IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
156	 66.67	0	170359..170802	-	147	78061009	-	Bcep18194_B0156	-	phenylacetic acid degradation-related protein
157	 70.86	+1	171073..172692	+	539	78061010	-	Bcep18194_B0157	-	methyl-accepting chemotaxis sensory transducer
158	 71.89	+1	172665..173774	-	369	78061011	-	Bcep18194_B0158	-	N-acylglucosamine 2-epimerase
159	 69.68	0	174615..176105	+	496	78061012	-	Bcep18194_B0159	-	hypothetical protein
160	 67.08	0	176594..177073	+	159	78061013	-	Bcep18194_B0161	-	GCN5-related N-acetyltransferase
161	 71.69	+1	177235..180357	-	1040	78061014	-	Bcep18194_B0162	-	copper-translocating P-type ATPase
162	 67.59	0	180545..180868	-	107	78061015	-	Bcep18194_B0163	-	HicB family protein
163	 58.62	-2	180882..181142	-	86	78061016	-	Bcep18194_B0164	-	hypothetical protein
164	 71.33	+1	181455..182891	+	478	78061017	-	Bcep18194_B0165	-	hypothetical protein
165	 67.46	0	183040..186834	+	1264	78061018	-	Bcep18194_B0166	-	hypothetical protein
166	 65.78	0	186894..187118	-	74	78061019	-	Bcep18194_B0167	-	hypothetical protein
167	 66.61	0	187436..189109	+	557	78061020	-	Bcep18194_B0168	-	Type I phosphodiesterase/nucleotide pyrophosphatase
168	 68.74	0	189194..190447	-	417	78061021	-	Bcep18194_B0169	-	hypothetical protein
169	 64.10	0	190494..190688	+	64	78061022	-	Bcep18194_B0170	-	hypothetical protein
170	 67.58	0	190728..191708	-	326	78061023	-	Bcep18194_B0171	-	LysR family transcriptional regulator
171	 68.54	0	191733..192425	+	230	78061024	-	Bcep18194_B0172	-	hypothetical protein
172	 61.67	-1	192604..192783	-	59	78061025	-	Bcep18194_B0173	-	hypothetical protein
173	 65.58	0	192755..193762	-	335	78061026	-	Bcep18194_B0174	-	cytochrome bd ubiquinol oxidase, subunit II
174	 65.61	0	193792..195204	-	470	78061027	-	Bcep18194_B0175	-	cytochrome bd ubiquinol oxidase, subunit I
175	 69.11	0	195707..196033	+	108	78061028	-	Bcep18194_B0176	-	hypothetical protein
176	 74.77	+2	196047..196601	+	184	78061029	-	Bcep18194_B0177	-	hypothetical protein
177	 67.95	0	196742..197755	+	337	78061030	-	Bcep18194_B0178	-	L-threonine aldolase
178	 63.38	0	197870..198082	-	70	78061031	-	Bcep18194_B0179	-	hypothetical protein
179	 71.19	+1	198340..199245	-	301	78061032	-	Bcep18194_B0180	-	chromosome replication initiation inhibitor protein
180	 62.08	-1	199553..200206	+	217	78061033	-	Bcep18194_B0181	-	peroxidase
181	 70.40	0	200346..201416	+	356	78061034	-	Bcep18194_B0182	-	Beta-lactamase-like
182	 66.67	0	201546..202205	+	219	78061035	-	Bcep18194_B0183	-	glutathione S-transferase-like protein
183	 65.51	0	202309..203001	-	230	78061036	-	Bcep18194_B0184	-	phosphoesterase, PA-phosphatase related
184	 74.13	+1	203432..204664	-	410	78061037	-	Bcep18194_B0185	-	major facilitator transporter
185	 69.21	0	204766..205749	+	327	78061038	-	Bcep18194_B0186	-	LysR family transcriptional regulator
186	 67.76	0	205803..206441	-	212	78061039	-	Bcep18194_B0187	-	DSBA oxidoreductase
187	 70.44	0	206550..207026	-	158	78061040	-	Bcep18194_B0188	-	hypothetical protein
188	 67.28	0	207151..207636	-	161	78061041	-	Bcep18194_B0189	-	hypothetical protein
189	 66.94	0	207608..207973	-	121	78061042	-	Bcep18194_B0190	-	ArsR family transcriptional regulator
