IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1861	 70.45	0	2133099..2134181	-	360	78062714	-	Bcep18194_B1864	-	aminopeptidase DmpA
1862	 68.34	0	2134181..2135074	-	297	78062715	-	Bcep18194_B1865	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1863	 66.23	0	2135082..2136002	-	306	78062716	-	Bcep18194_B1866	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1864	 64.75	0	2136082..2137644	-	520	78062717	-	Bcep18194_B1867	-	dipeptide/oligopeptide/nickel ABC periplasmic ligand-binding protein
1865	 68.98	0	2137740..2139641	-	633	78062718	-	Bcep18194_B1868	-	dipeptide/oligopeptide/nickel ABC transporter ATPase
1866	 69.44	0	2139671..2140678	-	335	78062719	-	Bcep18194_B1869	-	peptidase T2, asparaginase 2
1867	 66.08	0	2140675..2141691	-	338	78062720	-	Bcep18194_B1870	-	RpiR family transcriptional regulator
1868	 68.00	0	2142092..2143363	+	423	78062721	-	Bcep18194_B1871	-	major facilitator transporter
1869	 68.11	0	2143391..2145811	+	806	78062722	-	Bcep18194_B1872	-	Alpha-glucosidase
1870	 66.58	0	2145915..2147102	+	395	78062723	-	Bcep18194_B1873	-	outer membrane protein (porin)
1871	 67.80	0	2147412..2149442	+	676	78062724	-	Bcep18194_B1874	-	BCCT transporter
1872	 73.08	+1	2149495..2149806	+	103	78062725	-	Bcep18194_B1875	-	hypothetical protein
1873	 69.96	0	2149906..2150754	-	282	78062726	-	Bcep18194_B1876	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
1874	 69.40	0	2150956..2152419	+	487	78062727	-	Bcep18194_B1877	-	metallophosphoesterase
1875	 71.39	+1	2152416..2153813	+	465	78062728	-	Bcep18194_B1878	-	di-haem cytochrome c peroxidase
1876	 69.20	0	2153911..2154186	+	91	78062729	-	Bcep18194_B1879	-	hypothetical protein
1877	 69.43	0	2154268..2155752	-	494	78062730	-	Bcep18194_B1880	-	GntR family transcriptional regulator
1878	 68.38	0	2155956..2156306	+	116	78062731	-	Bcep18194_B1881	-	hypothetical protein
1879	 68.09	0	2156460..2156882	-	140	78062732	-	Bcep18194_B1882	-	YeeE/YedE family membrane protein
1880	 71.49	+1	2156884..2157318	-	144	78062733	-	Bcep18194_B1883	-	YeeE/YedE family membrane protein
1881	 66.38	0	2157308..2157658	-	116	78062734	-	Bcep18194_B1884	-	ArsR family transcriptional regulator
1882	 71.00	+1	2157755..2159116	-	453	78062735	-	Bcep18194_B1885	-	major facilitator transporter
1883	 67.66	0	2159197..2160405	-	402	78062736	-	Bcep18194_B1886	-	salicylate hydroxylase
1884	 66.51	0	2160425..2161066	-	213	78062737	-	Bcep18194_B1887	-	maleylacetoacetate isomerase
1885	 64.95	0	2161092..2161790	-	232	78062738	-	Bcep18194_B1888	-	fumarylacetoacetate (FAA) hydrolase
1886	 68.77	0	2161881..2162924	-	347	78062739	-	Bcep18194_B1889	-	gentisate 1,2-dioxygenase
1887	 68.25	0	2163089..2164033	+	314	78062740	-	Bcep18194_B1890	-	LysR family transcriptional regulator
1888	 71.16	+1	2164245..2165513	-	422	78062741	-	Bcep18194_B1891	-	pyridine nucleotide-disulphide oxidoreductase
1889	 71.37	+1	2165510..2165743	-	77	78062742	-	Bcep18194_B1892	-	ferredoxin
1890	 71.28	+1	2165871..2166998	-	375	78062743	-	Bcep18194_B1893	-	FAD dependent oxidoreductase
1891	 68.98	0	2166995..2168074	-	359	78062744	-	Bcep18194_B1894	-	proline racemase
1892	 65.69	0	2168179..2169099	+	306	78062745	-	Bcep18194_B1895	-	dihydrodipicolinate synthetase
1893	 66.11	0	2169329..2170954	+	541	78062746	-	Bcep18194_B1896	-	amino acid transporter
