IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2155	 63.69	0	2475342..2475677	-	111	78063008	-	Bcep18194_B2161	-	ArsR family transcriptional regulator
2156	 63.94	0	2475898..2476227	+	109	78063009	-	Bcep18194_B2162	-	hypothetical protein
2157	 67.19	0	2476308..2478041	+	577	78063010	-	Bcep18194_B2163	-	sedolisin
2158	 66.11	0	2478190..2479620	+	476	78063011	-	Bcep18194_B2164	-	major facilitator transporter
2159	 65.27	0	2479635..2480567	-	310	78063012	-	Bcep18194_B2165	-	LysR family transcriptional regulator
2160	 70.81	+1	2480653..2482149	-	498	78063013	-	Bcep18194_B2166	-	major facilitator transporter
2161	 66.07	0	2482293..2483129	-	278	78063014	-	Bcep18194_B2167	-	ABC spermidine/putrescine transporter, inner membrane subunit
2162	 66.67	0	2483167..2484423	-	418	78063015	-	Bcep18194_B2168	-	ABC spermidine/putrescine transporter, inner membrane subunit
2163	 64.66	0	2484526..2485572	-	348	78063016	-	Bcep18194_B2169	-	ABC spermidine/putrescine transporter, periplasmic ligand binding protein
2164	 66.58	0	2485650..2486756	-	368	78063017	-	Bcep18194_B2170	-	spermidine/putrescine ABC transporter ATPase
2165	 69.36	0	2486865..2488388	+	507	78063018	-	Bcep18194_B2171	-	GntR family transcriptional regulator
2166	 71.40	+1	2488425..2489459	-	344	78063019	-	Bcep18194_B2172	-	lipase chaperone
2167	 66.12	0	2489463..2490557	-	364	78063020	-	Bcep18194_B2173	-	triacylglycerol lipase
2168	 67.32	0	2490786..2492918	-	710	78063021	-	Bcep18194_B2174	-	TonB-dependent copper receptor
2169	 70.73	+1	2493000..2493368	-	122	78063022	-	Bcep18194_B2175	-	hypothetical protein
2170	 64.62	0	2493524..2494060	-	178	78063023	-	Bcep18194_B2176	-	cytochrome B561
2171	 66.20	0	2494286..2494924	+	212	78063024	-	Bcep18194_B2177	-	hypothetical protein
2172	 70.88	+1	2494973..2495707	-	244	78063025	-	Bcep18194_B2178	-	peptidase M23B
2173	 66.67	0	2496133..2496453	+	106	78063026	-	Bcep18194_B2179	-	hypothetical protein
2174	 65.51	0	2496572..2496916	-	114	78063027	-	Bcep18194_B2180	-	hypothetical protein
2175	 65.39	0	2497118..2498530	-	470	78063028	-	Bcep18194_B2181	-	6-phosphogluconate dehydrogenase
2176	 70.25	0	2498628..2499269	-	213	78063029	-	Bcep18194_B2182	-	hypothetical protein
2177	 70.23	0	2499266..2500303	-	345	78063030	-	Bcep18194_B2183	-	NAD-dependent deacetylase
2178	 65.59	0	2500325..2500603	-	92	78063031	-	Bcep18194_B2184	-	hypothetical protein
2179	 70.78	+1	2500933..2501175	+	80	78063032	-	Bcep18194_B2185	-	hypothetical protein
2180	 70.22	0	2501197..2501928	+	243	78063033	-	Bcep18194_B2186	-	GCN5-related N-acetyltransferase
2181	 61.98	-1	2501950..2502354	-	134	78063034	-	Bcep18194_B2187	-	hypothetical protein
2182	 70.21	0	2502547..2503506	+	319	78063035	-	Bcep18194_B2188	-	flavin-dependent oxidoreductase
2183	 69.18	0	2503807..2506272	+	821	78063036	-	Bcep18194_B2189	-	MscS mechanosensitive ion channel
2184	 67.51	0	2506300..2507133	-	277	78063037	-	Bcep18194_B2190	-	TetR family transcriptional regulator
2185	 68.98	0	2507226..2508347	+	373	78063038	-	Bcep18194_B2191	-	HlyD family secretion protein
2186	 65.72	0	2508340..2509926	+	528	78063039	-	Bcep18194_B2192	-	EmrB/QacA family drug resistance transporter
