IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1805	 71.60	+1	2054089..2056539	+	816	78062658	-	Bcep18194_B1808	-	Beta-mannosidase
1806	 66.31	0	2056586..2057977	-	463	78062659	-	Bcep18194_B1809	-	sigma-54 dependent trancsriptional regulator
1807	 66.59	0	2058670..2059920	-	416	78062660	-	Bcep18194_B1810	-	glycosyl transferase, group 1
1808	 65.16	0	2060098..2060760	+	220	78062661	-	Bcep18194_B1811	-	acyltransferase-like
1809	 67.17	0	2060757..2062337	+	526	78062662	-	Bcep18194_B1812	-	mannose-1-phosphate guanylyltransferase (GDP)
1810	 68.99	0	2062374..2063663	-	429	78062663	-	Bcep18194_B1813	-	hypothetical protein
1811	 67.23	0	2063660..2064718	-	352	78062664	-	Bcep18194_B1814	-	acyltransferase 3
1812	 63.71	0	2064827..2066179	-	450	78062665	-	Bcep18194_B1815	-	hypothetical protein
1813	 69.18	0	2066241..2068508	-	755	78062666	-	Bcep18194_B1816	-	protein-tyrosine kinase
1814	 69.48	0	2068564..2069736	-	390	78062667	-	Bcep18194_B1817	-	polysaccharide export protein
1815	 73.47	+1	2069900..2070325	+	141	78062668	-	Bcep18194_B1818	-	hypothetical protein
1816	 69.84	0	2070489..2072345	-	618	78062669	-	Bcep18194_B1819	-	hypothetical protein
1817	 65.39	0	2072838..2074094	+	418	78062670	-	Bcep18194_B1820	-	polysaccharide biosynthesis protein
1818	 68.91	0	2074170..2075237	+	355	78062671	-	Bcep18194_B1821	-	glycosyl transferase family protein
1819	 67.48	0	2075693..2077894	+	733	78062672	-	Bcep18194_B1822	-	Beta-glucosidase
1820	 60.87	-1	2078291..2082289	-	1332	78062673	-	Bcep18194_B1823	-	hypothetical protein
1821	 59.65	-2	2082318..2083244	-	308	78062674	-	Bcep18194_B1824	-	hypothetical protein
1822	 49.21	-2	2085402..2085974	-	190	78062675	-	Bcep18194_B1825	-	Rhs family protein
1823	 62.98	-1	2086776..2091065	-	1429	78062676	-	Bcep18194_B1826	-	Rhs family protein
1824	 62.85	-1	2091062..2092684	-	540	78062677	-	Bcep18194_B1827	-	Rhs element Vgr protein
1825	 59.53	-2	2092755..2094674	-	639	78062678	-	Bcep18194_B1828	-	hypothetical protein
1826	 67.70	0	2095146..2095724	-	192	78062679	-	Bcep18194_B1829	-	hypothetical protein
1827	 71.10	+1	2095852..2096709	+	285	78062680	-	Bcep18194_B1830	-	LysR family transcriptional regulator
1828	 60.98	-1	2096740..2097390	+	216	78062681	-	Bcep18194_B1831	-	hypothetical protein
1829	 65.99	0	2097573..2098160	+	195	78062682	-	Bcep18194_B1832	-	hypothetical protein
1830	 66.32	0	2098423..2098713	+	96	78062683	-	Bcep18194_B1833	-	histone-like nucleoid-structuring protein H-NS
1831	 64.46	0	2098769..2099719	-	316	78062684	-	Bcep18194_B1834	-	hypothetical protein
1832	 69.47	0	2099809..2101200	-	463	78062685	-	Bcep18194_B1835	-	OmpW family protein
1833	 66.28	0	2101205..2102500	-	431	78062686	-	Bcep18194_B1836	-	multidrug resistance efflux pump-like
1834	 68.26	0	2102513..2103514	-	333	78062687	-	Bcep18194_B1837	-	hypothetical protein
1835	 65.35	0	2103514..2105634	-	706	78062688	-	Bcep18194_B1838	-	antibiotic ABC transporter permease
1836	 62.90	-1	2105780..2105965	-	61	78062689	-	Bcep18194_B1839	-	hypothetical protein
1837	 60.92	-1	2106191..2106364	-	57	78062690	-	Bcep18194_B1840	-	hypothetical protein
1838	 64.34	0	2106646..2108061	+	471	78062691	-	Bcep18194_B1841	-	outer membrane efflux protein