1894	 71.15	+1	2171030..2172613	+	527	78062747	-	Bcep18194_B1897	-	2,5-dioxopentanoate dehydrogenase
1895	 68.62	0	2172615..2173637	+	340	78062748	-	Bcep18194_B1898	-	malate/L-lactate dehydrogenase
1896	 66.18	0	2173922..2175781	+	619	78062749	-	Bcep18194_B1899	-	dihydroxy-acid dehydratase
1897	 74.40	+2	2175919..2176746	-	275	78062750	-	Bcep18194_B1900	-	SH3 domain-containing protein
1898	 72.34	+1	2176780..2177220	-	146	78062751	-	Bcep18194_B1901	-	hypothetical protein
1899	 71.81	+1	2177519..2179054	+	511	78062752	-	Bcep18194_B1902	-	RNA polymerase, sigma 38 subunit, RpoS
1900	 70.99	+1	2179236..2180138	+	300	78062753	-	Bcep18194_B1903	-	family X DNA polymerase IV
1901	 66.41	0	2180140..2180928	-	262	78062754	-	Bcep18194_B1904	-	hypothetical protein
1902	 67.61	0	2181024..2181449	-	141	78062755	-	Bcep18194_B1905	-	MerR family transcriptional regulator
1903	 69.28	0	2181590..2182087	+	165	78062756	-	Bcep18194_B1906	-	hypothetical protein
1904	 65.53	0	2182337..2182777	-	146	78062757	-	Bcep18194_B1907	-	MarR family transcriptional regulator
1905	 67.12	0	2182912..2184441	+	509	78062758	-	Bcep18194_B1908	-	EmrB/QacA family drug resistance transporter
1906	 67.26	0	2184478..2185992	-	504	78062759	-	Bcep18194_B1909	-	Acetyl-CoA hydrolase
1907	 66.23	0	2186646..2187326	+	226	78062760	-	Bcep18194_B1910	-	CDP-alcohol phosphatidyltransferase
1908	 66.29	0	2187323..2188129	+	268	78062761	-	Bcep18194_B1911	-	2OG-Fe(II) oxygenase
1909	 72.36	+1	2188126..2189127	+	333	78062762	-	Bcep18194_B1912	-	hypothetical protein
1910	 66.41	0	2189164..2189931	+	255	78062763	-	Bcep18194_B1913	-	sugar nucleotidyltransferase-like
1911	 66.43	0	2189928..2191613	+	561	78062764	-	Bcep18194_B1914	-	2,3-dimethylmalate lyase
1912	 70.30	0	2191610..2192791	+	393	78062765	-	Bcep18194_B1915	-	thiamine pyrophosphate enzyme, putative 3-phosphonopyruvate decarboxylase
1913	 63.94	0	2192791..2193855	+	354	78062766	-	Bcep18194_B1916	-	aminotransferase, class V
1914	 57.36	-2	2194005..2195036	-	343	78062767	-	Bcep18194_B1917	-	AraC family transcriptional regulator
1915	 63.59	0	2195216..2196484	+	422	78062768	-	Bcep18194_B1918	-	3-oxoacyl-(acyl carrier protein) synthase II
1916	 63.15	-1	2196745..2197569	+	274	78062769	-	Bcep18194_B1919	-	hypothetical protein
1917	 65.28	0	2197598..2198749	-	383	78062770	-	Bcep18194_B1920	-	acyltransferase 3
1918	 63.75	0	2198981..2199220	-	79	78062771	-	Bcep18194_B1921	-	hypothetical protein
1919	 67.29	0	2199217..2199858	-	213	78062772	-	Bcep18194_B1922	-	hypothetical protein
1920	 71.36	+1	2199863..2200714	-	283	78062773	-	Bcep18194_B1923	-	hypothetical protein
1921	 65.60	0	2200776..2202083	-	435	78062774	-	Bcep18194_B1924	-	hypothetical protein
1922	 67.20	0	2202192..2202569	-	125	78062775	-	Bcep18194_B1925	-	hypothetical protein
1923	 55.13	-2	2202739..2202894	-	51	78062776	-	Bcep18194_B1926	-	LuxR family transcriptional regulator
1924	 50.60	-2	2203166..2203414	-	82	78062777	-	Bcep18194_B1928	-	hypothetical protein
1925	 67.63	0	2203427..2204359	+	310	78062778	-	Bcep18194_B1929	-	prolyl aminopeptidase
1926	 67.77	0	2204421..2204693	-	90	78062779	-	Bcep18194_B1930	-	hypothetical protein
1927	 70.05	0	2204880..2205914	-	344	78062780	-	Bcep18194_B1931	-	transglutaminase-like
1928	 71.42	+1	2205908..2208514	-	868	78062781	-	Bcep18194_B1932	-	hypothetical protein