190	 70.81	+1	208178..208708	+	176	78061043	-	Bcep18194_B0191	-	GCN5-related N-acetyltransferase
191	 67.68	0	208720..209505	+	261	78061044	-	Bcep18194_B0192	-	membrane protein
192	 71.24	+1	209521..210438	-	305	78061045	-	Bcep18194_B0193	-	hypothetical protein
193	 69.43	0	210730..211308	+	192	78061046	-	Bcep18194_B0194	-	hypothetical protein
194	 70.60	+1	211393..211977	-	194	78061047	-	Bcep18194_B0195	-	TetR family transcriptional regulator
195	 69.50	0	212323..213027	+	234	78061048	-	Bcep18194_B0196	-	short chain dehydrogenase
196	 64.34	0	213092..214294	-	400	78061049	-	Bcep18194_B0197	-	trans-2-enoyl-CoA reductase
197	 64.42	0	214455..214988	+	177	78061050	-	Bcep18194_B0198	-	transcriptional regulators-like
198	 70.41	0	215089..216396	+	435	78061051	-	Bcep18194_B0199	-	NAD-dependent epimerase/dehydratase
199	 66.45	0	216393..216863	+	156	78061052	-	Bcep18194_B0200	-	integral membrane protein-like
200	 69.90	0	216964..217830	+	288	78061053	-	Bcep18194_B0201	-	putative thiol-disulphide oxidoreductase DCC
201	 68.20	0	217827..219326	+	499	78061054	-	Bcep18194_B0202	-	hypothetical protein
202	 64.58	0	219399..220022	+	207	78061055	-	Bcep18194_B0203	-	glutathione S-transferase-like protein
203	 71.59	+1	220130..221530	-	466	78061056	-	Bcep18194_B0204	-	Beta-lactamase
204	 67.77	0	221723..222901	-	392	78061057	-	Bcep18194_B0205	-	hypothetical protein
205	 67.82	0	223185..223616	+	143	78061058	-	Bcep18194_B0206	-	histidine triad (HIT) protein
206	 66.06	0	223872..224036	+	54	78061059	-	Bcep18194_B0207	-	hypothetical protein
207	 66.97	0	224199..224858	+	219	78061060	-	Bcep18194_B0208	-	isoprenylcysteine carboxyl methyltransferase
208	 74.72	+2	225237..225683	+	148	78061061	-	Bcep18194_B0209	-	hypothetical protein
209	 63.61	0	225817..226110	-	97	78061062	-	Bcep18194_B0210	-	hypothetical protein
210	 62.37	-1	226551..227387	+	278	78061063	-	Bcep18194_B0211	-	hypothetical protein
211	 59.32	-2	227540..228682	-	380	78061064	-	Bcep18194_B0212	-	hypothetical protein
212	 66.92	0	228766..229560	-	264	78061065	-	Bcep18194_B0213	-	aminoglycoside/hydroxyurea antibiotic resistance kinase
213	 70.53	0	229799..231922	+	707	78061066	-	Bcep18194_B0214	-	penicillin-binding protein 1A
214	 67.16	0	231931..232542	+	203	78061067	-	Bcep18194_B0215	-	hypothetical protein
215	 62.53	-1	232631..233017	-	128	78061068	-	Bcep18194_B0216	-	hypothetical protein
216	 69.83	0	233137..233958	-	273	78061069	-	Bcep18194_B0217	-	hemin importer ATP-binding subunit
217	 74.84	+2	233978..235066	-	362	78061070	-	Bcep18194_B0218	-	ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit
218	 74.62	+2	235082..235999	-	305	78061071	-	Bcep18194_B0219	-	ABC cobalamin/Fe3+-siderophore transporter, periplasmic ligand binding protein
219	 69.14	0	235996..237087	-	363	78061072	-	Bcep18194_B0220	-	heme degradation protein
220	 67.72	0	237137..239404	-	755	78061073	-	Bcep18194_B0221	-	TonB-dependent haemoglobin/transferrin/lactoferrin receptor
221	 65.79	0	239643..239870	-	75	78061074	-	Bcep18194_B0222	-	hypothetical protein
222	 65.52	0	240072..240506	-	144	78061075	-	Bcep18194_B0223	-	hypothetical protein
223	 62.84	-1	240580..240840	-	86	78061076	-	Bcep18194_B0224	-	hypothetical protein
