IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2034	 70.81	+1	2335303..2335809	-	168	78062887	-	Bcep18194_B2038	-	hypothetical protein
2035	 66.54	0	2335950..2337500	+	516	78062888	-	Bcep18194_B2039	-	cytosine/purines, uracil, thiamine, allantoin transporter
2036	 69.82	0	2337523..2338251	+	242	78062889	-	Bcep18194_B2040	-	Asp/Glu racemase
2037	 70.49	0	2338313..2339488	+	391	78062890	-	Bcep18194_B2041	-	LysR family transcriptional regulator
2038	 69.64	0	2339624..2340565	-	313	78062891	-	Bcep18194_B2042	-	auxin efflux carrier
2039	 74.05	+1	2340653..2342224	-	523	78062892	-	Bcep18194_B2043	-	major facilitator transporter
2040	 73.83	+1	2342325..2343203	+	292	78062893	-	Bcep18194_B2044	-	LysR family transcriptional regulator
2041	 73.05	+1	2343372..2344358	+	328	78062894	-	Bcep18194_B2045	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2042	 73.87	+1	2344381..2344755	-	124	78062895	-	Bcep18194_B2046	-	hypothetical protein
2043	 68.06	0	2345103..2346182	+	359	78062896	-	Bcep18194_B2047	-	glycosyl transferase family protein
2044	 71.29	+1	2346198..2347451	+	417	78062897	-	Bcep18194_B2048	-	hypothetical protein
2045	 67.92	0	2347424..2348464	-	346	78062898	-	Bcep18194_B2049	-	hypothetical protein
2046	 68.76	0	2348457..2348885	-	142	78062899	-	Bcep18194_B2050	-	TadE-like protein
2047	 73.49	+1	2348882..2349760	-	292	78062900	-	Bcep18194_B2051	-	TPR repeat-containing protein
2048	 70.16	0	2349757..2350701	-	314	78062901	-	Bcep18194_B2052	-	type II secretion system protein
2049	 69.94	0	2350698..2351675	-	325	78062902	-	Bcep18194_B2053	-	type II secretion system protein
2050	 69.26	0	2351672..2353096	-	474	78062903	-	Bcep18194_B2054	-	type II secretion system protein E
2051	 67.71	0	2353093..2354340	-	415	78062904	-	Bcep18194_B2055	-	response regulator receiver domain-containing protein
2052	 71.39	+1	2354337..2354717	-	126	78062905	-	Bcep18194_B2056	-	hypothetical protein
2053	 68.55	0	2354733..2356115	-	460	78062906	-	Bcep18194_B2057	-	type II and III secretion system protein
2054	 74.73	+2	2356170..2357198	-	342	78062907	-	Bcep18194_B2058	-	Flp pilus assembly CpaB
2055	 74.05	+1	2357219..2357692	-	157	78062908	-	Bcep18194_B2059	-	peptidase A24A, prepilin type IV
2056	 62.77	-1	2357781..2358062	-	93	78062909	-	Bcep18194_B2060	-	Flp/Fap pilin component
2057	 66.01	0	2358821..2359888	+	355	78062910	-	Bcep18194_B2061	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2058	 70.46	0	2359904..2360746	+	280	78062911	-	Bcep18194_B2062	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2059	 71.05	+1	2360786..2361607	+	273	78062912	-	Bcep18194_B2063	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2060	 70.69	+1	2361646..2362491	+	281	78062913	-	Bcep18194_B2064	-	nitrate/sulfonate/bicarbonate ABC transporter ATPase
2061	 69.18	0	2362640..2363593	+	317	78062914	-	Bcep18194_B2065	-	taurine dioxygenase
2062	 68.57	0	2363752..2364699	+	315	78062915	-	Bcep18194_B2066	-	taurine dioxygenase
2063	 66.61	0	2364799..2366460	-	553	78062916	-	Bcep18194_B2067	-	ABC peptide transporter, periplasmic ligand binding protein
2064	 69.61	0	2366752..2367159	+	135	78062917	-	Bcep18194_B2068	-	hypothetical protein
2065	 68.38	0	2367536..2368528	+	330	78062918	-	Bcep18194_B2069	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
2066	 68.72	0	2368568..2369152	-	194	78062919	-	Bcep18194_B2070	-	hypothetical protein
