IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2197	 63.70	0	2522768..2524318	-	516	78063050	-	Bcep18194_B2203	-	phospholipase D/transphosphatidylase
2198	 62.30	-1	2524791..2527217	-	808	78063051	-	Bcep18194_B2204	-	RNA polymerase sigma factor RpoD
2199	 64.84	0	2527306..2529222	-	638	78063052	dnaG	Bcep18194_B2205	-	DNA primase
2200	 65.10	0	2529244..2529690	-	148	78063053	-	Bcep18194_B2206	-	hypothetical protein
2201	 53.99	-2	2529901..2530113	-	70	78063054	rpsU	Bcep18194_B2207	-	30S ribosomal protein S21
2202	 69.21	0	2530221..2531441	-	406	78063055	-	Bcep18194_B2208	-	hypothetical protein
2203	 68.01	0	2531572..2532612	+	346	78063056	-	Bcep18194_B2209	-	O-sialoglycoprotein endopeptidase
2204	 64.44	0	2532704..2533513	-	269	78063057	-	Bcep18194_B2210	-	putative GTP cyclohydrolase
2205	 65.14	0	2533668..2535572	-	634	161702975	-	Bcep18194_B2211	-	1-deoxy-D-xylulose-5-phosphate synthase
2206	 68.02	0	2535654..2536538	-	294	78063059	-	Bcep18194_B2212	-	farnesyl-diphosphate synthase
2207	 64.97	0	2536535..2536828	-	97	78063060	-	Bcep18194_B2213	-	exodeoxyribonuclease VII small subunit
2208	 62.42	-1	2537099..2538205	+	368	78063061	-	Bcep18194_B2214	-	Rieske (2Fe-2S) protein
2209	 69.66	0	2538323..2539192	+	289	78063062	-	Bcep18194_B2215	-	3-mercaptopyruvate sulfurtransferase
2210	 65.64	0	2539247..2540122	-	291	78063063	-	Bcep18194_B2216	-	dienelactone hydrolase
2211	 68.32	0	2540546..2541937	-	463	78063064	-	Bcep18194_B2217	-	NADH dehydrogenase
2212	 64.81	0	2542152..2544905	-	917	78063065	-	Bcep18194_B2218	-	DNA polymerase I
2213	 62.71	-1	2544907..2545665	+	252	78063066	-	Bcep18194_B2219	-	hypothetical protein
2214	 69.36	0	2546059..2546355	+	98	78063067	-	Bcep18194_B2220	-	hypothetical protein
2215	 67.37	0	2546527..2547519	+	330	78063068	-	Bcep18194_B2221	-	transcriptional regulator
2216	 67.38	0	2547669..2548232	+	187	78063069	-	Bcep18194_B2222	-	hypothetical protein
2217	 67.20	0	2548511..2549443	-	310	78063070	-	Bcep18194_B2223	-	LysR family transcriptional regulator
2218	 66.67	0	2549566..2550066	+	166	78063071	-	Bcep18194_B2224	-	hypothetical protein
2219	 69.40	0	2550131..2550934	+	267	78063072	-	Bcep18194_B2225	-	Short-chain dehydrogenase/reductase SDR
2220	 64.71	0	2550961..2551932	+	323	78063073	-	Bcep18194_B2226	-	aldo/keto reductase
2221	 66.27	0	2552106..2553632	-	508	78063074	-	Bcep18194_B2227	-	AMP nucleosidase
2222	 67.17	0	2553762..2554157	+	131	78063075	-	Bcep18194_B2228	-	hypothetical protein
2223	 67.87	0	2554259..2555257	+	332	78063076	-	Bcep18194_B2229	-	homoserine kinase
2224	 66.54	0	2555248..2556057	+	269	78063077	-	Bcep18194_B2230	-	hypothetical protein
2225	 66.67	0	2556246..2556698	+	150	78063078	-	Bcep18194_B2231	-	MarR family transcriptional regulator
2226	 65.95	0	2556855..2557274	+	139	78063079	-	Bcep18194_B2232	-	OsmC-like protein
2227	 58.76	-2	2557388..2557564	-	58	78063080	-	Bcep18194_B2233	-	hypothetical protein
2228	 70.54	+1	2557646..2558755	-	369	78063081	-	Bcep18194_B2234	-	esterase, PHB depolymerase
2229	 69.81	0	2559003..2559701	+	232	78063082	-	Bcep18194_B2235	-	phosphoesterase, PA-phosphatase related
2230	 67.58	0	2559764..2560639	+	291	78063083	-	Bcep18194_B2236	-	molybdenum ABC transporter periplasmic-binding protein
