IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1943	 68.96	0	2230536..2231015	+	159	78062796	-	Bcep18194_B1947	-	GCN5-related N-acetyltransferase
1944	 69.67	0	2231108..2232373	-	421	78062797	-	Bcep18194_B1948	-	allantoate amidohydrolase
1945	 68.38	0	2232366..2232890	-	174	78062798	-	Bcep18194_B1949	-	hypothetical protein
1946	 68.64	0	2232935..2234101	-	388	78062799	-	Bcep18194_B1950	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
1947	 68.56	0	2234279..2235175	+	298	78062800	-	Bcep18194_B1951	-	LysR family transcriptional regulator
1948	 62.57	-1	2235148..2235513	+	121	78062801	-	Bcep18194_B1952	-	helix-turn-helix protein, CopG
1949	 61.52	-1	2235801..2236364	+	187	78062802	-	Bcep18194_B1953	-	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1950	 65.92	0	2236490..2238088	+	532	78062803	-	Bcep18194_B1954	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1951	 70.64	+1	2238184..2238963	-	259	78062804	-	Bcep18194_B1955	-	hypothetical protein
1952	 67.93	0	2239124..2239678	-	184	78062805	-	Bcep18194_B1956	-	hypothetical protein
1953	 67.19	0	2239711..2241045	-	444	78062806	-	Bcep18194_B1957	-	hypothetical protein
1954	 70.57	+1	2241061..2242110	-	349	78062807	-	Bcep18194_B1958	-	peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase
1955	 63.65	0	2242131..2242859	-	242	78062808	glnQ	Bcep18194_B1959	-	glutamine ABC transporter ATP-binding protein
1956	 62.10	-1	2242856..2243512	-	218	78062809	glnP	Bcep18194_B1960	-	glutamine ABC transporter permease protein
1957	 63.88	0	2243579..2244331	-	250	78062810	glnH	Bcep18194_B1961	-	glutamine ABC transporter periplasmic protein
1958	 71.30	+1	2244946..2248551	-	1201	78062811	-	Bcep18194_B1962	-	ABC efflux pump, fused ATPase and inner membrane subunits
1959	 69.89	0	2248605..2249567	+	320	78062812	-	Bcep18194_B1963	-	LysR family transcriptional regulator
1960	 65.86	0	2249595..2249966	-	123	78062813	-	Bcep18194_B1964	-	membrane protein-like
1961	 70.23	0	2250268..2251389	+	373	78062814	alr	Bcep18194_B1965	-	alanine racemase
1962	 67.92	0	2251558..2252352	-	264	78062815	-	Bcep18194_B1966	-	enoyl-CoA hydratase
1963	 67.55	0	2252497..2252949	-	150	78062816	-	Bcep18194_B1967	-	hypothetical protein
1964	 66.50	0	2252960..2253547	-	195	78062817	-	Bcep18194_B1968	-	hypothetical protein
1965	 61.05	-1	2253727..2254617	-	296	78062818	-	Bcep18194_B1969	-	LysR family transcriptional regulator
1966	 64.07	0	2254728..2255342	+	204	78062819	-	Bcep18194_B1970	-	nitroreductase
1967	 66.26	0	2255428..2256414	+	328	78062820	-	Bcep18194_B1971	-	zinc-containing alcohol dehydrogenase superfamily protein
1968	 56.83	-2	2256492..2256989	+	165	78062821	-	Bcep18194_B1972	-	hypothetical protein
1969	 69.58	0	2257140..2258066	-	308	78062822	-	Bcep18194_B1973	-	LysR family transcriptional regulator
1970	 71.94	+1	2258139..2258669	+	176	78062823	-	Bcep18194_B1974	-	hypothetical protein
1971	 64.48	0	2258716..2259081	-	121	78062824	-	Bcep18194_B1975	-	response regulator receiver protein
1972	 65.83	0	2259122..2260081	-	319	78062825	-	Bcep18194_B1976	-	hypothetical protein
1973	 69.07	0	2260124..2260705	-	193	78062826	-	Bcep18194_B1977	-	hypothetical protein
1974	 71.24	+1	2260702..2261445	-	247	78062827	-	Bcep18194_B1978	-	methyl-accepting chemotaxis sensory transducer
