IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1982	 68.83	0	2271969..2273033	-	354	78062835	-	Bcep18194_B1986	-	L-asparaginase II
1983	 65.45	0	2273289..2275598	+	769	78062836	-	Bcep18194_B1987	-	TonB-dependent siderophore receptor
1984	 64.95	0	2275644..2277098	-	484	78062837	-	Bcep18194_B1988	-	aldehyde dehydrogenase
1985	 69.25	0	2277143..2277490	-	115	78062838	-	Bcep18194_B1989	-	hypothetical protein
1986	 68.37	0	2277762..2279288	+	508	78062839	-	Bcep18194_B1990	-	GntR family transcriptional regulator
1987	 67.08	0	2279771..2282656	+	961	78062840	-	Bcep18194_B1991	-	Alpha-1,2-mannosidase, putative
1988	 68.67	0	2283031..2283429	+	132	78062841	-	Bcep18194_B1992	-	hypothetical protein
1989	 66.34	0	2283590..2285407	+	605	78062842	-	Bcep18194_B1993	-	sulfoacetaldehyde acetyltransferase
1990	 70.92	+1	2285536..2286570	+	344	78062843	-	Bcep18194_B1994	-	phosphotransacetylase
1991	 69.53	0	2286567..2287334	+	255	78062844	-	Bcep18194_B1995	-	hypothetical protein
1992	 70.21	0	2287220..2289052	-	610	78062845	-	Bcep18194_B1996	-	cobalamin biosynthesis protein CobT
1993	 66.87	0	2289049..2290038	-	329	78062846	-	Bcep18194_B1997	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
1994	 70.65	+1	2290225..2290977	+	250	78062847	-	Bcep18194_B1998	-	IclR family transcriptional regulator
1995	 70.02	0	2291010..2291963	-	317	78062848	-	Bcep18194_B1999	-	DMSO reductase anchor subunit (DmsC)
1996	 68.01	0	2292003..2292749	-	248	78062849	-	Bcep18194_B2000	-	4Fe-4S ferredoxin
1997	 67.48	0	2292766..2295702	-	978	78062850	-	Bcep18194_B2001	-	molybdopterin oxidoreductase
1998	 66.10	0	2295944..2297365	-	473	78062851	-	Bcep18194_B2002	-	amino acid transporter
1999	 68.08	0	2297546..2298961	-	471	78062852	-	Bcep18194_B2003	-	FAD dependent oxidoreductase
2000	 68.89	0	2299535..2300839	-	434	78062853	-	Bcep18194_B2004	-	major facilitator transporter
2001	 68.54	0	2300967..2302622	-	551	78062854	-	Bcep18194_B2005	-	glucose-methanol-choline oxidoreductase
2002	 71.52	+1	2302810..2303634	+	274	78062855	-	Bcep18194_B2006	-	IclR family transcriptional regulator
2003	 63.27	-1	2303770..2304093	-	107	78062856	-	Bcep18194_B2007	-	hypothetical protein
2004	 65.87	0	2304311..2304934	-	207	78062857	-	Bcep18194_B2008	-	(Acyl-carrier protein) phosphodiesterase
2005	 66.11	0	2305029..2305385	+	118	78062858	-	Bcep18194_B2009	-	ArsR family transcriptional regulator
2006	 65.80	0	2305382..2305840	+	152	78062859	-	Bcep18194_B2010	-	hypothetical protein
2007	 68.45	0	2305868..2306932	-	354	78062860	-	Bcep18194_B2011	-	hypothetical protein
2008	 66.56	0	2306910..2307860	-	316	78062861	-	Bcep18194_B2012	-	hypothetical protein
2009	 67.83	0	2307857..2308546	-	229	78062862	-	Bcep18194_B2013	-	hypothetical protein
2010	 64.44	0	2308895..2309119	+	74	78062863	-	Bcep18194_B2014	-	hypothetical protein
2011	 66.46	0	2309166..2309651	-	161	78062864	-	Bcep18194_B2015	-	hypothetical protein
2012	 66.39	0	2309738..2310103	-	121	78062865	-	Bcep18194_B2016	-	hypothetical protein
2013	 72.34	+1	2310358..2311362	+	334	78062866	-	Bcep18194_B2017	-	chemotaxis-specific methylesterase
2014	 68.54	0	2311430..2312497	+	355	78062867	-	Bcep18194_B2018	-	response regulator receiver modulated diguanylate cyclase
2015	 68.40	0	2312518..2314767	-	749	78062868	-	Bcep18194_B2019	-	diguanylate cyclase/phosphodiesterase with GAF sensor