2067	 69.20	0	2369327..2370235	+	302	78062920	-	Bcep18194_B2071	-	LysR family transcriptional regulator
2068	 67.14	0	2371689..2373989	-	766	78062921	-	Bcep18194_B2074	-	response regulator receiver domain-containing protein
2069	 65.20	0	2374499..2376679	+	726	78062922	-	Bcep18194_B2075	-	ornithine decarboxylase
2070	 71.07	+1	2376896..2378077	+	393	78062923	-	Bcep18194_B2076	-	major facilitator transporter
2071	 70.12	0	2378115..2379272	-	385	78062924	-	Bcep18194_B2077	-	Iron-containing alcohol dehydrogenase
2072	 63.10	-1	2379269..2379604	-	111	78062925	-	Bcep18194_B2078	-	antibiotic biosynthesis monooxygenase
2073	 67.53	0	2379633..2380208	-	191	78062926	-	Bcep18194_B2079	-	glycerol-3-phosphate responsive antiterminator (mRNA-binding)-like
2074	 69.74	0	2380214..2381776	-	520	78062927	-	Bcep18194_B2080	-	FAD linked oxidase-like
2075	 68.51	0	2381773..2383452	-	559	78062928	-	Bcep18194_B2081	-	FAD dependent oxidoreductase
2076	 70.82	+1	2383471..2385012	-	513	78062929	-	Bcep18194_B2082	-	glycerol kinase
2077	 66.08	0	2385009..2386532	-	507	78062930	-	Bcep18194_B2083	-	major facilitator transporter
2078	 66.95	0	2386723..2387439	-	238	78062931	-	Bcep18194_B2084	-	Short-chain dehydrogenase/reductase SDR
2079	 71.57	+1	2387573..2388550	+	325	78062932	-	Bcep18194_B2085	-	LysR family transcriptional regulator
2080	 69.92	0	2388559..2389296	-	245	78062933	-	Bcep18194_B2086	-	Short-chain dehydrogenase/reductase SDR
2081	 68.13	0	2389400..2390356	+	318	78062934	-	Bcep18194_B2087	-	LysR family transcriptional regulator
2082	 67.31	0	2390508..2391896	+	462	78062935	-	Bcep18194_B2088	-	xanthine/uracil transporter
2083	 65.83	0	2392062..2392778	-	238	78062936	-	Bcep18194_B2089	-	Short-chain dehydrogenase/reductase SDR
2084	 62.68	-1	2393101..2393526	+	141	78062937	-	Bcep18194_B2090	-	NUDIX hydrolase
2085	 59.16	-2	2393549..2393881	+	110	78062938	-	Bcep18194_B2091	-	hypothetical protein
2086	 62.21	-1	2394040..2395227	-	395	78062939	-	Bcep18194_B2092	-	adenylate/guanylate cyclase
2087	 63.97	0	2395255..2396847	-	530	78062940	-	Bcep18194_B2093	-	PAS/PAC sensor hybrid histidine kinase
2088	 59.26	-2	2397680..2398435	-	251	78062941	-	Bcep18194_B2094	-	filamentation induced by cAMP protein Fic
2089	 71.03	+1	2398620..2400545	-	641	78062942	-	Bcep18194_B2095	-	selenocysteine-specific translation elongation factor SelB
2090	 71.18	+1	2400542..2401981	-	479	78062943	-	Bcep18194_B2096	-	selenocysteine synthase
2091	 67.09	0	2402055..2403005	-	316	78062944	-	Bcep18194_B2097	-	formate dehydrogenase accessory protein
2092	 63.00	-1	2403098..2403724	-	208	78062945	-	Bcep18194_B2098	-	formate dehydrogenase gamma subunit
2093	 64.59	0	2403721..2404635	-	304	78062946	-	Bcep18194_B2099	-	formate dehydrogenase beta subunit
2094	 63.83	0	2404646..2407114	-	822	78062947	-	Bcep18194_B2100	-	formate dehydrogenase alpha subunit
2095	 63.45	0	2407127..2407717	-	196	78062948	-	Bcep18194_B2101	-	molybdopterin oxidoreductase
2096	 67.84	0	2407860..2408795	+	311	78062949	-	Bcep18194_B2102	-	ribonuclease BN
2097	 63.73	0	2409199..2410356	+	385	78062950	-	Bcep18194_B2103	-	outer membrane protein (porin)
2098	 65.40	0	2410748..2411221	+	157	78062951	-	Bcep18194_B2104	-	3-demethylubiquinone-9 3-methyltransferase
2099	 68.69	0	2411373..2412164	-	263	78062952	-	Bcep18194_B2105	-	aminoglycoside resistance protein