1975	 66.83	0	2261453..2263834	-	793	78062828	-	Bcep18194_B1979	-	putative CheA signal transduction histidine kinase
1976	 65.57	0	2264291..2266021	-	576	78062829	-	Bcep18194_B1980	-	Na+/solute symporter
1977	 58.25	-2	2266018..2266326	-	102	78062830	-	Bcep18194_B1981	-	hypothetical protein
1978	 70.47	0	2266983..2267666	+	227	78062831	-	Bcep18194_B1982	-	phospholipase/carboxylesterase
1979	 67.86	0	2267719..2269230	-	503	78062832	-	Bcep18194_B1983	-	amino acid transporter
1980	 67.24	0	2269338..2270744	-	468	78062833	aspA	Bcep18194_B1984	-	aspartate ammonia-lyase
1981	 65.96	0	2270862..2271854	+	330	78062834	-	Bcep18194_B1985	-	LysR family transcriptional regulator
1982	 68.83	0	2271969..2273033	-	354	78062835	-	Bcep18194_B1986	-	L-asparaginase II
1983	 65.45	0	2273289..2275598	+	769	78062836	-	Bcep18194_B1987	-	TonB-dependent siderophore receptor
1984	 64.95	0	2275644..2277098	-	484	78062837	-	Bcep18194_B1988	-	aldehyde dehydrogenase
1985	 69.25	0	2277143..2277490	-	115	78062838	-	Bcep18194_B1989	-	hypothetical protein
1986	 68.37	0	2277762..2279288	+	508	78062839	-	Bcep18194_B1990	-	GntR family transcriptional regulator
1987	 67.08	0	2279771..2282656	+	961	78062840	-	Bcep18194_B1991	-	Alpha-1,2-mannosidase, putative
1988	 68.67	0	2283031..2283429	+	132	78062841	-	Bcep18194_B1992	-	hypothetical protein
1989	 66.34	0	2283590..2285407	+	605	78062842	-	Bcep18194_B1993	-	sulfoacetaldehyde acetyltransferase
1990	 70.92	+1	2285536..2286570	+	344	78062843	-	Bcep18194_B1994	-	phosphotransacetylase
1991	 69.53	0	2286567..2287334	+	255	78062844	-	Bcep18194_B1995	-	hypothetical protein
1992	 70.21	0	2287220..2289052	-	610	78062845	-	Bcep18194_B1996	-	cobalamin biosynthesis protein CobT
1993	 66.87	0	2289049..2290038	-	329	78062846	-	Bcep18194_B1997	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
1994	 70.65	+1	2290225..2290977	+	250	78062847	-	Bcep18194_B1998	-	IclR family transcriptional regulator
1995	 70.02	0	2291010..2291963	-	317	78062848	-	Bcep18194_B1999	-	DMSO reductase anchor subunit (DmsC)
1996	 68.01	0	2292003..2292749	-	248	78062849	-	Bcep18194_B2000	-	4Fe-4S ferredoxin
1997	 67.48	0	2292766..2295702	-	978	78062850	-	Bcep18194_B2001	-	molybdopterin oxidoreductase
1998	 66.10	0	2295944..2297365	-	473	78062851	-	Bcep18194_B2002	-	amino acid transporter
1999	 68.08	0	2297546..2298961	-	471	78062852	-	Bcep18194_B2003	-	FAD dependent oxidoreductase
2000	 68.89	0	2299535..2300839	-	434	78062853	-	Bcep18194_B2004	-	major facilitator transporter
2001	 68.54	0	2300967..2302622	-	551	78062854	-	Bcep18194_B2005	-	glucose-methanol-choline oxidoreductase
2002	 71.52	+1	2302810..2303634	+	274	78062855	-	Bcep18194_B2006	-	IclR family transcriptional regulator
2003	 63.27	-1	2303770..2304093	-	107	78062856	-	Bcep18194_B2007	-	hypothetical protein
2004	 65.87	0	2304311..2304934	-	207	78062857	-	Bcep18194_B2008	-	(Acyl-carrier protein) phosphodiesterase
2005	 66.11	0	2305029..2305385	+	118	78062858	-	Bcep18194_B2009	-	ArsR family transcriptional regulator
2006	 65.80	0	2305382..2305840	+	152	78062859	-	Bcep18194_B2010	-	hypothetical protein
2007	 68.45	0	2305868..2306932	-	354	78062860	-	Bcep18194_B2011	-	hypothetical protein
2008	 66.56	0	2306910..2307860	-	316	78062861	-	Bcep18194_B2012	-	hypothetical protein
