IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2080	 69.92	0	2388559..2389296	-	245	78062933	-	Bcep18194_B2086	-	Short-chain dehydrogenase/reductase SDR
2081	 68.13	0	2389400..2390356	+	318	78062934	-	Bcep18194_B2087	-	LysR family transcriptional regulator
2082	 67.31	0	2390508..2391896	+	462	78062935	-	Bcep18194_B2088	-	xanthine/uracil transporter
2083	 65.83	0	2392062..2392778	-	238	78062936	-	Bcep18194_B2089	-	Short-chain dehydrogenase/reductase SDR
2084	 62.68	-1	2393101..2393526	+	141	78062937	-	Bcep18194_B2090	-	NUDIX hydrolase
2085	 59.16	-2	2393549..2393881	+	110	78062938	-	Bcep18194_B2091	-	hypothetical protein
2086	 62.21	-1	2394040..2395227	-	395	78062939	-	Bcep18194_B2092	-	adenylate/guanylate cyclase
2087	 63.97	0	2395255..2396847	-	530	78062940	-	Bcep18194_B2093	-	PAS/PAC sensor hybrid histidine kinase
2088	 59.26	-2	2397680..2398435	-	251	78062941	-	Bcep18194_B2094	-	filamentation induced by cAMP protein Fic
2089	 71.03	+1	2398620..2400545	-	641	78062942	-	Bcep18194_B2095	-	selenocysteine-specific translation elongation factor SelB
2090	 71.18	+1	2400542..2401981	-	479	78062943	-	Bcep18194_B2096	-	selenocysteine synthase
2091	 67.09	0	2402055..2403005	-	316	78062944	-	Bcep18194_B2097	-	formate dehydrogenase accessory protein
2092	 63.00	-1	2403098..2403724	-	208	78062945	-	Bcep18194_B2098	-	formate dehydrogenase gamma subunit
2093	 64.59	0	2403721..2404635	-	304	78062946	-	Bcep18194_B2099	-	formate dehydrogenase beta subunit
2094	 63.83	0	2404646..2407114	-	822	78062947	-	Bcep18194_B2100	-	formate dehydrogenase alpha subunit
2095	 63.45	0	2407127..2407717	-	196	78062948	-	Bcep18194_B2101	-	molybdopterin oxidoreductase
2096	 67.84	0	2407860..2408795	+	311	78062949	-	Bcep18194_B2102	-	ribonuclease BN
2097	 63.73	0	2409199..2410356	+	385	78062950	-	Bcep18194_B2103	-	outer membrane protein (porin)
2098	 65.40	0	2410748..2411221	+	157	78062951	-	Bcep18194_B2104	-	3-demethylubiquinone-9 3-methyltransferase
2099	 68.69	0	2411373..2412164	-	263	78062952	-	Bcep18194_B2105	-	aminoglycoside resistance protein
2100	 62.44	-1	2412444..2412893	-	149	78062953	-	Bcep18194_B2106	-	histone-like DNA-binding protein
2101	 67.92	0	2413151..2414269	+	372	78062954	-	Bcep18194_B2107	-	acyltransferase 3
2102	 63.14	-1	2414328..2414582	-	84	78062955	-	Bcep18194_B2108	-	hypothetical protein
2103	 63.74	0	2414876..2415763	-	295	78062956	-	Bcep18194_B2109	-	UDP-glucose pyrophosphorylase
2104	 69.22	0	2416355..2417530	+	391	78062957	-	Bcep18194_B2110	-	acyltransferase 3
2105	 68.82	0	2418070..2420535	-	821	78062958	-	Bcep18194_B2111	-	glycosyl transferase, group 1
2106	 66.33	0	2420532..2422028	-	498	78062959	-	Bcep18194_B2112	-	polysaccharide biosynthesis protein
2107	 68.74	0	2422025..2424241	-	738	78062960	-	Bcep18194_B2113	-	hypothetical protein
2108	 69.11	0	2424716..2425780	+	354	78062961	-	Bcep18194_B2114	-	acyltransferase 3
2109	 64.28	0	2425816..2426862	+	348	78062962	-	Bcep18194_B2115	-	GDP-mannose 4,6-dehydratase
2110	 68.93	0	2426849..2427820	+	323	78062963	-	Bcep18194_B2116	-	NAD-dependent epimerase/dehydratase
2111	 65.83	0	2427931..2429121	-	396	78062964	-	Bcep18194_B2117	-	O-succinylhomoserine sulfhydrylase
2112	 64.32	0	2429367..2430899	-	510	78062965	-	Bcep18194_B2118	-	amidophosphoribosyltransferase
