IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2121	 67.77	0	2438386..2439198	-	270	78062974	truA	Bcep18194_B2127	-	tRNA pseudouridine synthase A
2122	 70.86	+1	2439198..2441606	-	802	78062975	-	Bcep18194_B2128	-	hypothetical protein
2123	 63.86	0	2442253..2443497	+	414	78062976	flgE	Bcep18194_B2129	-	flagellar hook protein FlgE
2124	 64.88	0	2443602..2444723	-	373	78062977	-	Bcep18194_B2130	-	aspartate-semialdehyde dehydrogenase
2125	 66.10	0	2445023..2446090	-	355	78062978	-	Bcep18194_B2131	-	3-isopropylmalate dehydrogenase
2126	 62.67	-1	2446170..2446820	-	216	78062979	leuD	Bcep18194_B2132	-	isopropylmalate isomerase small subunit
2127	 65.32	0	2447038..2448447	-	469	78062980	-	Bcep18194_B2133	-	isopropylmalate isomerase large subunit
2128	 67.71	0	2448669..2449433	-	254	78062981	-	Bcep18194_B2134	-	hypothetical protein
2129	 68.00	0	2449460..2450281	-	273	78062982	-	Bcep18194_B2135	-	hypothetical protein
2130	 65.12	0	2450683..2451006	+	107	78062983	-	Bcep18194_B2136	-	hypothetical protein
2131	 64.05	0	2451135..2451860	+	241	78062984	-	Bcep18194_B2137	-	glutathione S-transferase-like protein
2132	 66.67	0	2451911..2452309	-	132	78062985	-	Bcep18194_B2138	-	hypothetical protein
2133	 70.85	+1	2452325..2453710	-	461	78062986	-	Bcep18194_B2139	-	major facilitator transporter
2134	 67.65	0	2453926..2454840	+	304	78062987	-	Bcep18194_B2140	-	LysR family transcriptional regulator
2135	 65.43	0	2454939..2456471	-	510	78062988	-	Bcep18194_B2141	-	amino acid transporter
2136	 65.59	0	2456574..2457038	-	154	78062989	-	Bcep18194_B2142	-	AsnC family transcriptional regulator
2137	 68.09	0	2457137..2457907	-	256	78062990	-	Bcep18194_B2143	-	dimethylargininase
2138	 69.86	0	2458105..2459355	-	416	78062991	-	Bcep18194_B2144	-	hypothetical protein
2139	 67.69	0	2459465..2459854	-	129	78062992	-	Bcep18194_B2145	-	glyoxalase/bleomycin resistance protein/dioxygenase
2140	 71.06	+1	2459927..2460904	+	325	78062993	-	Bcep18194_B2146	-	AraC family transcriptional regulator
2141	 60.68	-1	2460994..2462295	-	433	78062994	gltA	Bcep18194_B2147	-	type II citrate synthase
2142	 61.54	-1	2462349..2462621	-	90	78062995	-	Bcep18194_B2148	-	hypothetical protein
2143	 62.39	-1	2462629..2463330	-	233	78062996	sdhB	Bcep18194_B2149	-	succinate dehydrogenase iron-sulfur subunit
2144	 64.64	0	2463352..2465130	-	592	78062997	sdhA	Bcep18194_B2150	-	succinate dehydrogenase flavoprotein subunit
2145	 60.98	-1	2465134..2465502	-	122	78062998	-	Bcep18194_B2151	-	succinate dehydrogenase subunit D
2146	 55.64	-2	2465507..2465923	-	138	78062999	-	Bcep18194_B2152	-	succinate dehydrogenase subunit C
2147	 65.33	0	2466094..2466918	-	274	78063000	-	Bcep18194_B2153	-	GntR family transcriptional regulator
2148	 64.54	0	2467207..2468193	+	328	78063001	-	Bcep18194_B2154	-	malate dehydrogenase
2149	 71.92	+1	2468378..2469385	+	335	78063002	-	Bcep18194_B2155	-	citrate lyase beta subunit-like
2150	 64.53	0	2469616..2470131	+	171	78063003	-	Bcep18194_B2156	-	hypothetical protein
2151	 66.74	0	2470154..2471605	+	483	78063004	prpD	Bcep18194_B2157	-	2-methylcitrate dehydratase
2152	 63.94	0	2471658..2474375	+	905	78063005	acnA	Bcep18194_B2158	-	aconitate hydratase
2153	 66.21	0	2474480..2474914	-	144	78063006	-	Bcep18194_B2159	-	hypothetical protein