1839	 65.03	0	2108550..2109587	+	345	78062692	amiE	Bcep18194_B1842	-	acylamide amidohydrolase
1840	 66.67	0	2109656..2110138	+	160	78062693	-	Bcep18194_B1843	-	AmiS/UreI transporter
1841	 70.95	+1	2110138..2110977	+	279	78062694	-	Bcep18194_B1844	-	ATPase AAA_5
1842	 71.60	+1	2110974..2112533	+	519	78062695	-	Bcep18194_B1845	-	nitric oxide reductase activation protein-like
1843	 66.05	0	2112566..2113708	+	380	78062696	-	Bcep18194_B1846	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
1844	 67.65	0	2113715..2114326	+	203	78062697	-	Bcep18194_B1847	-	response regulator receiver/ANTAR domain-containing protein
1845	 66.44	0	2114366..2114815	-	149	78062698	-	Bcep18194_B1848	-	putative transcriptional regulator
1846	 66.23	0	2115169..2116092	+	307	78062699	-	Bcep18194_B1849	-	Alpha/beta hydrolase
1847	 64.40	0	2116179..2117900	-	573	78062700	-	Bcep18194_B1850	-	gamma-glutamyltransferase 1
1848	 69.52	0	2118295..2118819	+	174	78062701	-	Bcep18194_B1851	-	hypothetical protein
1849	 70.38	0	2119021..2123568	+	1515	78062702	-	Bcep18194_B1852	-	DEAD/DEAH box helicase
1850	 72.55	+1	2123704..2124978	+	424	78062703	-	Bcep18194_B1853	-	putative amino acid transporter
1851	 64.65	0	2125141..2125437	-	98	78062704	-	Bcep18194_B1854	-	hypothetical protein
1852	 65.56	0	2125510..2125869	-	119	78062705	-	Bcep18194_B1855	-	hypothetical protein
1853	 71.23	+1	2126000..2126986	-	328	78062706	-	Bcep18194_B1856	-	LysR family transcriptional regulator
1854	 65.99	0	2127064..2127801	-	245	78062707	-	Bcep18194_B1857	-	XRE family transcriptional regulator
1855	 68.58	0	2127922..2128497	+	191	78062708	-	Bcep18194_B1858	-	hypothetical protein
1856	 66.95	0	2128771..2129478	+	235	78062709	-	Bcep18194_B1859	-	intradiol ring-cleavage dioxygenase
1857	 68.52	0	2129482..2130075	+	197	78062710	-	Bcep18194_B1860	-	protocatechuate 3,4-dioxygenase
1858	 68.08	0	2130535..2131386	-	283	78062711	-	Bcep18194_B1861	-	AraC family transcriptional regulator
1859	 67.18	0	2131457..2132236	+	259	78062712	-	Bcep18194_B1862	-	Alpha/beta hydrolase
1860	 67.75	0	2132275..2133102	-	275	78062713	-	Bcep18194_B1863	-	D-aminopeptidase DppA
1861	 70.45	0	2133099..2134181	-	360	78062714	-	Bcep18194_B1864	-	aminopeptidase DmpA
1862	 68.34	0	2134181..2135074	-	297	78062715	-	Bcep18194_B1865	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1863	 66.23	0	2135082..2136002	-	306	78062716	-	Bcep18194_B1866	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1864	 64.75	0	2136082..2137644	-	520	78062717	-	Bcep18194_B1867	-	dipeptide/oligopeptide/nickel ABC periplasmic ligand-binding protein
1865	 68.98	0	2137740..2139641	-	633	78062718	-	Bcep18194_B1868	-	dipeptide/oligopeptide/nickel ABC transporter ATPase
1866	 69.44	0	2139671..2140678	-	335	78062719	-	Bcep18194_B1869	-	peptidase T2, asparaginase 2
1867	 66.08	0	2140675..2141691	-	338	78062720	-	Bcep18194_B1870	-	RpiR family transcriptional regulator
1868	 68.00	0	2142092..2143363	+	423	78062721	-	Bcep18194_B1871	-	major facilitator transporter
1869	 68.11	0	2143391..2145811	+	806	78062722	-	Bcep18194_B1872	-	Alpha-glucosidase
1870	 66.58	0	2145915..2147102	+	395	78062723	-	Bcep18194_B1873	-	outer membrane protein (porin)
1871	 67.80	0	2147412..2149442	+	676	78062724	-	Bcep18194_B1874	-	BCCT transporter