2113	 66.67	0	2430951..2431445	-	164	78062966	-	Bcep18194_B2119	-	colicin V production protein
2114	 70.80	+1	2431452..2432297	-	281	78062967	-	Bcep18194_B2120	-	hypothetical protein
2115	 66.36	0	2432327..2433637	-	436	78062968	-	Bcep18194_B2121	-	folylpolyglutamate synthetase
2116	 65.52	0	2433738..2434610	-	290	78062969	-	Bcep18194_B2122	-	acetyl-CoA carboxylase subunit beta
2117	 66.91	0	2434675..2435490	-	271	78062970	trpA	Bcep18194_B2123	-	tryptophan synthase subunit alpha
2118	 65.73	0	2435579..2436430	-	283	78062971	-	Bcep18194_B2124	-	DNA methylase N-4/N-6
2119	 65.75	0	2436440..2437633	-	397	78062972	-	Bcep18194_B2125	-	tryptophan synthase subunit beta
2120	 68.66	0	2437688..2438389	-	233	78062973	-	Bcep18194_B2126	-	N-(5'-phosphoribosyl)anthranilate isomerase
2121	 67.77	0	2438386..2439198	-	270	78062974	truA	Bcep18194_B2127	-	tRNA pseudouridine synthase A
2122	 70.86	+1	2439198..2441606	-	802	78062975	-	Bcep18194_B2128	-	hypothetical protein
2123	 63.86	0	2442253..2443497	+	414	78062976	flgE	Bcep18194_B2129	-	flagellar hook protein FlgE
2124	 64.88	0	2443602..2444723	-	373	78062977	-	Bcep18194_B2130	-	aspartate-semialdehyde dehydrogenase
2125	 66.10	0	2445023..2446090	-	355	78062978	-	Bcep18194_B2131	-	3-isopropylmalate dehydrogenase
2126	 62.67	-1	2446170..2446820	-	216	78062979	leuD	Bcep18194_B2132	-	isopropylmalate isomerase small subunit
2127	 65.32	0	2447038..2448447	-	469	78062980	-	Bcep18194_B2133	-	isopropylmalate isomerase large subunit
2128	 67.71	0	2448669..2449433	-	254	78062981	-	Bcep18194_B2134	-	hypothetical protein
2129	 68.00	0	2449460..2450281	-	273	78062982	-	Bcep18194_B2135	-	hypothetical protein
2130	 65.12	0	2450683..2451006	+	107	78062983	-	Bcep18194_B2136	-	hypothetical protein
2131	 64.05	0	2451135..2451860	+	241	78062984	-	Bcep18194_B2137	-	glutathione S-transferase-like protein
2132	 66.67	0	2451911..2452309	-	132	78062985	-	Bcep18194_B2138	-	hypothetical protein
2133	 70.85	+1	2452325..2453710	-	461	78062986	-	Bcep18194_B2139	-	major facilitator transporter
2134	 67.65	0	2453926..2454840	+	304	78062987	-	Bcep18194_B2140	-	LysR family transcriptional regulator
2135	 65.43	0	2454939..2456471	-	510	78062988	-	Bcep18194_B2141	-	amino acid transporter
2136	 65.59	0	2456574..2457038	-	154	78062989	-	Bcep18194_B2142	-	AsnC family transcriptional regulator
2137	 68.09	0	2457137..2457907	-	256	78062990	-	Bcep18194_B2143	-	dimethylargininase
2138	 69.86	0	2458105..2459355	-	416	78062991	-	Bcep18194_B2144	-	hypothetical protein
2139	 67.69	0	2459465..2459854	-	129	78062992	-	Bcep18194_B2145	-	glyoxalase/bleomycin resistance protein/dioxygenase
2140	 71.06	+1	2459927..2460904	+	325	78062993	-	Bcep18194_B2146	-	AraC family transcriptional regulator
2141	 60.68	-1	2460994..2462295	-	433	78062994	gltA	Bcep18194_B2147	-	type II citrate synthase
2142	 61.54	-1	2462349..2462621	-	90	78062995	-	Bcep18194_B2148	-	hypothetical protein
2143	 62.39	-1	2462629..2463330	-	233	78062996	sdhB	Bcep18194_B2149	-	succinate dehydrogenase iron-sulfur subunit
2144	 64.64	0	2463352..2465130	-	592	78062997	sdhA	Bcep18194_B2150	-	succinate dehydrogenase flavoprotein subunit
2145	 60.98	-1	2465134..2465502	-	122	78062998	-	Bcep18194_B2151	-	succinate dehydrogenase subunit D