2154	 68.75	0	2474911..2475342	-	143	78063007	-	Bcep18194_B2160	-	hypothetical protein
2155	 63.69	0	2475342..2475677	-	111	78063008	-	Bcep18194_B2161	-	ArsR family transcriptional regulator
2156	 63.94	0	2475898..2476227	+	109	78063009	-	Bcep18194_B2162	-	hypothetical protein
2157	 67.19	0	2476308..2478041	+	577	78063010	-	Bcep18194_B2163	-	sedolisin
2158	 66.11	0	2478190..2479620	+	476	78063011	-	Bcep18194_B2164	-	major facilitator transporter
2159	 65.27	0	2479635..2480567	-	310	78063012	-	Bcep18194_B2165	-	LysR family transcriptional regulator
2160	 70.81	+1	2480653..2482149	-	498	78063013	-	Bcep18194_B2166	-	major facilitator transporter
2161	 66.07	0	2482293..2483129	-	278	78063014	-	Bcep18194_B2167	-	ABC spermidine/putrescine transporter, inner membrane subunit
2162	 66.67	0	2483167..2484423	-	418	78063015	-	Bcep18194_B2168	-	ABC spermidine/putrescine transporter, inner membrane subunit
2163	 64.66	0	2484526..2485572	-	348	78063016	-	Bcep18194_B2169	-	ABC spermidine/putrescine transporter, periplasmic ligand binding protein
2164	 66.58	0	2485650..2486756	-	368	78063017	-	Bcep18194_B2170	-	spermidine/putrescine ABC transporter ATPase
2165	 69.36	0	2486865..2488388	+	507	78063018	-	Bcep18194_B2171	-	GntR family transcriptional regulator
2166	 71.40	+1	2488425..2489459	-	344	78063019	-	Bcep18194_B2172	-	lipase chaperone
2167	 66.12	0	2489463..2490557	-	364	78063020	-	Bcep18194_B2173	-	triacylglycerol lipase
2168	 67.32	0	2490786..2492918	-	710	78063021	-	Bcep18194_B2174	-	TonB-dependent copper receptor
2169	 70.73	+1	2493000..2493368	-	122	78063022	-	Bcep18194_B2175	-	hypothetical protein
2170	 64.62	0	2493524..2494060	-	178	78063023	-	Bcep18194_B2176	-	cytochrome B561
2171	 66.20	0	2494286..2494924	+	212	78063024	-	Bcep18194_B2177	-	hypothetical protein
2172	 70.88	+1	2494973..2495707	-	244	78063025	-	Bcep18194_B2178	-	peptidase M23B
2173	 66.67	0	2496133..2496453	+	106	78063026	-	Bcep18194_B2179	-	hypothetical protein
2174	 65.51	0	2496572..2496916	-	114	78063027	-	Bcep18194_B2180	-	hypothetical protein
2175	 65.39	0	2497118..2498530	-	470	78063028	-	Bcep18194_B2181	-	6-phosphogluconate dehydrogenase
2176	 70.25	0	2498628..2499269	-	213	78063029	-	Bcep18194_B2182	-	hypothetical protein
2177	 70.23	0	2499266..2500303	-	345	78063030	-	Bcep18194_B2183	-	NAD-dependent deacetylase
2178	 65.59	0	2500325..2500603	-	92	78063031	-	Bcep18194_B2184	-	hypothetical protein
2179	 70.78	+1	2500933..2501175	+	80	78063032	-	Bcep18194_B2185	-	hypothetical protein
2180	 70.22	0	2501197..2501928	+	243	78063033	-	Bcep18194_B2186	-	GCN5-related N-acetyltransferase
2181	 61.98	-1	2501950..2502354	-	134	78063034	-	Bcep18194_B2187	-	hypothetical protein
2182	 70.21	0	2502547..2503506	+	319	78063035	-	Bcep18194_B2188	-	flavin-dependent oxidoreductase
2183	 69.18	0	2503807..2506272	+	821	78063036	-	Bcep18194_B2189	-	MscS mechanosensitive ion channel
2184	 67.51	0	2506300..2507133	-	277	78063037	-	Bcep18194_B2190	-	TetR family transcriptional regulator
2185	 68.98	0	2507226..2508347	+	373	78063038	-	Bcep18194_B2191	-	HlyD family secretion protein
2186	 65.72	0	2508340..2509926	+	528	78063039	-	Bcep18194_B2192	-	EmrB/QacA family drug resistance transporter