1929	 68.50	0	2208730..2212158	-	1142	78062782	-	Bcep18194_B1933	-	transglutaminase-like
1930	 69.09	0	2212255..2213244	-	329	78062783	-	Bcep18194_B1934	-	transglutaminase-like enzyme putative cysteine protease-like
1931	 65.29	0	2213253..2214194	-	313	78062784	-	Bcep18194_B1935	-	hypothetical protein
1932	 65.97	0	2214259..2215689	-	476	78062785	-	Bcep18194_B1936	-	hypothetical protein
1933	 66.37	0	2216276..2217274	+	332	78062786	-	Bcep18194_B1937	-	LysR family transcriptional regulator
1934	 64.61	0	2217995..2218432	+	145	78062787	-	Bcep18194_B1938	-	hypothetical protein
1935	 69.32	0	2218496..2219323	+	275	78062788	-	Bcep18194_B1939	-	hypothetical protein
1936	 68.08	0	2219429..2222116	+	895	78062789	-	Bcep18194_B1940	-	hypothetical protein
1937	 64.57	0	2222132..2224225	+	697	78062790	-	Bcep18194_B1941	-	polysaccharide deacetylase
1938	 62.97	-1	2224222..2225493	+	423	78062791	-	Bcep18194_B1942	-	N-glycosyltransferase PgaC
1939	 67.69	0	2225471..2225959	+	162	78062792	-	Bcep18194_B1943	-	hypothetical protein
1940	 67.54	0	2226077..2227900	+	607	78062793	-	Bcep18194_B1944	-	glutamine--fructose-6-phosphate transaminase
1941	 69.11	0	2227897..2229165	+	422	78062794	-	Bcep18194_B1945	-	hypothetical protein
1942	 70.50	0	2229668..2230501	+	277	78062795	-	Bcep18194_B1946	-	cytochrome c, class I
1943	 68.96	0	2230536..2231015	+	159	78062796	-	Bcep18194_B1947	-	GCN5-related N-acetyltransferase
1944	 69.67	0	2231108..2232373	-	421	78062797	-	Bcep18194_B1948	-	allantoate amidohydrolase
1945	 68.38	0	2232366..2232890	-	174	78062798	-	Bcep18194_B1949	-	hypothetical protein
1946	 68.64	0	2232935..2234101	-	388	78062799	-	Bcep18194_B1950	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
1947	 68.56	0	2234279..2235175	+	298	78062800	-	Bcep18194_B1951	-	LysR family transcriptional regulator
1948	 62.57	-1	2235148..2235513	+	121	78062801	-	Bcep18194_B1952	-	helix-turn-helix protein, CopG
1949	 61.52	-1	2235801..2236364	+	187	78062802	-	Bcep18194_B1953	-	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1950	 65.92	0	2236490..2238088	+	532	78062803	-	Bcep18194_B1954	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1951	 70.64	+1	2238184..2238963	-	259	78062804	-	Bcep18194_B1955	-	hypothetical protein
1952	 67.93	0	2239124..2239678	-	184	78062805	-	Bcep18194_B1956	-	hypothetical protein
1953	 67.19	0	2239711..2241045	-	444	78062806	-	Bcep18194_B1957	-	hypothetical protein
1954	 70.57	+1	2241061..2242110	-	349	78062807	-	Bcep18194_B1958	-	peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase
1955	 63.65	0	2242131..2242859	-	242	78062808	glnQ	Bcep18194_B1959	-	glutamine ABC transporter ATP-binding protein
1956	 62.10	-1	2242856..2243512	-	218	78062809	glnP	Bcep18194_B1960	-	glutamine ABC transporter permease protein
1957	 63.88	0	2243579..2244331	-	250	78062810	glnH	Bcep18194_B1961	-	glutamine ABC transporter periplasmic protein
1958	 71.30	+1	2244946..2248551	-	1201	78062811	-	Bcep18194_B1962	-	ABC efflux pump, fused ATPase and inner membrane subunits
1959	 69.89	0	2248605..2249567	+	320	78062812	-	Bcep18194_B1963	-	LysR family transcriptional regulator
1960	 65.86	0	2249595..2249966	-	123	78062813	-	Bcep18194_B1964	-	membrane protein-like
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.