2009	 67.83	0	2307857..2308546	-	229	78062862	-	Bcep18194_B2013	-	hypothetical protein
2010	 64.44	0	2308895..2309119	+	74	78062863	-	Bcep18194_B2014	-	hypothetical protein
2011	 66.46	0	2309166..2309651	-	161	78062864	-	Bcep18194_B2015	-	hypothetical protein
2012	 66.39	0	2309738..2310103	-	121	78062865	-	Bcep18194_B2016	-	hypothetical protein
2013	 72.34	+1	2310358..2311362	+	334	78062866	-	Bcep18194_B2017	-	chemotaxis-specific methylesterase
2014	 68.54	0	2311430..2312497	+	355	78062867	-	Bcep18194_B2018	-	response regulator receiver modulated diguanylate cyclase
2015	 68.40	0	2312518..2314767	-	749	78062868	-	Bcep18194_B2019	-	diguanylate cyclase/phosphodiesterase with GAF sensor
2016	 73.55	+1	2315105..2316136	-	343	78062869	-	Bcep18194_B2020	-	LysR family transcriptional regulator
2017	 68.72	0	2316211..2318109	+	632	78062870	-	Bcep18194_B2021	-	sulfatase
2018	 66.24	0	2318342..2319277	+	311	78062871	-	Bcep18194_B2022	-	AraC family transcriptional regulator
2019	 65.90	0	2319240..2320550	-	436	78062872	-	Bcep18194_B2023	-	hypothetical protein
2020	 69.12	0	2320547..2322052	-	501	78062873	-	Bcep18194_B2024	-	hypothetical protein
2021	 65.75	0	2322189..2323823	-	544	78062874	-	Bcep18194_B2025	-	hypothetical protein
2022	 64.97	0	2323897..2324367	-	156	78062875	-	Bcep18194_B2026	-	hypothetical protein
2023	 67.91	0	2324701..2325423	+	240	78062876	-	Bcep18194_B2027	-	haloacid dehalogenase, type II
2024	 66.34	0	2325563..2326489	+	308	78062877	-	Bcep18194_B2028	-	hypothetical protein
2025	 70.19	0	2326486..2326911	-	141	78062878	-	Bcep18194_B2029	-	hypothetical protein
2026	 67.41	0	2327043..2327849	-	268	78062879	-	Bcep18194_B2030	-	hypothetical protein
2027	 69.48	0	2327965..2328924	-	319	78062880	-	Bcep18194_B2031	-	LysR family transcriptional regulator
2028	 68.94	0	2329082..2330401	+	439	78062881	-	Bcep18194_B2032	-	major facilitator transporter
2029	 67.39	0	2330514..2332040	+	508	78062882	-	Bcep18194_B2033	-	methylmalonate-semialdehyde dehydrogenase [acylating]
2030	 71.83	+1	2332057..2332947	+	296	78062883	-	Bcep18194_B2034	-	3-hydroxyisobutyrate dehydrogenase
2031	 64.56	0	2333068..2333400	-	110	78062884	-	Bcep18194_B2035	-	hypothetical protein
2032	 65.88	0	2333906..2334670	+	254	78062885	-	Bcep18194_B2036	-	hypothetical protein
2033	 70.62	+1	2334739..2335269	-	176	78062886	-	Bcep18194_B2037	-	hypothetical protein
2034	 70.81	+1	2335303..2335809	-	168	78062887	-	Bcep18194_B2038	-	hypothetical protein
2035	 66.54	0	2335950..2337500	+	516	78062888	-	Bcep18194_B2039	-	cytosine/purines, uracil, thiamine, allantoin transporter
2036	 69.82	0	2337523..2338251	+	242	78062889	-	Bcep18194_B2040	-	Asp/Glu racemase
2037	 70.49	0	2338313..2339488	+	391	78062890	-	Bcep18194_B2041	-	LysR family transcriptional regulator
2038	 69.64	0	2339624..2340565	-	313	78062891	-	Bcep18194_B2042	-	auxin efflux carrier
2039	 74.05	+1	2340653..2342224	-	523	78062892	-	Bcep18194_B2043	-	major facilitator transporter
2040	 73.83	+1	2342325..2343203	+	292	78062893	-	Bcep18194_B2044	-	LysR family transcriptional regulator
2041	 73.05	+1	2343372..2344358	+	328	78062894	-	Bcep18194_B2045	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
2042	 73.87	+1	2344381..2344755	-	124	78062895	-	Bcep18194_B2046	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.