2187	 68.62	0	2509940..2511427	+	495	78063040	-	Bcep18194_B2193	-	RND efflux system outer membrane lipoprotein
2188	 62.76	-1	2511758..2513293	+	511	78063041	-	Bcep18194_B2194	-	catalase
2189	 67.65	0	2513371..2513982	+	203	78063042	-	Bcep18194_B2195	-	ankyrin repeat-containing protein
2190	 63.91	0	2514062..2514532	+	156	78063043	-	Bcep18194_B2196	-	hypothetical protein
2191	 63.27	-1	2514651..2515445	-	264	78063044	-	Bcep18194_B2197	-	aminoglycoside phosphotransferase
2192	 61.94	-1	2515804..2516163	+	119	78063045	-	Bcep18194_B2198	-	hypothetical protein
2193	 66.34	0	2516227..2518059	+	610	78063046	-	Bcep18194_B2199	-	pseudomonalisin
2194	 67.99	0	2518511..2520172	+	553	78063047	-	Bcep18194_B2200	-	hypothetical protein
2195	 62.06	-1	2520309..2520959	-	216	78063048	-	Bcep18194_B2201	-	flavin-nucleotide-binding protein
2196	 67.62	0	2521279..2522745	+	488	78063049	-	Bcep18194_B2202	-	GntR family transcriptional regulator
2197	 63.70	0	2522768..2524318	-	516	78063050	-	Bcep18194_B2203	-	phospholipase D/transphosphatidylase
2198	 62.30	-1	2524791..2527217	-	808	78063051	-	Bcep18194_B2204	-	RNA polymerase sigma factor RpoD
2199	 64.84	0	2527306..2529222	-	638	78063052	dnaG	Bcep18194_B2205	-	DNA primase
2200	 65.10	0	2529244..2529690	-	148	78063053	-	Bcep18194_B2206	-	hypothetical protein
2201	 53.99	-2	2529901..2530113	-	70	78063054	rpsU	Bcep18194_B2207	-	30S ribosomal protein S21
2202	 69.21	0	2530221..2531441	-	406	78063055	-	Bcep18194_B2208	-	hypothetical protein
2203	 68.01	0	2531572..2532612	+	346	78063056	-	Bcep18194_B2209	-	O-sialoglycoprotein endopeptidase
2204	 64.44	0	2532704..2533513	-	269	78063057	-	Bcep18194_B2210	-	putative GTP cyclohydrolase
2205	 65.14	0	2533668..2535572	-	634	161702975	-	Bcep18194_B2211	-	1-deoxy-D-xylulose-5-phosphate synthase
2206	 68.02	0	2535654..2536538	-	294	78063059	-	Bcep18194_B2212	-	farnesyl-diphosphate synthase
2207	 64.97	0	2536535..2536828	-	97	78063060	-	Bcep18194_B2213	-	exodeoxyribonuclease VII small subunit
2208	 62.42	-1	2537099..2538205	+	368	78063061	-	Bcep18194_B2214	-	Rieske (2Fe-2S) protein
2209	 69.66	0	2538323..2539192	+	289	78063062	-	Bcep18194_B2215	-	3-mercaptopyruvate sulfurtransferase
2210	 65.64	0	2539247..2540122	-	291	78063063	-	Bcep18194_B2216	-	dienelactone hydrolase
2211	 68.32	0	2540546..2541937	-	463	78063064	-	Bcep18194_B2217	-	NADH dehydrogenase
2212	 64.81	0	2542152..2544905	-	917	78063065	-	Bcep18194_B2218	-	DNA polymerase I
2213	 62.71	-1	2544907..2545665	+	252	78063066	-	Bcep18194_B2219	-	hypothetical protein
2214	 69.36	0	2546059..2546355	+	98	78063067	-	Bcep18194_B2220	-	hypothetical protein
2215	 67.37	0	2546527..2547519	+	330	78063068	-	Bcep18194_B2221	-	transcriptional regulator
2216	 67.38	0	2547669..2548232	+	187	78063069	-	Bcep18194_B2222	-	hypothetical protein
2217	 67.20	0	2548511..2549443	-	310	78063070	-	Bcep18194_B2223	-	LysR family transcriptional regulator
2218	 66.67	0	2549566..2550066	+	166	78063071	-	Bcep18194_B2224	-	hypothetical protein
2219	 69.40	0	2550131..2550934	+	267	78063072	-	Bcep18194_B2225	-	Short-chain dehydrogenase/reductase SDR
2220	 64.71	0	2550961..2551932	+	323	78063073	-	Bcep18194_B2226	-	aldo/keto reductase
2221	 66.27	0	2552106..2553632	-	508	78063074	-	Bcep18194_B2227	-	AMP nucleosidase