224	 63.98	0	241048..242199	-	383	78061077	-	Bcep18194_B0225	-	outer membrane protein (porin)
225	 65.06	0	242508..243314	+	268	78061078	-	Bcep18194_B0226	-	YaeC family lipoprotein
226	 67.74	0	243448..244563	-	371	78061079	-	Bcep18194_B0227	-	succinylglutamate desuccinylase/aspartoacylase
227	 62.96	-1	244788..245570	-	260	78061080	-	Bcep18194_B0228	-	lysine/arginine/ornithine  ABC transporter periplasmic ligand-binding protein
228	 69.06	0	245797..246717	-	306	78061081	-	Bcep18194_B0229	-	LysR family transcriptional regulator
229	 70.68	+1	246866..247813	-	315	78061082	-	Bcep18194_B0230	-	transcriptional regulator
230	 66.67	0	247920..248228	+	102	78061083	-	Bcep18194_B0231	-	hypothetical protein
231	 69.65	0	248225..248626	+	133	78061084	-	Bcep18194_B0232	-	hypothetical protein
232	 68.69	0	248671..249264	-	197	78061085	-	Bcep18194_B0233	-	hypothetical protein
233	 67.46	0	249478..250866	-	462	78061086	-	Bcep18194_B0234	-	xanthine/uracil/vitamin C transporter
234	 66.96	0	251396..252073	-	225	78061087	-	Bcep18194_B0235	-	TetR family transcriptional regulator
235	 67.57	0	252122..252787	+	221	78061088	-	Bcep18194_B0236	-	O-methyltransferase family protein
236	 70.95	+1	252906..253442	-	178	78061089	-	Bcep18194_B0237	-	hypothetical protein
237	 70.05	0	253620..254624	-	334	78061090	-	Bcep18194_B0238	-	aldo/keto reductase
238	 70.34	0	254647..255762	-	371	78061091	-	Bcep18194_B0239	-	NADH-flavin oxidoreductase/NADH oxidase
239	 66.54	0	255832..256638	-	268	78061092	dkgB	Bcep18194_B0240	-	2,5-diketo-D-gluconate reductase B
240	 68.26	0	256796..257737	+	313	78061093	-	Bcep18194_B0241	-	LysR family transcriptional regulator
241	 66.87	0	257825..259300	-	491	78061094	-	Bcep18194_B0242	-	glucose-6-phosphate 1-dehydrogenase
242	 70.29	0	259503..260081	+	192	78061095	-	Bcep18194_B0243	-	TetR family transcriptional regulator
243	 70.32	0	260256..261131	+	291	78061096	-	Bcep18194_B0244	-	Short-chain dehydrogenase/reductase SDR
244	 67.31	0	261260..261880	-	206	78061097	-	Bcep18194_B0245	-	(Acyl-carrier protein) phosphodiesterase
245	 66.25	0	261944..262426	+	160	78061098	-	Bcep18194_B0246	-	putative transcriptional regulator
246	 69.37	0	262455..263231	-	258	78061099	-	Bcep18194_B0247	-	hypothetical protein
247	 66.45	0	263483..264391	+	302	78061100	-	Bcep18194_B0248	-	LysR family transcriptional regulator
248	 62.87	-1	264527..265105	-	192	78061101	-	Bcep18194_B0249	-	alkylhydroperoxidase AhpD core
249	 69.92	0	265191..266174	-	327	78061102	-	Bcep18194_B0250	-	zinc-containing alcohol dehydrogenase superfamily protein
250	 67.14	0	266228..266866	-	212	78061103	-	Bcep18194_B0251	-	TetR family transcriptional regulator
251	 68.01	0	267086..268276	+	396	78061104	-	Bcep18194_B0252	-	peptidase M20D, amidohydrolase
252	 68.62	0	268335..269666	+	443	78061105	-	Bcep18194_B0253	-	major facilitator transporter
253	 69.60	0	269713..270633	-	306	78061106	-	Bcep18194_B0254	-	LysR family transcriptional regulator
254	 66.02	0	270770..271543	+	257	78061107	-	Bcep18194_B0255	-	extracellular solute-binding protein
255	 68.46	0	271603..272718	+	371	78061108	-	Bcep18194_B0256	-	succinylglutamate desuccinylase/aspartoacylase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.