2231	 69.91	0	2560650..2561327	+	225	78063084	-	Bcep18194_B2237	-	molybdate ABC transporter inner membrane protein
2232	 69.23	0	2561392..2562093	+	233	78063085	-	Bcep18194_B2238	-	ABC molybdate transporter, ATPase subunit
2233	 69.65	0	2562261..2563097	-	278	78063086	-	Bcep18194_B2239	-	ModE family transcriptional regulator
2234	 70.94	+1	2563146..2564783	-	545	78063087	-	Bcep18194_B2240	-	hypothetical protein
2235	 61.98	-1	2564910..2565293	-	127	78063088	-	Bcep18194_B2241	-	4-oxalocrotonate tautomerase
2236	 73.08	+1	2565409..2566266	+	285	78063089	-	Bcep18194_B2242	-	LysR family transcriptional regulator
2237	 68.83	0	2566308..2567231	+	307	78063090	-	Bcep18194_B2243	-	hypothetical protein
2238	 72.05	+1	2567299..2568078	+	259	78063091	-	Bcep18194_B2244	-	histidine kinase
2239	 66.59	0	2568155..2569498	+	447	78063092	-	Bcep18194_B2245	-	hypothetical protein
2240	 72.82	+1	2569521..2570105	+	194	78063093	-	Bcep18194_B2246	-	thiamine monophosphate synthase
2241	 68.90	0	2570179..2571834	-	551	78063094	-	Bcep18194_B2247	-	glycoside hydrolase family protein
2242	 72.03	+1	2572048..2572848	+	266	78063095	-	Bcep18194_B2248	-	hypothetical protein
2243	 68.16	0	2572988..2573656	+	222	78063096	-	Bcep18194_B2249	-	glutathione S-transferase-like protein
2244	 65.60	0	2573681..2574334	-	217	78063097	-	Bcep18194_B2250	-	hypothetical protein
2245	 73.63	+1	2574472..2575203	+	243	78063098	-	Bcep18194_B2251	-	metallophosphoesterase
2246	 67.53	0	2575236..2575931	-	231	78063099	-	Bcep18194_B2252	-	hypothetical protein
2247	 68.57	0	2575934..2576353	-	139	78063100	-	Bcep18194_B2253	-	hypothetical protein
2248	 64.37	0	2576587..2577369	+	260	78063101	-	Bcep18194_B2254	-	ABC amino acid transporter, periplasmic ligand binding protein
2249	 68.27	0	2577584..2577832	-	82	78063102	-	Bcep18194_B2255	-	hypothetical protein
2250	 69.81	0	2577896..2578213	-	105	78063103	-	Bcep18194_B2256	-	hypothetical protein
2251	 67.70	0	2578500..2578886	+	128	78063104	-	Bcep18194_B2257	-	GtrA-like protein
2252	 66.73	0	2578915..2580396	-	493	78063105	-	Bcep18194_B2258	-	sigma-54 dependent trancsriptional regulator
2253	 68.18	0	2580847..2581770	-	307	78063106	-	Bcep18194_B2259	-	metal-dependent hydrolase-like
2254	 67.08	0	2582043..2582282	+	79	78063107	-	Bcep18194_B2260	-	hypothetical protein
2255	 64.62	0	2582346..2582687	+	113	78063108	-	Bcep18194_B2261	-	peptidylprolyl isomerase
2256	 70.93	+1	2582723..2583496	+	257	78063109	-	Bcep18194_B2262	-	AraC family transcriptional regulator
2257	 73.22	+1	2583688..2585136	+	482	78063110	-	Bcep18194_B2263	-	major facilitator transporter
2258	 65.38	0	2585147..2586082	-	311	78063111	-	Bcep18194_B2264	-	hypothetical protein
2259	 67.73	0	2586151..2586621	-	156	78063112	-	Bcep18194_B2265	-	HxlR family transcriptional regulator
2260	 72.10	+1	2586814..2588010	+	398	78063113	-	Bcep18194_B2266	-	major facilitator transporter
2261	 70.01	0	2588142..2589308	-	388	78063114	-	Bcep18194_B2267	-	glycosyl transferase, group 1
2262	 67.76	0	2589308..2590492	-	394	78063115	-	Bcep18194_B2268	-	glycosyl transferase, group 1
2263	 65.78	0	2590489..2591955	-	488	78063116	-	Bcep18194_B2269	-	hypothetical protein