2222	 67.17	0	2553762..2554157	+	131	78063075	-	Bcep18194_B2228	-	hypothetical protein
2223	 67.87	0	2554259..2555257	+	332	78063076	-	Bcep18194_B2229	-	homoserine kinase
2224	 66.54	0	2555248..2556057	+	269	78063077	-	Bcep18194_B2230	-	hypothetical protein
2225	 66.67	0	2556246..2556698	+	150	78063078	-	Bcep18194_B2231	-	MarR family transcriptional regulator
2226	 65.95	0	2556855..2557274	+	139	78063079	-	Bcep18194_B2232	-	OsmC-like protein
2227	 58.76	-2	2557388..2557564	-	58	78063080	-	Bcep18194_B2233	-	hypothetical protein
2228	 70.54	+1	2557646..2558755	-	369	78063081	-	Bcep18194_B2234	-	esterase, PHB depolymerase
2229	 69.81	0	2559003..2559701	+	232	78063082	-	Bcep18194_B2235	-	phosphoesterase, PA-phosphatase related
2230	 67.58	0	2559764..2560639	+	291	78063083	-	Bcep18194_B2236	-	molybdenum ABC transporter periplasmic-binding protein
2231	 69.91	0	2560650..2561327	+	225	78063084	-	Bcep18194_B2237	-	molybdate ABC transporter inner membrane protein
2232	 69.23	0	2561392..2562093	+	233	78063085	-	Bcep18194_B2238	-	ABC molybdate transporter, ATPase subunit
2233	 69.65	0	2562261..2563097	-	278	78063086	-	Bcep18194_B2239	-	ModE family transcriptional regulator
2234	 70.94	+1	2563146..2564783	-	545	78063087	-	Bcep18194_B2240	-	hypothetical protein
2235	 61.98	-1	2564910..2565293	-	127	78063088	-	Bcep18194_B2241	-	4-oxalocrotonate tautomerase
2236	 73.08	+1	2565409..2566266	+	285	78063089	-	Bcep18194_B2242	-	LysR family transcriptional regulator
2237	 68.83	0	2566308..2567231	+	307	78063090	-	Bcep18194_B2243	-	hypothetical protein
2238	 72.05	+1	2567299..2568078	+	259	78063091	-	Bcep18194_B2244	-	histidine kinase
2239	 66.59	0	2568155..2569498	+	447	78063092	-	Bcep18194_B2245	-	hypothetical protein
2240	 72.82	+1	2569521..2570105	+	194	78063093	-	Bcep18194_B2246	-	thiamine monophosphate synthase
2241	 68.90	0	2570179..2571834	-	551	78063094	-	Bcep18194_B2247	-	glycoside hydrolase family protein
2242	 72.03	+1	2572048..2572848	+	266	78063095	-	Bcep18194_B2248	-	hypothetical protein
2243	 68.16	0	2572988..2573656	+	222	78063096	-	Bcep18194_B2249	-	glutathione S-transferase-like protein
2244	 65.60	0	2573681..2574334	-	217	78063097	-	Bcep18194_B2250	-	hypothetical protein
2245	 73.63	+1	2574472..2575203	+	243	78063098	-	Bcep18194_B2251	-	metallophosphoesterase
2246	 67.53	0	2575236..2575931	-	231	78063099	-	Bcep18194_B2252	-	hypothetical protein
2247	 68.57	0	2575934..2576353	-	139	78063100	-	Bcep18194_B2253	-	hypothetical protein
2248	 64.37	0	2576587..2577369	+	260	78063101	-	Bcep18194_B2254	-	ABC amino acid transporter, periplasmic ligand binding protein
2249	 68.27	0	2577584..2577832	-	82	78063102	-	Bcep18194_B2255	-	hypothetical protein
2250	 69.81	0	2577896..2578213	-	105	78063103	-	Bcep18194_B2256	-	hypothetical protein
2251	 67.70	0	2578500..2578886	+	128	78063104	-	Bcep18194_B2257	-	GtrA-like protein
2252	 66.73	0	2578915..2580396	-	493	78063105	-	Bcep18194_B2258	-	sigma-54 dependent trancsriptional regulator
2253	 68.18	0	2580847..2581770	-	307	78063106	-	Bcep18194_B2259	-	metal-dependent hydrolase-like
2254	 67.08	0	2582043..2582282	+	79	78063107	-	Bcep18194_B2260	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.