2016	 73.55	+1	2315105..2316136	-	343	78062869	-	Bcep18194_B2020	-	LysR family transcriptional regulator
2017	 68.72	0	2316211..2318109	+	632	78062870	-	Bcep18194_B2021	-	sulfatase
2018	 66.24	0	2318342..2319277	+	311	78062871	-	Bcep18194_B2022	-	AraC family transcriptional regulator
2019	 65.90	0	2319240..2320550	-	436	78062872	-	Bcep18194_B2023	-	hypothetical protein
2020	 69.12	0	2320547..2322052	-	501	78062873	-	Bcep18194_B2024	-	hypothetical protein
2021	 65.75	0	2322189..2323823	-	544	78062874	-	Bcep18194_B2025	-	hypothetical protein
2022	 64.97	0	2323897..2324367	-	156	78062875	-	Bcep18194_B2026	-	hypothetical protein
2023	 67.91	0	2324701..2325423	+	240	78062876	-	Bcep18194_B2027	-	haloacid dehalogenase, type II
2024	 66.34	0	2325563..2326489	+	308	78062877	-	Bcep18194_B2028	-	hypothetical protein
2025	 70.19	0	2326486..2326911	-	141	78062878	-	Bcep18194_B2029	-	hypothetical protein
2026	 67.41	0	2327043..2327849	-	268	78062879	-	Bcep18194_B2030	-	hypothetical protein
2027	 69.48	0	2327965..2328924	-	319	78062880	-	Bcep18194_B2031	-	LysR family transcriptional regulator
2028	 68.94	0	2329082..2330401	+	439	78062881	-	Bcep18194_B2032	-	major facilitator transporter
2029	 67.39	0	2330514..2332040	+	508	78062882	-	Bcep18194_B2033	-	methylmalonate-semialdehyde dehydrogenase [acylating]
2030	 71.83	+1	2332057..2332947	+	296	78062883	-	Bcep18194_B2034	-	3-hydroxyisobutyrate dehydrogenase
2031	 64.56	0	2333068..2333400	-	110	78062884	-	Bcep18194_B2035	-	hypothetical protein
2032	 65.88	0	2333906..2334670	+	254	78062885	-	Bcep18194_B2036	-	hypothetical protein
2033	 70.62	+1	2334739..2335269	-	176	78062886	-	Bcep18194_B2037	-	hypothetical protein
2034	 70.81	+1	2335303..2335809	-	168	78062887	-	Bcep18194_B2038	-	hypothetical protein
2035	 66.54	0	2335950..2337500	+	516	78062888	-	Bcep18194_B2039	-	cytosine/purines, uracil, thiamine, allantoin transporter
2036	 69.82	0	2337523..2338251	+	242	78062889	-	Bcep18194_B2040	-	Asp/Glu racemase
2037	 70.49	0	2338313..2339488	+	391	78062890	-	Bcep18194_B2041	-	LysR family transcriptional regulator
2038	 69.64	0	2339624..2340565	-	313	78062891	-	Bcep18194_B2042	-	auxin efflux carrier
2039	 74.05	+1	2340653..2342224	-	523	78062892	-	Bcep18194_B2043	-	major facilitator transporter
2040	 73.83	+1	2342325..2343203	+	292	78062893	-	Bcep18194_B2044	-	LysR family transcriptional regulator
2041	 73.05	+1	2343372..2344358	+	328	78062894	-	Bcep18194_B2045	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2042	 73.87	+1	2344381..2344755	-	124	78062895	-	Bcep18194_B2046	-	hypothetical protein
2043	 68.06	0	2345103..2346182	+	359	78062896	-	Bcep18194_B2047	-	glycosyl transferase family protein
2044	 71.29	+1	2346198..2347451	+	417	78062897	-	Bcep18194_B2048	-	hypothetical protein
2045	 67.92	0	2347424..2348464	-	346	78062898	-	Bcep18194_B2049	-	hypothetical protein
2046	 68.76	0	2348457..2348885	-	142	78062899	-	Bcep18194_B2050	-	TadE-like protein
2047	 73.49	+1	2348882..2349760	-	292	78062900	-	Bcep18194_B2051	-	TPR repeat-containing protein
2048	 70.16	0	2349757..2350701	-	314	78062901	-	Bcep18194_B2052	-	type II secretion system protein
2049	 69.94	0	2350698..2351675	-	325	78062902	-	Bcep18194_B2053	-	type II secretion system protein
