	Bcep18194_B2335	-	2,4-dienoyl-CoA reductase
2330	 68.62	0	2667242..2668315	+	357	78063183	-	Bcep18194_B2336	-	AraC family transcriptional regulator
2331	 69.02	0	2668312..2669202	-	296	78063184	-	Bcep18194_B2337	-	LysR family transcriptional regulator
2332	 64.76	0	2669358..2669777	+	139	78063185	-	Bcep18194_B2338	-	hypothetical protein
2333	 69.25	0	2669828..2670292	-	154	78063186	-	Bcep18194_B2339	-	aconitase subunit 2
2334	 66.59	0	2670285..2671532	-	415	78063187	-	Bcep18194_B2340	-	aconitase subunit 1
2335	 65.38	0	2671720..2672184	-	154	78063188	-	Bcep18194_B2341	-	MarR family transcriptional regulator
2336	 67.75	0	2672239..2673159	+	306	78063189	-	Bcep18194_B2342	-	LysR family transcriptional regulator
2337	 68.29	0	2673241..2673672	+	143	78063190	-	Bcep18194_B2343	-	hypothetical protein
2338	 68.22	0	2673737..2674831	+	364	78063191	-	Bcep18194_B2344	-	HlyD family secretion protein
2339	 65.52	0	2674845..2676419	+	524	78063192	-	Bcep18194_B2345	-	EmrB/QacA family drug resistance transporter
2340	 65.62	0	2676439..2677875	+	478	78063193	-	Bcep18194_B2346	-	RND efflux system outer membrane lipoprotein
2341	 67.15	0	2678128..2678751	-	207	78063194	-	Bcep18194_B2347	-	lysine exporter protein LysE/YggA
2342	 64.77	0	2678896..2679528	-	210	78063195	-	Bcep18194_B2348	-	glutathione S-transferase-like protein
2343	 62.04	-1	2679678..2680088	-	136	78063196	-	Bcep18194_B2349	-	hypothetical protein
2344	 67.11	0	2680301..2680528	-	75	78063197	-	Bcep18194_B2350	-	hypothetical protein
2345	 60.92	-1	2680572..2680919	-	115	78063198	-	Bcep18194_B2351	-	hypothetical protein
2346	 67.00	0	2681040..2681951	+	303	78063199	-	Bcep18194_B2352	-	LysR family transcriptional regulator
2347	 65.91	0	2682085..2683401	+	438	78063200	-	Bcep18194_B2353	-	major facilitator transporter
2348	 60.97	-1	2683414..2684676	+	420	78063201	-	Bcep18194_B2354	-	amidohydrolase
2349	 38.97	-2	2684974..2685594	-	206	78063202	-	Bcep18194_B2355	-	hypothetical protein
2350	 57.66	-2	2685687..2686508	-	273	78063203	-	Bcep18194_B2356	-	hypothetical protein
2351	 63.39	0	2686581..2688443	-	620	78063204	-	Bcep18194_B2357	-	methyl-accepting chemotaxis sensory transducer
2352	 65.35	0	2688613..2689293	-	226	78063205	-	Bcep18194_B2358	-	OmpA/MotB family outer membrane protein
2353	 66.14	0	2689333..2690097	-	254	78063206	-	Bcep18194_B2359	-	MotA/TolQ/ExbB proton channel
2354	 64.66	0	2690111..2691355	-	414	78063207	-	Bcep18194_B2360	-	cyclic nucleotide-binding protein
2355	 64.53	0	2691633..2692100	-	155	78063208	-	Bcep18194_B2361	-	lytic transglycosylase, catalytic
2356	 70.57	+1	2692154..2692537	-	127	78063209	-	Bcep18194_B2362	-	hypothetical protein
2357	 64.52	0	2692552..2692923	-	123	78063210	-	Bcep18194_B2363	-	hypothetical protein
2358	 64.56	0	2693141..2693803	-	220	78063211	-	Bcep18194_B2364	-	glutathione S-transferase-like protein
2359	 66.30	0	2694092..2695447	+	451	78063212	-	Bcep18194_B2365	-	polyhydroxyalkanoate depolymerase
2360	 69.18	0	2695553..2696029	-	158	78063213	-	Bcep18194_B2366	-	hypothetical protein
2361	 65.52	0	2696543..2696977	-	144	78063214	-	Bcep18194_B2367	-	hypothetical protein
2362	 69.98	0	2697061..2698056	-	331	78063215	-	Bcep18194_B2368	-	ABC sugar transporter, inner membrane subunit
2363	 66.56	0	2698058..2699035	-	325	78063216	-	Bcep18194_B2369	-	ABC sugar transporter, inner membrane subunit
2364	 69.56	0	2699069..2700625	-	518	78063217	-	Bcep18194_B2370	-	ABC sugar transporter, ATPase subunit
2365	 66.67	0	2700675..2701700	-	341	78063218	-	Bcep18194_B2371	-	ABC sugar transporter, periplasmic ligand binding protein
2366	 70.43	0	2701829..2702758	-	309	78063219	-	Bcep18194_B2372	-	aldose 1-epimerase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.