2187	 68.62	0	2509940..2511427	+	495	78063040	-	Bcep18194_B2193	-	RND efflux system outer membrane lipoprotein
2188	 62.76	-1	2511758..2513293	+	511	78063041	-	Bcep18194_B2194	-	catalase
2189	 67.65	0	2513371..2513982	+	203	78063042	-	Bcep18194_B2195	-	ankyrin repeat-containing protein
2190	 63.91	0	2514062..2514532	+	156	78063043	-	Bcep18194_B2196	-	hypothetical protein
2191	 63.27	-1	2514651..2515445	-	264	78063044	-	Bcep18194_B2197	-	aminoglycoside phosphotransferase
2192	 61.94	-1	2515804..2516163	+	119	78063045	-	Bcep18194_B2198	-	hypothetical protein
2193	 66.34	0	2516227..2518059	+	610	78063046	-	Bcep18194_B2199	-	pseudomonalisin
2194	 67.99	0	2518511..2520172	+	553	78063047	-	Bcep18194_B2200	-	hypothetical protein
2195	 62.06	-1	2520309..2520959	-	216	78063048	-	Bcep18194_B2201	-	flavin-nucleotide-binding protein
2196	 67.62	0	2521279..2522745	+	488	78063049	-	Bcep18194_B2202	-	GntR family transcriptional regulator
2197	 63.70	0	2522768..2524318	-	516	78063050	-	Bcep18194_B2203	-	phospholipase D/transphosphatidylase
2198	 62.30	-1	2524791..2527217	-	808	78063051	-	Bcep18194_B2204	-	RNA polymerase sigma factor RpoD
2199	 64.84	0	2527306..2529222	-	638	78063052	dnaG	Bcep18194_B2205	-	DNA primase
2200	 65.10	0	2529244..2529690	-	148	78063053	-	Bcep18194_B2206	-	hypothetical protein
2201	 53.99	-2	2529901..2530113	-	70	78063054	rpsU	Bcep18194_B2207	-	30S ribosomal protein S21
2202	 69.21	0	2530221..2531441	-	406	78063055	-	Bcep18194_B2208	-	hypothetical protein
2203	 68.01	0	2531572..2532612	+	346	78063056	-	Bcep18194_B2209	-	O-sialoglycoprotein endopeptidase
2204	 64.44	0	2532704..2533513	-	269	78063057	-	Bcep18194_B2210	-	putative GTP cyclohydrolase
2205	 65.14	0	2533668..2535572	-	634	161702975	-	Bcep18194_B2211	-	1-deoxy-D-xylulose-5-phosphate synthase
2206	 68.02	0	2535654..2536538	-	294	78063059	-	Bcep18194_B2212	-	farnesyl-diphosphate synthase
2207	 64.97	0	2536535..2536828	-	97	78063060	-	Bcep18194_B2213	-	exodeoxyribonuclease VII small subunit
2208	 62.42	-1	2537099..2538205	+	368	78063061	-	Bcep18194_B2214	-	Rieske (2Fe-2S) protein
2209	 69.66	0	2538323..2539192	+	289	78063062	-	Bcep18194_B2215	-	3-mercaptopyruvate sulfurtransferase
2210	 65.64	0	2539247..2540122	-	291	78063063	-	Bcep18194_B2216	-	dienelactone hydrolase
2211	 68.32	0	2540546..2541937	-	463	78063064	-	Bcep18194_B2217	-	NADH dehydrogenase
2212	 64.81	0	2542152..2544905	-	917	78063065	-	Bcep18194_B2218	-	DNA polymerase I
2213	 62.71	-1	2544907..2545665	+	252	78063066	-	Bcep18194_B2219	-	hypothetical protein
2214	 69.36	0	2546059..2546355	+	98	78063067	-	Bcep18194_B2220	-	hypothetical protein
2215	 67.37	0	2546527..2547519	+	330	78063068	-	Bcep18194_B2221	-	transcriptional regulator
2216	 67.38	0	2547669..2548232	+	187	78063069	-	Bcep18194_B2222	-	hypothetical protein
2217	 67.20	0	2548511..2549443	-	310	78063070	-	Bcep18194_B2223	-	LysR family transcriptional regulator
2218	 66.67	0	2549566..2550066	+	166	78063071	-	Bcep18194_B2224	-	hypothetical protein
2219	 69.40	0	2550131..2550934	+	267	78063072	-	Bcep18194_B2225	-	Short-chain dehydrogenase/reductase SDR
2220	 64.71	0	2550961..2551932	+	323	78063073	-	Bcep18194_B2226	-	aldo/keto reductase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.