2100	 62.44	-1	2412444..2412893	-	149	78062953	-	Bcep18194_B2106	-	histone-like DNA-binding protein
2101	 67.92	0	2413151..2414269	+	372	78062954	-	Bcep18194_B2107	-	acyltransferase 3
2102	 63.14	-1	2414328..2414582	-	84	78062955	-	Bcep18194_B2108	-	hypothetical protein
2103	 63.74	0	2414876..2415763	-	295	78062956	-	Bcep18194_B2109	-	UDP-glucose pyrophosphorylase
2104	 69.22	0	2416355..2417530	+	391	78062957	-	Bcep18194_B2110	-	acyltransferase 3
2105	 68.82	0	2418070..2420535	-	821	78062958	-	Bcep18194_B2111	-	glycosyl transferase, group 1
2106	 66.33	0	2420532..2422028	-	498	78062959	-	Bcep18194_B2112	-	polysaccharide biosynthesis protein
2107	 68.74	0	2422025..2424241	-	738	78062960	-	Bcep18194_B2113	-	hypothetical protein
2108	 69.11	0	2424716..2425780	+	354	78062961	-	Bcep18194_B2114	-	acyltransferase 3
2109	 64.28	0	2425816..2426862	+	348	78062962	-	Bcep18194_B2115	-	GDP-mannose 4,6-dehydratase
2110	 68.93	0	2426849..2427820	+	323	78062963	-	Bcep18194_B2116	-	NAD-dependent epimerase/dehydratase
2111	 65.83	0	2427931..2429121	-	396	78062964	-	Bcep18194_B2117	-	O-succinylhomoserine sulfhydrylase
2112	 64.32	0	2429367..2430899	-	510	78062965	-	Bcep18194_B2118	-	amidophosphoribosyltransferase
2113	 66.67	0	2430951..2431445	-	164	78062966	-	Bcep18194_B2119	-	colicin V production protein
2114	 70.80	+1	2431452..2432297	-	281	78062967	-	Bcep18194_B2120	-	hypothetical protein
2115	 66.36	0	2432327..2433637	-	436	78062968	-	Bcep18194_B2121	-	folylpolyglutamate synthetase
2116	 65.52	0	2433738..2434610	-	290	78062969	-	Bcep18194_B2122	-	acetyl-CoA carboxylase subunit beta
2117	 66.91	0	2434675..2435490	-	271	78062970	trpA	Bcep18194_B2123	-	tryptophan synthase subunit alpha
2118	 65.73	0	2435579..2436430	-	283	78062971	-	Bcep18194_B2124	-	DNA methylase N-4/N-6
2119	 65.75	0	2436440..2437633	-	397	78062972	-	Bcep18194_B2125	-	tryptophan synthase subunit beta
2120	 68.66	0	2437688..2438389	-	233	78062973	-	Bcep18194_B2126	-	N-(5'-phosphoribosyl)anthranilate isomerase
2121	 67.77	0	2438386..2439198	-	270	78062974	truA	Bcep18194_B2127	-	tRNA pseudouridine synthase A
2122	 70.86	+1	2439198..2441606	-	802	78062975	-	Bcep18194_B2128	-	hypothetical protein
2123	 63.86	0	2442253..2443497	+	414	78062976	flgE	Bcep18194_B2129	-	flagellar hook protein FlgE
2124	 64.88	0	2443602..2444723	-	373	78062977	-	Bcep18194_B2130	-	aspartate-semialdehyde dehydrogenase
2125	 66.10	0	2445023..2446090	-	355	78062978	-	Bcep18194_B2131	-	3-isopropylmalate dehydrogenase
2126	 62.67	-1	2446170..2446820	-	216	78062979	leuD	Bcep18194_B2132	-	isopropylmalate isomerase small subunit
2127	 65.32	0	2447038..2448447	-	469	78062980	-	Bcep18194_B2133	-	isopropylmalate isomerase large subunit
2128	 67.71	0	2448669..2449433	-	254	78062981	-	Bcep18194_B2134	-	hypothetical protein
2129	 68.00	0	2449460..2450281	-	273	78062982	-	Bcep18194_B2135	-	hypothetical protein
2130	 65.12	0	2450683..2451006	+	107	78062983	-	Bcep18194_B2136	-	hypothetical protein
2131	 64.05	0	2451135..2451860	+	241	78062984	-	Bcep18194_B2137	-	glutathione S-transferase-like protein
2132	 66.67	0	2451911..2452309	-	132	78062985	-	Bcep18194_B2138	-	hypothetical protein
2133	 70.85	+1	2452325..2453710	-	461	78062986	-	Bcep18194_B2139	-	major facilitator transporter
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.