1872	 73.08	+1	2149495..2149806	+	103	78062725	-	Bcep18194_B1875	-	hypothetical protein
1873	 69.96	0	2149906..2150754	-	282	78062726	-	Bcep18194_B1876	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
1874	 69.40	0	2150956..2152419	+	487	78062727	-	Bcep18194_B1877	-	metallophosphoesterase
1875	 71.39	+1	2152416..2153813	+	465	78062728	-	Bcep18194_B1878	-	di-haem cytochrome c peroxidase
1876	 69.20	0	2153911..2154186	+	91	78062729	-	Bcep18194_B1879	-	hypothetical protein
1877	 69.43	0	2154268..2155752	-	494	78062730	-	Bcep18194_B1880	-	GntR family transcriptional regulator
1878	 68.38	0	2155956..2156306	+	116	78062731	-	Bcep18194_B1881	-	hypothetical protein
1879	 68.09	0	2156460..2156882	-	140	78062732	-	Bcep18194_B1882	-	YeeE/YedE family membrane protein
1880	 71.49	+1	2156884..2157318	-	144	78062733	-	Bcep18194_B1883	-	YeeE/YedE family membrane protein
1881	 66.38	0	2157308..2157658	-	116	78062734	-	Bcep18194_B1884	-	ArsR family transcriptional regulator
1882	 71.00	+1	2157755..2159116	-	453	78062735	-	Bcep18194_B1885	-	major facilitator transporter
1883	 67.66	0	2159197..2160405	-	402	78062736	-	Bcep18194_B1886	-	salicylate hydroxylase
1884	 66.51	0	2160425..2161066	-	213	78062737	-	Bcep18194_B1887	-	maleylacetoacetate isomerase
1885	 64.95	0	2161092..2161790	-	232	78062738	-	Bcep18194_B1888	-	fumarylacetoacetate (FAA) hydrolase
1886	 68.77	0	2161881..2162924	-	347	78062739	-	Bcep18194_B1889	-	gentisate 1,2-dioxygenase
1887	 68.25	0	2163089..2164033	+	314	78062740	-	Bcep18194_B1890	-	LysR family transcriptional regulator
1888	 71.16	+1	2164245..2165513	-	422	78062741	-	Bcep18194_B1891	-	pyridine nucleotide-disulphide oxidoreductase
1889	 71.37	+1	2165510..2165743	-	77	78062742	-	Bcep18194_B1892	-	ferredoxin
1890	 71.28	+1	2165871..2166998	-	375	78062743	-	Bcep18194_B1893	-	FAD dependent oxidoreductase
1891	 68.98	0	2166995..2168074	-	359	78062744	-	Bcep18194_B1894	-	proline racemase
1892	 65.69	0	2168179..2169099	+	306	78062745	-	Bcep18194_B1895	-	dihydrodipicolinate synthetase
1893	 66.11	0	2169329..2170954	+	541	78062746	-	Bcep18194_B1896	-	amino acid transporter
1894	 71.15	+1	2171030..2172613	+	527	78062747	-	Bcep18194_B1897	-	2,5-dioxopentanoate dehydrogenase
1895	 68.62	0	2172615..2173637	+	340	78062748	-	Bcep18194_B1898	-	malate/L-lactate dehydrogenase
1896	 66.18	0	2173922..2175781	+	619	78062749	-	Bcep18194_B1899	-	dihydroxy-acid dehydratase
1897	 74.40	+2	2175919..2176746	-	275	78062750	-	Bcep18194_B1900	-	SH3 domain-containing protein
1898	 72.34	+1	2176780..2177220	-	146	78062751	-	Bcep18194_B1901	-	hypothetical protein
1899	 71.81	+1	2177519..2179054	+	511	78062752	-	Bcep18194_B1902	-	RNA polymerase, sigma 38 subunit, RpoS
1900	 70.99	+1	2179236..2180138	+	300	78062753	-	Bcep18194_B1903	-	family X DNA polymerase IV
1901	 66.41	0	2180140..2180928	-	262	78062754	-	Bcep18194_B1904	-	hypothetical protein
1902	 67.61	0	2181024..2181449	-	141	78062755	-	Bcep18194_B1905	-	MerR family transcriptional regulator
1903	 69.28	0	2181590..2182087	+	165	78062756	-	Bcep18194_B1906	-	hypothetical protein
1904	 65.53	0	2182337..2182777	-	146	78062757	-	Bcep18194_B1907	-	MarR family transcriptional regulator
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.