2050	 69.26	0	2351672..2353096	-	474	78062903	-	Bcep18194_B2054	-	type II secretion system protein E
2051	 67.71	0	2353093..2354340	-	415	78062904	-	Bcep18194_B2055	-	response regulator receiver domain-containing protein
2052	 71.39	+1	2354337..2354717	-	126	78062905	-	Bcep18194_B2056	-	hypothetical protein
2053	 68.55	0	2354733..2356115	-	460	78062906	-	Bcep18194_B2057	-	type II and III secretion system protein
2054	 74.73	+2	2356170..2357198	-	342	78062907	-	Bcep18194_B2058	-	Flp pilus assembly CpaB
2055	 74.05	+1	2357219..2357692	-	157	78062908	-	Bcep18194_B2059	-	peptidase A24A, prepilin type IV
2056	 62.77	-1	2357781..2358062	-	93	78062909	-	Bcep18194_B2060	-	Flp/Fap pilin component
2057	 66.01	0	2358821..2359888	+	355	78062910	-	Bcep18194_B2061	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2058	 70.46	0	2359904..2360746	+	280	78062911	-	Bcep18194_B2062	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2059	 71.05	+1	2360786..2361607	+	273	78062912	-	Bcep18194_B2063	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
2060	 70.69	+1	2361646..2362491	+	281	78062913	-	Bcep18194_B2064	-	nitrate/sulfonate/bicarbonate ABC transporter ATPase
2061	 69.18	0	2362640..2363593	+	317	78062914	-	Bcep18194_B2065	-	taurine dioxygenase
2062	 68.57	0	2363752..2364699	+	315	78062915	-	Bcep18194_B2066	-	taurine dioxygenase
2063	 66.61	0	2364799..2366460	-	553	78062916	-	Bcep18194_B2067	-	ABC peptide transporter, periplasmic ligand binding protein
2064	 69.61	0	2366752..2367159	+	135	78062917	-	Bcep18194_B2068	-	hypothetical protein
2065	 68.38	0	2367536..2368528	+	330	78062918	-	Bcep18194_B2069	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
2066	 68.72	0	2368568..2369152	-	194	78062919	-	Bcep18194_B2070	-	hypothetical protein
2067	 69.20	0	2369327..2370235	+	302	78062920	-	Bcep18194_B2071	-	LysR family transcriptional regulator
2068	 67.14	0	2371689..2373989	-	766	78062921	-	Bcep18194_B2074	-	response regulator receiver domain-containing protein
2069	 65.20	0	2374499..2376679	+	726	78062922	-	Bcep18194_B2075	-	ornithine decarboxylase
2070	 71.07	+1	2376896..2378077	+	393	78062923	-	Bcep18194_B2076	-	major facilitator transporter
2071	 70.12	0	2378115..2379272	-	385	78062924	-	Bcep18194_B2077	-	Iron-containing alcohol dehydrogenase
2072	 63.10	-1	2379269..2379604	-	111	78062925	-	Bcep18194_B2078	-	antibiotic biosynthesis monooxygenase
2073	 67.53	0	2379633..2380208	-	191	78062926	-	Bcep18194_B2079	-	glycerol-3-phosphate responsive antiterminator (mRNA-binding)-like
2074	 69.74	0	2380214..2381776	-	520	78062927	-	Bcep18194_B2080	-	FAD linked oxidase-like
2075	 68.51	0	2381773..2383452	-	559	78062928	-	Bcep18194_B2081	-	FAD dependent oxidoreductase
2076	 70.82	+1	2383471..2385012	-	513	78062929	-	Bcep18194_B2082	-	glycerol kinase
2077	 66.08	0	2385009..2386532	-	507	78062930	-	Bcep18194_B2083	-	major facilitator transporter
2078	 66.95	0	2386723..2387439	-	238	78062931	-	Bcep18194_B2084	-	Short-chain dehydrogenase/reductase SDR
2079	 71.57	+1	2387573..2388550	+	325	78062932	-	Bcep18194_B2085	-	LysR family transcriptional regulator
2080	 69.92	0	2388559..2389296	-	245	78062933	-	Bcep18194_B2086	-	Short-chain dehydrogenase/reductase SDR
2081	 68.13	0	2389400..2390356	+	318	78062934	-	Bcep18194_B2087	-	LysR family transcriptional regulator
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.