2146	 55.64	-2	2465507..2465923	-	138	78062999	-	Bcep18194_B2152	-	succinate dehydrogenase subunit C
2147	 65.33	0	2466094..2466918	-	274	78063000	-	Bcep18194_B2153	-	GntR family transcriptional regulator
2148	 64.54	0	2467207..2468193	+	328	78063001	-	Bcep18194_B2154	-	malate dehydrogenase
2149	 71.92	+1	2468378..2469385	+	335	78063002	-	Bcep18194_B2155	-	citrate lyase beta subunit-like
2150	 64.53	0	2469616..2470131	+	171	78063003	-	Bcep18194_B2156	-	hypothetical protein
2151	 66.74	0	2470154..2471605	+	483	78063004	prpD	Bcep18194_B2157	-	2-methylcitrate dehydratase
2152	 63.94	0	2471658..2474375	+	905	78063005	acnA	Bcep18194_B2158	-	aconitate hydratase
2153	 66.21	0	2474480..2474914	-	144	78063006	-	Bcep18194_B2159	-	hypothetical protein
2154	 68.75	0	2474911..2475342	-	143	78063007	-	Bcep18194_B2160	-	hypothetical protein
2155	 63.69	0	2475342..2475677	-	111	78063008	-	Bcep18194_B2161	-	ArsR family transcriptional regulator
2156	 63.94	0	2475898..2476227	+	109	78063009	-	Bcep18194_B2162	-	hypothetical protein
2157	 67.19	0	2476308..2478041	+	577	78063010	-	Bcep18194_B2163	-	sedolisin
2158	 66.11	0	2478190..2479620	+	476	78063011	-	Bcep18194_B2164	-	major facilitator transporter
2159	 65.27	0	2479635..2480567	-	310	78063012	-	Bcep18194_B2165	-	LysR family transcriptional regulator
2160	 70.81	+1	2480653..2482149	-	498	78063013	-	Bcep18194_B2166	-	major facilitator transporter
2161	 66.07	0	2482293..2483129	-	278	78063014	-	Bcep18194_B2167	-	ABC spermidine/putrescine transporter, inner membrane subunit
2162	 66.67	0	2483167..2484423	-	418	78063015	-	Bcep18194_B2168	-	ABC spermidine/putrescine transporter, inner membrane subunit
2163	 64.66	0	2484526..2485572	-	348	78063016	-	Bcep18194_B2169	-	ABC spermidine/putrescine transporter, periplasmic ligand binding protein
2164	 66.58	0	2485650..2486756	-	368	78063017	-	Bcep18194_B2170	-	spermidine/putrescine ABC transporter ATPase
2165	 69.36	0	2486865..2488388	+	507	78063018	-	Bcep18194_B2171	-	GntR family transcriptional regulator
2166	 71.40	+1	2488425..2489459	-	344	78063019	-	Bcep18194_B2172	-	lipase chaperone
2167	 66.12	0	2489463..2490557	-	364	78063020	-	Bcep18194_B2173	-	triacylglycerol lipase
2168	 67.32	0	2490786..2492918	-	710	78063021	-	Bcep18194_B2174	-	TonB-dependent copper receptor
2169	 70.73	+1	2493000..2493368	-	122	78063022	-	Bcep18194_B2175	-	hypothetical protein
2170	 64.62	0	2493524..2494060	-	178	78063023	-	Bcep18194_B2176	-	cytochrome B561
2171	 66.20	0	2494286..2494924	+	212	78063024	-	Bcep18194_B2177	-	hypothetical protein
2172	 70.88	+1	2494973..2495707	-	244	78063025	-	Bcep18194_B2178	-	peptidase M23B
2173	 66.67	0	2496133..2496453	+	106	78063026	-	Bcep18194_B2179	-	hypothetical protein
2174	 65.51	0	2496572..2496916	-	114	78063027	-	Bcep18194_B2180	-	hypothetical protein
2175	 65.39	0	2497118..2498530	-	470	78063028	-	Bcep18194_B2181	-	6-phosphogluconate dehydrogenase
2176	 70.25	0	2498628..2499269	-	213	78063029	-	Bcep18194_B2182	-	hypothetical protein
2177	 70.23	0	2499266..2500303	-	345	78063030	-	Bcep18194_B2183	-	NAD-dependent deacetylase
2178	 65.59	0	2500325..2500603	-	92	78063031	-	Bcep18194_B2184	-	hypothetical protein
2179	 70.78	+1	2500933..2501175	+	80	78063032	-	Bcep18194_B2185	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.