2264	 69.92	0	2591966..2593102	-	378	78063117	-	Bcep18194_B2270	-	glycosyltransferase-like protein
2265	 71.25	+1	2593152..2594111	-	319	78063118	-	Bcep18194_B2271	-	glycosyl transferase family protein
2266	 67.48	0	2594176..2596401	-	741	78063119	-	Bcep18194_B2272	-	protein-tyrosine kinase
2267	 66.67	0	2596452..2597630	-	392	78063120	-	Bcep18194_B2273	-	polysaccharide export protein
2268	 65.99	0	2597624..2598067	-	147	78063121	-	Bcep18194_B2274	-	protein tyrosine phosphatase
2269	 68.08	0	2598098..2599510	-	470	78063122	-	Bcep18194_B2275	-	UDP-glucose 6-dehydrogenase
2270	 64.85	0	2599591..2600964	-	457	78063123	-	Bcep18194_B2276	-	sugar transferase
2271	 67.58	0	2601393..2602919	+	508	78063124	-	Bcep18194_B2277	-	mannose-1-phosphate guanylyltransferase (GDP)
2272	 67.73	0	2603042..2603983	-	313	78063125	-	Bcep18194_B2278	-	hypothetical protein
2273	 67.18	0	2604715..2605296	-	193	78063126	-	Bcep18194_B2279	-	hypothetical protein
2274	 66.74	0	2605328..2606665	-	445	78063127	-	Bcep18194_B2280	-	Fe-S oxidoreductase-like
2275	 61.70	-1	2606789..2607211	-	140	78063128	-	Bcep18194_B2281	-	rubrerythrin
2276	 72.50	+1	2607647..2608915	-	422	78063129	-	Bcep18194_B2282	-	putative sigma factor
2277	 65.47	0	2608912..2609328	-	138	78063130	-	Bcep18194_B2283	-	glyoxalase/bleomycin resistance protein/dioxygenase
2278	 67.14	0	2609371..2609790	-	139	78063131	-	Bcep18194_B2284	-	hypothetical protein
2279	 68.93	0	2609916..2610269	-	117	78063132	-	Bcep18194_B2285	-	hypothetical protein
2280	 71.17	+1	2610474..2612339	+	621	78063133	-	Bcep18194_B2286	-	endonuclease/exonuclease/phosphatase
2281	 68.99	0	2612625..2613011	+	128	78063134	-	Bcep18194_B2287	-	protein of unknown function DUF883, ElaB
2282	 67.86	0	2613076..2613660	+	194	78063135	-	Bcep18194_B2288	-	hypothetical protein
2283	 64.50	0	2613888..2614949	+	353	78063136	-	Bcep18194_B2289	-	hypothetical protein
2284	 68.99	0	2614993..2615508	-	171	78063137	-	Bcep18194_B2290	-	hypothetical protein
2285	 69.91	0	2615717..2616733	-	338	78063138	-	Bcep18194_B2291	-	zinc-containing alcohol dehydrogenase superfamily protein
2286	 68.95	0	2616771..2617559	-	262	78063139	-	Bcep18194_B2292	-	short chain dehydrogenase
2287	 69.71	0	2618029..2618619	-	196	78063140	-	Bcep18194_B2293	-	phosphoesterase, PA-phosphatase related
2288	 68.87	0	2618701..2620017	-	438	78063141	-	Bcep18194_B2294	-	manganese transport protein MntH
2289	 69.03	0	2620089..2621018	-	309	78063142	-	Bcep18194_B2295	-	AraC family transcriptional regulator
2290	 70.43	0	2621514..2622443	+	309	78063143	-	Bcep18194_B2296	-	LysR family transcriptional regulator
2291	 69.15	0	2622542..2622943	+	133	78063144	-	Bcep18194_B2297	-	OsmC-like protein
2292	 69.27	0	2623046..2623927	-	293	78063145	-	Bcep18194_B2298	-	Dyp-type peroxidase
2293	 70.37	0	2624418..2626280	+	620	78063146	-	Bcep18194_B2299	-	ABC efflux pump, fused ATPase and inner membrane subunits
2294	 62.04	-1	2626489..2627202	+	237	78063147	-	Bcep18194_B2300	-	riboflavin synthase subunit alpha
2295	 65.04	0	2627221..2627835	-	204	78063148	-	Bcep18194_B2301	-	hypothetical protein
2296	 70.13	0	2627885..2629126	-	413	78063149	-	Bcep18194_B2302	-	Cl- channel, voltage gated
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.